(Linear) MAP of: ./Fgr_contig0002.seq check: 7937 from: 1 to: 1688 Fgr_contig0002 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. BseRI EcoRI | BseRI BssSI BssSI | | MfeI AatII | | | | | | | | GCACGAGGAGCACGAGAATTCAATAAACGGTCAACATTCTCCCTTTACTTGAACAATTGCTTGAATCATAACAACAACTACCCCCTGACGTCACATCATG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCTCGTGCTCTTAAGTTATTTGCCAGTTGTAAGAGGGAAATGAACTTGTTAACGAACTTAGTATTGTTGTTGATGGGGGACTGCAGTGTAGTAC a A R G A R E F N K R S T F S L Y L N N C L N H N N N Y P L T S H H V - b H E E H E N S I N G Q H S P F T * T I A * I I T T T T P * R H I M - c T R S T R I Q * T V N I L P L L E Q L L E S * Q Q L P P D V T S C - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P A R S N L L R D V N E R * K F L Q K F * L L L * G R V D C * - e V L L V L I * Y V T L M R G K S S C N S S D Y C C S G G S T V D H - f C S S C S F E I F P * C E G K V Q V I A Q I M V V V V G Q R * M M - BsmBI BseRI BbsI | BseRI | | | | | TCTCCTCACGCCGAGAAGACCGTCTCTCGGTTCCATGCCACCTCCACCGACAAGGCCATCGCCATTGAGGAGGAGTACGCTGCTCACAACTATCACCCCC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AGAGGAGTGCGGCTCTTCTGGCAGAGAGCCAAGGTACGGTGGAGGTGGCTGTTCCGGTAGCGGTAACTCCTCCTCATGCGACGAGTGTTGATAGTGGGGG a S S R R E D R L S V P C H L H R Q G H R H * G G V R C S Q L S P P - b S P H A E K T V S R F H A T S T D K A I A I E E E Y A A H N Y H P L - c L L T P R R P S L G S M P P P P T R P S P L R R S T L L T T I T P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d T E E R R S S R R E T G H W R W R C P W R W Q P P T R Q E C S D G G - e R R V G L L G D R P E M G G G G V L G D G N L L L V S S V V I V G - f D G * A S F V T E R N W A V E V S L A M A M S S S Y A A * L * * G - Bsu36I SanDI | Pfl1108I EciI Eco47III | | | | | TCCCCGTGGTCTTTTCCCGCGCCGAAGGCGTCAACGTCTGGGACCCTGAGGGCAACCACTACTACGATTTCCTCTCCGCCTACAGCGCTGTCAACCAAGG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGGGGCACCAGAAAAGGGCGCGGCTTCCGCAGTTGCAGACCCTGGGACTCCCGTTGGTGATGATGCTAAAGGAGAGGCGGATGTCGCGACAGTTGGTTCC a P R G L F P R R R R Q R L G P * G Q P L L R F P L R L Q R C Q P R - b P V V F S R A E G V N V W D P E G N H Y Y D F L S A Y S A V N Q G - c S P W S F P A P K A S T S G T L R A T T T T I S S P P T A L S T K A - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G R P R K G R R L R * R R P G Q P C G S S R N G R R R C R Q * G L - e E G H D K G A G F A D V D P V R L A V V V V I E E G G V A S D V L - f R G T T K E R A S P T L T Q S G S P L W * * S K R E A * L A T L W P - AceIII SacI Bpu1102I XhoI BsmI | BbsI | | | | | | CCACTGTCACCCCGAGCTCATCAAGACTCTCACTGAACAGGCTGGTCGATTGACGCTCAGCTCTCGAGCATTCTACAACGATGTCTTCCCCAAGTGGGCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GGTGACAGTGGGGCTCGAGTAGTTCTGAGAGTGACTTGTCCGACCAGCTAACTGCGAGTCGAGAGCTCGTAAGATGTTGCTACAGAAGGGGTTCACCCGA a P L S P R A H Q D S H * T G W S I D A Q L S S I L Q R C L P Q V G * - b H C H P E L I K T L T E Q A G R L T L S S R A F Y N D V F P K W A - c T V T P S S S R L S L N R L V D * R S A L E H S T T M S S P S G L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G S D G R A * * S E * Q V P Q D I S A * S E L M R C R H R G W T P - e A V T V G L E D L S E S F L S T S Q R E A R S C E V V I D E G L P S - f W Q * G S S M L V R V S C A P R N V S L E R A N * L S T K G L H A - DrdII ApaLI Bpu10I | | | GAAAAGGTCCGAAGCGTCTTTGGTTACGACATGGTTCTGCCCATGTGCACTGGCGCTGAGGCTGTCGAGACTGCTATTAAGATTGCCCGCAAGTGGGCGT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CTTTTCCAGGCTTCGCAGAAACCAATGCTGTACCAAGACGGGTACACGTGACCGCGACTCCGACAGCTCTGACGATAATTCTAACGGGCGTTCACCCGCA a K G P K R L W L R H G S A H V H W R * G C R D C Y * D C P Q V G V - b E K V R S V F G Y D M V L P M C T G A E A V E T A I K I A R K W A Y - c K R S E A S L V T T W F C P C A L A L R L S R L L L R L P A S G R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d Q F P G F R R Q N R C P E A W T C Q R Q P Q R S Q * * S Q G C T P T - e F L D S A D K T V V H N Q G H A S A S L S D L S S N L N G A L P R - f S F T R L T K P * S M T R G M H V P A S A T S V A I L I A R L H A - Bsu36I StuI | | ACAAGGTCAAGGGTGTTCCTCAGGAGAAGGCCTGGATCTTTGGTGTTTCGGAGAACTTCCACGGTCGAACTATGACCGCCATCACCTTGTCAGTAGACCC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TGTTCCAGTTCCCACAAGGAGTCCTCTTCCGGACCTAGAAACCACAAAGCCTCTTGAAGGTGCCAGCTTGATACTGGCGGTAGTGGAACAGTCATCTGGG a Q G Q G C S S G E G L D L W C F G E L P R S N Y D R H H L V S R P - b K V K G V P Q E K A W I F G V S E N F H G R T M T A I T L S V D P - c T R S R V F L R R R P G S L V F R R T S T V E L * P P S P C Q * T P - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d C P * P H E E P S P R S R Q H K P S S G R D F * S R W * R T L L G - e V L D L T N R L L L G P D K T N R L V E V T S S H G G D G Q * Y V - f Y L T L P T G * S F A Q I K P T E S F K W P R V I V A M V K D T S G - AhdI BsrDI EarI | | | CGAGTCAAGAGAGAACTACGGCCCTTATGTTCCCAACGTCGGTGCCATCAACCCCACCACCGGAAAGGCCATCCGATACAACAACATTGCCGATCTCGAA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCTCAGTTCTCTCTTGATGCCGGGAATACAAGGGTTGCAGCCACGGTAGTTGGGGTGGTGGCCTTTCCGGTAGGCTATGTTGTTGTAACGGCTAGAGCTT a R V K R E L R P L C S Q R R C H Q P H H R K G H P I Q Q H C R S R R - b E S R E N Y G P Y V P N V G A I N P T T G K A I R Y N N I A D L E - c S Q E R T T A L M F P T S V P S T P P P E R P S D T T T L P I S K - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R T L L S S R G K H E W R R H W * G W W R F P W G I C C C Q R D R - e G L * S L V V A R I N G V D T G D V G G G S L G D S V V V N G I E F - f S D L S F * P G * T G L T P A M L G V V P F A M R Y L L M A S R S - BsgI XmnI XhoI BsaI BsbI EcoNI | | | | | | | GAGGTTCTCGAGGCCCACGGCAAGGAGACCGCTGCTTTCATCTGCGAGCCTATTCAGGGTGAGGCTGGTGTTGTTGTCCCCGACGATGATTACCTCGCCA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CTCCAAGAGCTCCGGGTGCCGTTCCTCTGGCGACGAAAGTAGACGCTCGGATAAGTCCCACTCCGACCACAACAACAGGGGCTGCTACTAATGGAGCGGT a G S R G P R Q G D R C F H L R A Y S G * G W C C C P R R * L P R Q - b E V L E A H G K E T A A F I C E P I Q G E A G V V V P D D D Y L A K - c R F S R P T A R R P L L S S A S L F R V R L V L L S P T M I T S P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d L P E R P G R C P S R Q K * R R A * E P H P Q H Q Q G R R H N G R W - e L N E L G V A L L G S S E D A L R N L T L S T N N D G V I I V E G - f S T R S A W P L S V A A K M Q S G I * P S A P T T T G S S S * R A - ApaBI BspGI BspGI SphI | | | | | AGGTCCAGGCTCTCTGCACCAAGCACAATGTTTTGTTCATTTGCGACGAGATTCAAACTGGTATTGGACGAACTGGACGCATGCTTTGCTCTGAATGGGC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TCCAGGTCCGAGAGACGTGGTTCGTGTTACAAAACAAGTAAACGCTGCTCTAAGTTTGACCATAACCTGCTTGACCTGCGTACGAAACGAGACTTACCCG a G P G S L H Q A Q C F V H L R R D S N W Y W T N W T H A L L * M G - b V Q A L C T K H N V L F I C D E I Q T G I G R T G R M L C S E W A - c R S R L S A P S T M F C S F A T R F K L V L D E L D A C F A L N G P - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d P G P E R C W A C H K T * K R R S E F Q Y Q V F Q V C A K S Q I P - e L D L S E A G L V I N Q E N A V L N L S T N S S S S A H K A R F P - f L T W A R Q V L C L T K N M Q S S I * V P I P R V P R M S Q E S H A - Tth111I AceIII | | CAACATCAAGCCCGACCTTGTCACTCTTGGAAAGGCCATCTCTGGTGGCATGTACCCTGTGAGCTGCGTTCTCAGCAGCAAGGAGGTCATGCTGGTTGTT 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 GTTGTAGTTCGGGCTGGAACAGTGAGAACCTTTCCGGTAGAGACCACCGTACATGGGACACTCGACGCAAGAGTCGTCGTTCCTCCAGTACGACCAACAA a Q H Q A R P C H S W K G H L W W H V P C E L R S Q Q Q G G H A G C * - b N I K P D L V T L G K A I S G G M Y P V S C V L S S K E V M L V V - c T S S P T L S L L E R P S L V A C T L * A A F S A A R R S C W L L - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d W C * A R G Q * E Q F P W R Q H C T G Q S S R E * C C P P * A P Q - e G V D L G V K D S K S L G D R T A H V R H A A N E A A L L D H Q N N - f L M L G S R T V R P F A M E P P M Y G T L Q T R L L L S T M S T T - Bce83I Pfl1108I BamHI EarI BglII| | | | || GAGCCTGGCACTCATGGATCTACCTACGAAGTAACCCTCTAGGATCCGCTGTCTCCATCCGCGCCCTTGAGATCATGGAAGAGGAAGATCTCACTGCCAA 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CTCGGACCGTGAGTACCTAGATGGATGCTTCATTGGGAGATCCTAGGCGACAGAGGTAGGCGCGGGAACTCTAGTACCTTCTCCTTCTAGAGTGACGGTT a A W H S W I Y L R S N P L G S A V S I R A L E I M E E E D L T A K - b E P G T H G S T Y E V T L * D P L S P S A P L R S W K R K I S L P R - c S L A L M D L P T K * P S R I R C L H P R P * D H G R G R S H C Q - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d Q A Q C E H I * R R L L G R P D A T E M R A R S I M S S S S R V A L - e L R A S M S R G V F Y G E L I R Q R W G R G Q S * P L P L D * Q W - f S G P V * P D V * S T V R * S G S D G D A G K L D H F L F I E S G - Bce83I HindIII BspLU11I BsaI |BsbI BseRI BsaI BcgI | | | | | | | | GGCTGATAAGCTTGGTAACATGTTCCGTGATGGTCTCAAAGCCCTCAACACTCCTATTCTCAAGGTGATCCGAGGAAAGGGTCTCCTCAACGCTGTTGTC 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 CCGACTATTCGAACCATTGTACAAGGCACTACCAGAGTTTCGGGAGTTGTGAGGATAAGAGTTCCACTAGGCTCCTTTCCCAGAGGAGTTGCGACAACAG a A D K L G N M F R D G L K A L N T P I L K V I R G K G L L N A V V - b L I S L V T C S V M V S K P S T L L F S R * S E E R V S S T L L S - c G * * A W * H V P * W S Q S P Q H S Y S Q G D P R K G S P Q R C C H - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d A S L S P L M N R S P R L A R L V G I R L T I R P F P R R L A T T - e P Q Y A Q Y C T G H H D * L G * C E * E * P S G L F P D G * R Q Q - f L S I L K T V H E T I T E F G E V S R N E L H D S S L T E E V S N D - BseRI PstI EagI BcgI Bce83I | MscI | | | | | | ATCGACGAATCTGCAGCCAACGGCCGAACCGCCTGGGATCTGTGCTTGCTCCTCAAGAGCAAGGGTCTATTGGCCAAGCCCACTCACGGCGACATCATCC 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 TAGCTGCTTAGACGTCGGTTGCCGGCTTGGCGGACCCTAGACACGAACGAGGAGTTCTCGTTCCCAGATAACCGGTTCGGGTGAGTGCCGCTGTAGTAGG a I D E S A A N G R T A W D L C L L L K S K G L L A K P T H G D I I R - b S T N L Q P T A E P P G I C A C S S R A R V Y W P S P L T A T S S - c R R I C S Q R P N R L G S V L A P Q E Q G S I G Q A H S R R H H P - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d M S S D A A L P R V A Q S R H K S R L L L P R N A L G V * P S M M - e * R R I Q L W R G F R R P D T S A G * S C P D I P W A W E R R C * G - f D V F R C G V A S G G P I Q A Q E E L A L T * Q G L G S V A V D D - BseRI BseRI Sse8647I EcoNI | | | | | GCTTTGCACCTCCTCTAGTTATTAGCGAGGAGGACCTCAAAAAGGGCCTCAACATTATTGCCGAGGCTATCAAGGAGCTTCCTACTGTCGAGCCTGCCAA 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 CGAAACGTGGAGGAGATCAATAATCGCTCCTCCTGGAGTTTTTCCCGGAGTTGTAATAACGGCTCCGATAGTTCCTCGAAGGATGACAGCTCGGACGGTT a F A P P L V I S E E D L K K G L N I I A E A I K E L P T V E P A K - b A L H L L * L L A R R T S K R A S T L L P R L S R S F L L S S L P S - c L C T S S S Y * R G G P Q K G P Q H Y C R G Y Q G A S Y C R A C Q - 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 d R K A G G R T I L S S S R L F P R L M I A S A I L S S G V T S G A L - e S Q V E E L * * R P P G * F P G * C * Q R P * * P A E * Q R A Q W - f A K C R R * N N A L L V E F L A E V N N G L S D L L K R S D L R G - RcaI Bpu10I | | GCACCACTAATCATGATGTTGGGTAAAATCTGCGAGCCCTGAGCGCAATCTCTGGATATGATGGGAACTAGGAAAATGGCGTTTGTGATTTTGGTCAAGC 1401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1500 CGTGGTGATTAGTACTACAACCCATTTTAGACGCTCGGGACTCGCGTTAGAGACCTATACTACCCTTGATCCTTTTACCGCAAACACTAAAACCAGTTCG a H H * S * C W V K S A S P E R N L W I * W E L G K W R L * F W S S - b T T N H D V G * N L R A L S A I S G Y D G N * E N G V C D F G Q A - c A P L I M M L G K I C E P * A Q S L D M M G T R K M A F V I L V K H - 1401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1500 d C W * D H H Q T F D A L G S R L R Q I H H S S P F H R K H N Q D L - e A G S I M I N P L I Q S G Q A C D R S I I P V L F I A N T I K T L - f L V V L * S T P Y F R R A R L A I E P Y S P F * S F P T Q S K P * A - NsiI XcmI | | ACCGAGTACCATACTCGGAGAGCATAGCGAAATGATGTACGTTCGAGATGCATAACAAGAGGCTAACCAGCACTCTTGTGGGCGTTTGTGGGATTCCATG 1501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1600 TGGCTCATGGTATGAGCCTCTCGTATCGCTTTACTACATGCAAGCTCTACGTATTGTTCTCCGATTGGTCGTGAGAACACCCGCAAACACCCTAAGGTAC a T E Y H T R R A * R N D V R S R C I T R G * P A L L W A F V G F H V - b P S T I L G E H S E M M Y V R D A * Q E A N Q H S C G R L W D S M - c R V P Y S E S I A K * C T F E M H N K R L T S T L V G V C G I P C - 1501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1600 d V S Y W V R L A Y R F S T R E L H M V L P * G A S K H A N T P N W - e C R T G Y E S L M A F H H V N S I C L L L S V L V R T P T Q P I G H - f G L V M S P S C L S I I Y T R S A Y C S A L W C E Q P R K H S E M - XhoI | TCGGCTAGGTAGCCTTGAACGAGTTGAATACCCCAATGAATTGAAACTGCTAAATGATATTGCTAAAAAAAAAAAAAAAAACTCGAGG 1601 ---------+---------+---------+---------+---------+---------+---------+---------+-------- 1688 AGCCGATCCATCGGAACTTGCTCAACTTATGGGGTTACTTAACTTTGACGATTTACTATAACGATTTTTTTTTTTTTTTTTGAGCTCC a G * V A L N E L N T P M N * N C * M I L L K K K K K T R - b S A R * P * T S * I P Q * I E T A K * Y C * K K K K K L E - c R L G S L E R V E Y P N E L K L L N D I A K K K K K N S R - 1601 ---------+---------+---------+---------+---------+---------+---------+---------+-------- 1688 d T P * T A K F S N F V G I F Q F Q * I I N S F F F F F V R P - e R S P L R S R T S Y G L S N F S S F S I A L F F F F F E L - f D A L Y G Q V L Q I G W H I S V A L H Y Q * F F F F F S S - Enzymes that do cut: AatII AceIII AhdI ApaBI ApaLI BamHI BbsI Bce83I BcgI BglII Bpu10I Bpu1102I BsaI BsbI BseRI BsgI BsmI BsmBI BspGI BspLU11I BsrDI BssSI Bsu36I DrdII EagI EarI EciI Eco47III EcoNI EcoRI HindIII MfeI MscI NsiI Pfl1108I PstI RcaI SacI SanDI SphI Sse8647I StuI Tth111I XcmI XhoI XmnI Enzymes that do not cut: AflII AlwNI ApaI AscI AvrII BclI BfiI BglI BplI BpmI BsaBI BsaXI BsiWI BspEI BspMI BsrBI BsrGI BssHII Bst1107I BstEII BstXI ClaI DraI DraIII DrdI Eco57I EcoRV FseI FspI HgiEII HpaI KpnI MluI NarI NcoI NdeI NgoAIV NheI NotI NruI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RsrII SacII SalI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I SspI SwaI VspI XbaI