(Linear) MAP of: ./Fgr_contig0025.seq check: 1891 from: 1 to: 1382 Fgr_contig0025 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. DraI | GGCCCCCCCCTCGCAGTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAGAGTCGATGAATTGAGCTTCTAACAATCTATGCTTCACCTCACTTGTTAAAAAG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCGGGGGGGGAGCGTCAAAAAAAAAAAAAAAAAAAAAAAAATTTCTCTCAGCTACTTAACTCGAAGATTGTTAGATACGAAGTGGAGTGAACAATTTTTC a G P P L A V F F F F F F F L K R V D E L S F * Q S M L H L T C * K E - b A P P S Q F F F F F F F F * R E S M N * A S N N L C F T S L V K K - c P P P R S F F F F F F F F K E S R * I E L L T I Y A S P H L L K R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d G G R A T K K K K K K K K F L T S S N L K * C D I S * R V Q * F - e G G G R L K K K K K K K K L S L R H I S S R V I * A E G * K N F L - f A G G E C N K K K K K K K * L S D I F Q A E L L R H K V E S T L F - BsrBI | AAAAAAAGGAAAAAAAAGCTGGATAACCGAGCGGGATGTGTGTATCAAATCCTTGACAGTTTGTTCTAGTGATGTACTTTGACTAACGAACTATTGTGAA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TTTTTTTCCTTTTTTTTCGACCTATTGGCTCGCCCTACACACATAGTTTAGGAACTGTCAAACAAGATCACTACATGAAACTGATTGCTTGATAACACTT a K K E K K A G * P S G M C V S N P * Q F V L V M Y F D * R T I V N - b K K R K K K L D N R A G C V Y Q I L D S L F * * C T L T N E L L * I - c K K G K K S W I T E R D V C I K S L T V C S S D V L * L T N Y C E - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S F F S F F A P Y G L P I H T D F G Q C N T R T I Y K S * R V I T F - e F F P F F L Q I V S R S T H I L D K V T Q E L S T S Q S V F * Q S - f F F L F F F S S L R A P H T Y * I R S L K N * H H V K V L S S N H - ScaI AlwNI BpmI | | | TATCCAAGATAGTACTTCCGTTTGGAAGTTCGTGGCAGTTGCTGTTGGTTTACATCCCCATGTCCCCGTTGCCAGGGTTGTCTCCAGTTGAGGCACTCAG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 ATAGGTTCTATCATGAAGGCAAACCTTCAAGCACCGTCAACGACAACCAAATGTAGGGGTACAGGGGCAACGGTCCCAACAGAGGTCAACTCCGTGAGTC a I Q D S T S V W K F V A V A V G L H P H V P V A R V V S S * G T Q - b S K I V L P F G S S W Q L L L V Y I P M S P L P G L S P V E A L R - c Y P R * Y F R L E V R G S C C W F T S P C P R C Q G C L Q L R H S G - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d I W S L V E T Q F N T A T A T P K C G W T G T A L T T E L Q P V * - e Y G L Y Y K R K S T R P L Q Q Q N V D G H G R Q W P Q R W N L C E - f I D L I T S G N P L E H C N S N T * M G M D G N G P N D G T S A S L - MscI | GGTGGCCAGGAGGATGATTTGGGGAATTACAACAACCATTAGGGCAAAGAAGGACGCAACAGTGACAGCGATGATCTTGATTTCGAGCATAACAATACGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CCACCGGTCCTCCTACTAAACCCCTTAATGTTGTTGGTAATCCCGTTTCTTCCTGCGTTGTCACTGTCGCTACTAGAACTAAAGCTCGTATTGTTATGCG a G G Q E D D L G N Y N N H * G K E G R N S D S D D L D F E H N N T L - b V A R R M I W G I T T T I R A K K D A T V T A M I L I S S I T I R - c W P G G * F G E L Q Q P L G Q R R T Q Q * Q R * S * F R A * Q Y A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d P P W S S S K P F * L L W * P L S P R L L S L S S R S K S C L L V - e P H G P P H N P S N C C G N P C L L V C C H C R H D Q N R A Y C Y A - f T A L L I I Q P I V V V M L A F F S A V T V A I I K I E L M V I R - BspGI AhdI | | TTCCAGGCAGACTTGGAGAAGCTGGACCAAGCGTCACGAACGGTAGCGTAGCCCCGACCGCCGACAACGACGGGCTCGATGCGGCCATTGAATGAACGGT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AAGGTCCGTCTGAACCTCTTCGACCTGGTTCGCAGTGCTTGCCATCGCATCGGGGCTGGCGGCTGTTGCTGCCCGAGCTACGCCGGTAACTTACTTGCCA a P G R L G E A G P S V T N G S V A P T A D N D G L D A A I E * T V - b F Q A D L E K L D Q A S R T V A * P R P P T T T G S M R P L N E R S - c S R Q T W R S W T K R H E R * R S P D R R Q R R A R C G H * M N G - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d S G P L S P S A P G L T V F P L T A G V A S L S P S S A A M S H V T - e E L C V Q L L Q V L R * S R Y R L G S R R C R R A R H P W Q I F P - f K W A S K S F S S W A D R V T A Y G R G G V V V P E I R G N F S R - StuI | CGAAGGGAATGATGGTGTCGGCCTCGGCGGGAAGGAGAGAGGCCTGAACGCGAACGAGAACAACATAGGCAGGAATCTGGATGGCGACCTGGAGGAACAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCTTCCCTTACTACCACAGCCGGAGCCGCCCTTCCTCTCTCCGGACTTGCGCTTGCTCTTGTTGTATCCGTCCTTAGACCTACCGCTGGACCTCCTTGTC a E G N D G V G L G G K E R G L N A N E N N I G R N L D G D L E E Q - b K G M M V S A S A G R R E A * T R T R T T * A G I W M A T W R N R - c R R E * W C R P R R E G E R P E R E R E Q H R Q E S G W R P G G T E - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S P F S P T P R P P F S L P R F A F S F L M P L F R S P S R S S C - e R L S H H H R G R R S P S L G S R S R S C C L C S D P H R G P P V - f D F P I I T D A E A P L L S A Q V R V L V V Y A P I Q I A V Q L F L - BpmI RcaI| BsmI NcoI EciI || | | | AGCCAGGATCATGATGCCCCAAACCGCCGCTTTCGCTACCATCAAACTCAGGCATTCTTTGGCTGTCGGTGCCCATGGCGTAAACTGTGGTGATTCCGCC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TCGGTCCTAGTACTACGGGGTTTGGCGGCGAAAGCGATGGTAGTTTGAGTCCGTAAGAAACCGACAGCCACGGGTACCGCATTTGACACCACTAAGGCGG a S Q D H D A P N R R F R Y H Q T Q A F F G C R C P W R K L W * F R R - b A R I M M P Q T A A F A T I K L R H S L A V G A H G V N C G D S A - c P G S * C P K P P L S L P S N S G I L W L S V P M A * T V V I P P - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d L W S * S A G F R R K R * W * V * A N K P Q R H G H R L S H H N R - e S G P D H H G L G G S E S G D F E P M R Q S D T G M A Y V T T I G G - f A L I M I G W V A A K A V M L S L C E K A T P A W P T F Q P S E A - BamHI Bce83I KpnI | BpmI | StuI EcoRI NcoI | | | | | | | GAGGGTGACGACTTGAGAAGCAGCCCACCAGATGACGATAGGCCTCCAGGTGGCGAGGAAAGGTGGTCTTGAACGCAGGAATTCGGCGGTACCATGGATC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CTCCCACTGCTGAACTCTTCGTCGGGTGGTCTACTGCTATCCGGAGGTCCACCGCTCCTTTCCACCAGAACTTGCGTCCTTAAGCCGCCATGGTACCTAG a G * R L E K Q P T R * R * A S R W R G K V V L N A G I R R Y H G S - b E G D D L R S S P P D D D R P P G G E E R W S * T Q E F G G T M D P - c R V T T * E A A H Q M T I G L Q V A R K G G L E R R N S A V P W I - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d R P H R S S F C G V L H R Y A E L H R P F T T K F A P I R R Y W P D - e L T V V Q S A A W W I V I P R W T A L F P P R S R L F E A T G H I - f S P S S K L L L G G S S S L G G P P S S L H D Q V C S N P P V M S - AceIII Bpu1102I BspGI | BclI | | | | CTGGGACTCGGGTGTAATGACGATGTGGACCCAGGCGGTGCTAAGCTGGACGCAGATGAGAGAGCTGATCAGGTGGGCGACAGCGAAGGAGTAAGGAGTG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GACCCTGAGCCCACATTACTGCTACACCTGGGTCCGCCACGATTCGACCTGCGTCTACTCTCTCGACTAGTCCACCCGCTGTCGCTTCCTCATTCCTCAC a W D S G V M T M W T Q A V L S W T Q M R E L I R W A T A K E * G V - b G T R V * * R C G P R R C * A G R R * E S * S G G R Q R R S K E * - c L G L G C N D D V D P G G A K L D A D E R A D Q V G D S E G V R S D - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d Q S E P T I V I H V W A T S L Q V C I L S S I L H A V A F S Y P T - e R P S P H L S S T S G P P A L S S A S S L A S * T P S L S P T L L - f G P V R T Y H R H P G L R H * A P R L H S L Q D P P R C R L L L S H - NsiI SphI | BpmI | | | ACGTGAGAAAGCGCCGACATGATGAGTCCGAGAGCGAGGGCCTGGAGAGCATGCATCAAGTAGCCGCGATACATGGCACGGAAGCCACCAGTAGATCGAA 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 TGCACTCTTTCGCGGCTGTACTACTCAGGCTCTCGCTCCCGGACCTCTCGTACGTAGTTCATCGGCGCTATGTACCGTGCCTTCGGTGGTCATCTAGCTT a T * E S A D M M S P R A R A W R A C I K * P R Y M A R K P P V D R R - b R E K A P T * * V R E R G P G E H A S S S R D T W H G S H Q * I E - c V R K R R H D E S E S E G L E S M H Q V A A I H G T E A T S R S K - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d V H S L A S M I L G L A L A Q L A H M L Y G R Y M A R F G G T S R - e S T L F R R C S S D S L S P R S L M C * T A A I C P V S A V L L D F - f R S F A G V H H T R S R P G P S C A D L L R S V H C P L W W Y I S - NgoAIV NcoI | | | GGAGGCTGAATGTAGCGCGGAAAGACGAGGTAATAGGCTTGCCATGGCCGGCGGCAGCAGGAGCAGAGGGAACACCAGAAGGCTTGGTGATGTCGTCGTT 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CCTCCGACTTACATCGCGCCTTTCTGCTCCATTATCCGAACGGTACCGGCCGCCGTCGTCCTCGTCTCCCTTGTGGTCTTCCGAACCACTACAGCAGCAA a R L N V A R K D E V I G L P W P A A A G A E G T P E G L V M S S L - b G G * M * R G K T R * * A C H G R R Q Q E Q R E H Q K A W * C R R W - c E A E C S A E R R G N R L A M A G G S R S R G N T R R L G D V V V - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d L L S F T A R F S S T I P K G H G A A A P A S P V G S P K T I D D N - e S A S H L A S L R P L L S A M A P P L L L L P F V L L S P S T T T - f P P Q I Y R P F V L Y Y A Q W P R R C C S C L S C W F A Q H H R R - BbsI | GGCGATAGACTCGACGGCGAGAGGTGCGTAAGCGGGAGGCTTCTCATCTTCGACGATGGCGAGGACGGGGAAGACCTTTTCAAAGGTGTACGAGCAAAGG 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 CCGCTATCTGAGCTGCCGCTCTCCACGCATTCGCCCTCCGAAGAGTAGAAGCTGCTACCGCTCCTGCCCCTTCTGGAAAAGTTTCCACATGCTCGTTTCC a A I D S T A R G A * A G G F S S S T M A R T G K T F S K V Y E Q R - b R * T R R R E V R K R E A S H L R R W R G R G R P F Q R C T S K G - c G D R L D G E R C V S G R L L I F D D G E D G E D L F K G V R A K E - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d A I S E V A L P A Y A P P K E D E V I A L V P F V K E F T Y S C L - e P S L S S P S L H T L P L S R M K S S P S S P S S R K L P T R A F - f Q R Y V R R R S T R L R S A E * R R R H R P R P L G K * L H V L L P - BfiI MscI MscI PflMI | | | | AGAAGGACTGGGAAAAAGAGAATGAAGTTGGCCAAAAAGACGTAGAAAGACCAGTCGGGAAGCTGGTTAATCTCATGGCCAAGATTTGGCTTGGGCATGT 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 TCTTCCTGACCCTTTTTCTCTTACTTCAACCGGTTTTTCTGCATCTTTCTGGTCAGCCCTTCGACCAATTAGAGTACCGGTTCTAAACCGAACCCGTACA a R R T G K K R M K L A K K T * K D Q S G S W L I S W P R F G L G M L - b E G L G K R E * S W P K R R R K T S R E A G * S H G Q D L A W A C - c K D W E K E N E V G Q K D V E R P V G K L V N L M A K I W L G H V - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d L L V P F F L I F N A L F V Y F S W D P L Q N I E H G L N P K P M - e S F S Q S F S F S T P W F S T S L G T P F S T L R M A L I Q S P C T - f S P S P F L S H L Q G F L R L F V L R S A P * D * P W S K A Q A H - RcaI BssSI | | TATCGCGCCGCATGAGCGACATGGCCGTTTCAGAAATCATGATGGATGATTACAAAAAGGTGATTTAATATGAGCCTCGTGC 1301 ---------+---------+---------+---------+---------+---------+---------+---------+-- 1382 ATAGCGCGGCGTACTCGCTGTACCGGCAAAGTCTTTAGTACTACCTACTAATGTTTTTCCACTAAATTATACTCGGAGCACG a S R R M S D M A V S E I M M D D Y K K V I * Y E P R - b Y R A A * A T W P F Q K S * W M I T K R * F N M S L V - c I A P H E R H G R F R N H D G * L Q K G D L I * A S C - 1301 ---------+---------+---------+---------+---------+---------+---------+---------+-- 1382 d N D R R M L S M A T E S I M I S S * L F T I * Y S G R A - e I A G C S R C P R K L F * S P H N C F P S K I H A E H - f * R A A H A V H G N * F D H H I I V F L H N L I L R T - Enzymes that do cut: AceIII AhdI AlwNI BamHI BbsI Bce83I BclI BfiI BpmI Bpu1102I BsmI BspGI BsrBI BssSI DraI EciI EcoRI KpnI MscI NcoI NgoAIV NsiI PflMI RcaI ScaI SphI StuI Enzymes that do not cut: AatII AflII ApaI ApaBI ApaLI AscI AvrII BcgI BglI BglII BplI Bpu10I BsaI BsaBI BsaXI BsbI BseRI BsgI BsiWI BsmBI BspEI BspLU11I BspMI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraIII DrdI DrdII EagI EarI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI MfeI MluI NarI NdeI NheI NotI NruI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I Sse8647I SspI SwaI Tth111I VspI XbaI XcmI XhoI XmnI