(Linear) MAP of: ./Fgr_contig0003.seq check: 9181 from: 1 to: 1109 Fgr_contig0003 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. BssSI BsaI DrdII | | | GCACGAGGCCCGACCTTACCGCGAGACCTACACCCCTATAACTCAAAAAGTCGCACGGATACGCTCGATTCATCATGGCTGCCGCAGTTGCGAACCAGCC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCGGGCTGGAATGGCGCTCTGGATGTGGGGATATTGAGTTTTTCAGCGTGCCTATGCGAGCTAAGTAGTACCGACGGCGTCAACGCTTGGTCGG a A R G P T L P R D L H P Y N S K S R T D T L D S S W L P Q L R T S P - b H E A R P Y R E T Y T P I T Q K V A R I R S I H H G C R S C E P A - c T R P D L T A R P T P L * L K K S H G Y A R F I M A A A V A N Q P - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P G V K G R S R C G * L E F L R V S V S S E D H S G C N R V L - e V L G S R V A L G V G R Y S L F D C P Y A R N M M A A A T A F W G - f C S A R G * R S V * V G I V * F T A R I R E I * * P Q R L Q S G A - AatII BsaI| DrdI || BfiI Tth111I || BplI BseRI Bpu10I | | || | | | CAAGCACGACTGGGCCGACGACGACGACGTCGAGGAGACCTCCACCGATCTCCCTGAGCCTCAGACCATCGCCAACAAGGATGGAACAAAGACCATCATC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTTCGTGCTGACCCGGCTGCTGCTGCTGCAGCTCCTCTGGAGGTGGCTAGAGGGACTCGGAGTCTGGTAGCGGTTGTTCCTACCTTGTTTCTGGTAGTAG a S T T G P T T T T S R R P P P I S L S L R P S P T R M E Q R P S S - b Q A R L G R R R R R R G D L H R S P * A S D H R Q Q G W N K D H H H - c K H D W A D D D D V E E T S T D L P E P Q T I A N K D G T K T I I - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d G L V V P G V V V V D L L G G G I E R L R L G D G V L I S C L G D D - e L C S Q A S S S S T S S V E V S R G S G * V M A L L S P V F V M M - f W A R S P R R R R R R P S R W R D G Q A E S W R W C P H F L S W * - Pfl1108I EagI BsaI | | | ACATTCCGCTACGATGACGACGGCCGCAAGGTCAAGACCGTTCGCCGCGTCCGATTCATTACCCACACCGAGACCGTAAACCCCCGCGTCGCCGACCGAA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TGTAAGGCGATGCTACTGCTGCCGGCGTTCCAGTTCTGGCAAGCGGCGCAGGCTAAGTAATGGGTGTGGCTCTGGCATTTGGGGGCGCAGCGGCTGGCTT a H S A T M T T A A R S R P F A A S D S L P T P R P * T P A S P T E - b I P L R * R R P Q G Q D R S P R P I H Y P H R D R K P P R R R P K - c T F R Y D D D G R K V K T V R R V R F I T H T E T V N P R V A D R K - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d C E A V I V V A A L D L G N A A D S E N G V G L G Y V G A D G V S - e V N R * S S S P R L T L V T R R T R N M V W V S V T F G R T A S R - f * M G S R H R R G C P * S R E G R G I * * G C R S R L G G R R R G F - XcmI MscI BamHI AlwNI HgiEII AhdI | | | | | | | AAACCTGGCCAAAGTTCGGCCTCAGTGCAAAGGATCCCCCAGGCCCTGCCCCCGACACCACCTCTGTCGGTGAGAACATCATCTTCCGACCAAGCGTCAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTTGGACCGGTTTCAAGCCGGAGTCACGTTTCCTAGGGGGTCCGGGACGGGGGCTGTGGTGGAGACAGCCACTCTTGTAGTAGAAGGCTGGTTCGCAGTT a K P G Q S S A S V Q R I P Q A L P P T P P L S V R T S S S D Q A S T - b N L A K V R P Q C K G S P R P C P R H H L C R * E H H L P T K R Q - c T W P K F G L S A K D P P G P A P D T T S V G E N I I F R P S V N - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d F G P W L E A E T C L I G W A R G G V G G R D T L V D D E S W A D - e F V Q G F N P R L A F S G G P G A G S V V E T P S F M M K R G L T L - f F R A L T R G * H L P D G L G Q G R C W R Q R H S C * R G V L R * - DrdI Bce83I BspMI AceIII | | | | | CTGGCGAAAGGCCGAGAAGGACGATACCGCCGACACTGCTACCCAGACCATGAAGGACCAGCTCAAGGACAAGCAGGTCAAGTGTCGTATTTGCAACGGT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GACCGCTTTCCGGCTCTTCCTGCTATGGCGGCTGTGACGATGGGTCTGGTACTTCCTGGTCGAGTTCCTGTTCGTCCAGTTCACAGCATAAACGTTGCCA a G E R P R R T I P P T L L P R P * R T S S R T S R S S V V F A T V - b L A K G R E G R Y R R H C Y P D H E G P A Q G Q A G Q V S Y L Q R S - c W R K A E K D D T A D T A T Q T M K D Q L K D K Q V K C R I C N G - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d V P S L G L L V I G G V S S G L G H L V L E L V L L D L T T N A V T - e Q R F A S F S S V A S V A V W V M F S W S L S L C T L H R I Q L P - f S A F P R S P R Y R R C Q * G S W S P G A * P C A P * T D Y K C R - BsrBI BsmBI NcoI NarI BcgI| Eco57I BcgI | | || | | CAGCATTTCACTGCCCGATGTCCTTACAAGGACACCATGGCGCCCATTGGAGAGAGCGGCGCTGCCGATGTCGCTGCTGGTATGGGAGACGAGCCTTCAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GTCGTAAAGTGACGGGCTACAGGAATGTTCCTGTGGTACCGCGGGTAACCTCTCTCGCCGCGACGGCTACAGCGACGACCATACCCTCTGCTCGGAAGTC a S I S L P D V L T R T P W R P L E R A A L P M S L L V W E T S L Q - b A F H C P M S L Q G H H G A H W R E R R C R C R C W Y G R R A F S - c Q H F T A R C P Y K D T M A P I G E S G A A D V A A G M G D E P S A - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L M E S G S T R V L V G H R G N S L A A S G I D S S T H S V L R * - e * C K V A R H G * L S V M A G M P S L P A A S T A A P I P S S G E - f D A N * Q G I D K C P C W P A W Q L S R R Q R H R Q Q Y P L R A K L - SacII BglI| NdeI BamHI || | | CCGCCGCGGCTGCTGGTGCCAAGAAGGGTTCATATGTTCCCCCTGCCCTGCGTGGCAACGGAAGTGCTGGCGAGAGAATGGGATCCAAGTTTGGCGAGAG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GGCGGCGCCGACGACCACGGTTCTTCCCAAGTATACAAGGGGGACGGGACGCACCGTTGCCTTCACGACCGCTCTCTTACCCTAGGTTCAAACCGCTCTC a P P R L L V P R R V H M F P L P C V A T E V L A R E W D P S L A R G - b R R G C W C Q E G F I C S P C P A W Q R K C W R E N G I Q V W R E - c A A A A G A K K G S Y V P P A L R G N G S A G E R M G S K F G E R - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d G G R S S T G L L T * I N G R G Q T A V S T S A L S H S G L K A L - e A A A A A P A L F P E Y T G G A R R P L P L A P S L I P D L N P S L - f R R P Q Q H W S P N M H E G Q G A H C R F H Q R S F P I W T Q R S - DraIII Psp1406I AceIII BglI BseRI | | | | | GGACGACTTTGCTACACTGCGTGTCACCAACGTTTCCGAGATGGCCGAGGAGGCAGAGCTGCGGGATATGTTCGAGCGTTTCGGTCGTGTCACCCGAGTG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CCTGCTGAAACGATGTGACGCACAGTGGTTGCAAAGGCTCTACCGGCTCCTCCGTCTCGACGCCCTATACAAGCTCGCAAAGCCAGCACAGTGGGCTCAC a T T L L H C V S P T F P R W P R R Q S C G I C S S V S V V S P E C - b G R L C Y T A C H Q R F R D G R G G R A A G Y V R A F R S C H P S V - c D D F A T L R V T N V S E M A E E A E L R D M F E R F G R V T R V - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d P V V K S C Q T D G V N G L H G L L C L Q P I H E L T E T T D G S H - e S S K A V S R T V L T E S I A S S A S S R S I N S R K P R T V R T - f P R S Q * V A H * W R K R S P R P P L A A P Y T R A N R D H * G L - MscI MscI RsrII Tth111I BglI | | | | | TTCTTGGCCAAGGACAGAGAGACTGGCATGGCCAAGGGTTTCGCCTTTATCAGCTTTGCGGACCGAGGCGACGCCGTCAAGGCTTGTGCGAAGATGGACG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 AAGAACCGGTTCCTGTCTCTCTGACCGTACCGGTTCCCAAAGCGGAAATAGTCGAAACGCCTGGCTCCGCTGCGGCAGTTCCGAACACGCTTCTACCTGC a S W P R T E R L A W P R V S P L S A L R T E A T P S R L V R R W T - b L G Q G Q R D W H G Q G F R L Y Q L C G P R R R R Q G L C E D G R - c F L A K D R E T G M A K G F A F I S F A D R G D A V K A C A K M D G - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d E Q G L V S L S A H G L T E G K D A K R V S A V G D L S T R L H V - e N K A L S L S V P M A L P K A K I L K A S R P S A T L A Q A F I S - f T R P W P C L S Q C P W P N R R * * S Q P G L R R R * P K H S S P R - BglI | GATTTGGTTTCAAGCATCTCATTCTCCGGGTGGAGTTTGCCAAGAAGGCTCAGTAAAAAGGTGGACGTTGCTGCTGTTTCGATCTTGTGTGCGTTGTTTA 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 CTAAACCAAAGTTCGTAGAGTAAGAGGCCCACCTCAAACGGTTCTTCCGAGTCATTTTTCCACCTGCAACGACGACAAAGCTAGAACACACGCAACAAAT a D L V S S I S F S G W S L P R R L S K K V D V A A V S I L C A L F S - b I W F Q A S H S P G G V C Q E G S V K R W T L L L F R S C V R C L - c F G F K H L I L R V E F A K K A Q * K G G R C C C F D L V C V V * - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d S K T E L M E N E P H L K G L L S L L F T S T A A T E I K H A N N - e P N P K L C R M R R T S N A L F A * Y F P P R Q Q Q K S R T H T T * - f I Q N * A D * E G P P T Q W S P E T F L H V N S S N R D Q T R Q K - Eco57I BspLU11I BsmI XmnI RcaI| | | | || GCTAGGGGGACACATGTAAGCATTCGTGGTTGATGGGGAAAACTTTCAACCTCATGATTCAATGAACCTTCAGGATAAAAAAAAAAAAAAAAACTCGGAG 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CGATCCCCCTGTGTACATTCGTAAGCACCAACTACCCCTTTTGAAAGTTGGAGTACTAAGTTACTTGGAAGTCCTATTTTTTTTTTTTTTTTTGAGCCTC a * G D T C K H S W L M G K T F N L M I Q * T F R I K K K K K T R R - b A R G T H V S I R G * W G K L S T S * F N E P S G * K K K K K L G G - c L G G H M * A F V V D G E N F Q P H D S M N L Q D K K K K K N S E - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d L * P S V H L C E H N I P F V K L R M I * H V K L I F F F F F V R L - e S P P C M Y A N T T S P S F K * G * S E I F R * S L F F F F F E S - f A L P V C T L M R P Q H P F S E V E H N L S G E P Y F F F F F S P - GGGGGGGCC 1101 --------- 1109 CCCCCCCGG a G G - b G G - c G G A - 1101 --------- 1109 d P P G - e P P A - f P P P - Enzymes that do cut: AatII AceIII AhdI AlwNI BamHI Bce83I BcgI BfiI BglI BplI Bpu10I BsaI BseRI BsmI BsmBI BspLU11I BspMI BsrBI BssSI DraIII DrdI DrdII EagI Eco57I HgiEII MscI NarI NcoI NdeI Pfl1108I Psp1406I RcaI RsrII SacII Tth111I XcmI XmnI Enzymes that do not cut: AflII ApaI ApaBI ApaLI AscI AvrII BbsI BclI BglII BpmI Bpu1102I BsaBI BsaXI BsbI BsgI BsiWI BspEI BspGI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI EarI EciI Eco47III EcoNI EcoRI EcoRV FseI FspI HindIII HpaI KpnI MfeI MluI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI PstI PvuI PvuII SacI SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XhoI