(Linear) MAP of: ./Fgr_contig0004.seq check: 1865 from: 1 to: 710 Fgr_contig0004 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. DrdI DrdII AceIII | NruI | | | | AAGCAGACAAACACCAGTGACAAACAGGGAGAACCATGAACCCTAGACAGCAACTAGATAGATACCACGACACTGCCGGACGGCGGCGTCGCGAGCTGGC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 TTCGTCTGTTTGTGGTCACTGTTTGTCCCTCTTGGTACTTGGGATCTGTCGTTGATCTATCTATGGTGCTGTGACGGCCTGCCGCCGCAGCGCTCGACCG a K Q T N T S D K Q G E P * T L D S N * I D T T T L P D G G V A S W L - b S R Q T P V T N R E N H E P * T A T R * I P R H C R T A A S R A G - c A D K H Q * Q T G R T M N P R Q Q L D R Y H D T A G R R R R E L A - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C V F V L S L C P S G H V R S L L * I S V V V S G S P P T A L Q - e A S L C W H C V P L V M F G L C C S S L Y W S V A P R R R R S S A - f L L C V G T V F L S F W S G * V A V L Y I G R C Q R V A A D R A P - Bce83I NcoI| ApaI AatII|| | ||| TGGGCCCTCGGCCTAGCCGCCGAATCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGAGGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ACCCGGGAGCCGGATCGGCGGCTTAGGCATCTCCCACGCCGGGACCGCGAACTCGCGCATCTCCTGCAGGTACCGCCACTGCCAGAACGCCGCCCGCACG a G P R P S R R I R R G C G P G A * A R R G R P W R * R S C G G R A - b W A L G L A A E S V E G A A L A L E R V E D V H G G D G L A A G V L - c G P S A * P P N P * R V R P W R L S A * R T S M A V T V L R R A C - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S P G R G L R R I R L P H P G P A Q A R L P R G H R H R D Q P P R A - e P G E A * G G F G Y L T R G Q R K L A Y L V D M A T V T K R R A H - f Q A R P R A A S D T S P A A R A S S R T S S T W P P S P R A A P T - Pfl1108I BpmI Bce83I | Tth111I | BglII SacII BsaI | | | | | | | TCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCCAGGAAGATCTTGAGCACGCCGCGGGTCTCATCGTAGATGAGCCCCGAGATGCGCTTCACGCCGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGCCACATCCACTGCCGCAGCGCCTACTGCAAGAGGTCCTTCTAGAACTCGTGCGGCGCCCAGAGTAGCATCTACTCGGGGCTCTACGCGAAGTGCGGCG a R C R * R R R G * R S P G R S * A R R G S H R R * A P R C A S R R - b G V G D G V A D D V L Q E D L E H A A G L I V D E P R D A L H A A - c S V * V T A S R M T F S R K I L S T P R V S S * M S P E M R F T P P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d R H L H R R R P H R E G P L D Q A R R P D * R L H A G L H A E R R - e E T Y T V A D R I V N E L F I K L V G R T E D Y I L G S I R K V G - f S P T P S P T A S S T R W S S R S C A A P R M T S S G R S A S * A A - BsmBI BssHII NgoAIV BglI | EciI | NarI | | | | | CACGGCGCGCGAGACGGCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCCCGCAGCACTTCCGGTGGCGCTTGGCGCCGCCCTTGCCCAGCCCCTTC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GTGCCGCGCGCTCTGCCGCCTAGCGGCCGAACCACTACGGGACCTACAACAGGGCGTCGTGAAGGCCACCGCGAACCGCGGCGGGAACGGGTCGGGGAAG a H G A R D G G S P A W * C P G C C P A A L P V A L G A A L A Q P L P - b T A R E T A D R R L G D A L D V V P Q H F R W R L A P P L P S P F - c R R A R R R I A G L V M P W M L S R S T S G G A W R R P C P A P S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d W P A R S P P D G A Q H H G P H Q G A A S G T A S P A A R A W G R - e G R R A L R R I A P K T I G Q I N D R L V E P P A Q R R G Q G A G E - f V A R S V A S R R S P S A R S T T G C C K R H R K A G G K G L G K - SacII Pfl1108I | | CCTCCCTTGCCGCGGCCCGACATCCTCGACGCTTCCCTCTCCGGCGAGATTGGCTTCTCTGTAAGTGTGGGCAAAATGGATCAGTTCGTAGACCTCCAAA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGAGGGAACGGCGCCGGGCTGTAGGAGCTGCGAAGGGAGAGGCCGCTCTAACCGAAGAGACATTCACACCCGTTTTACCTAGTCAAGCATCTGGAGGTTT a S L A A A R H P R R F P L R R D W L L C K C G Q N G S V R R P P K - b P P L P R P D I L D A S L S G E I G F S V S V G K M D Q F V D L Q K - c L P C R G P T S S T L P S P A R L A S L * V W A K W I S S * T S K - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d G E R A A A R C G R R K G R R R S Q S R Q L H P C F P D T R L G G F - e R G Q R P G V D E V S G E G A L N A E R Y T H A F H I L E Y V E L - f G G K G R G S M R S A E R E P S I P K E T L T P L I S * N T S R W - FspI ApaBI | AlwNI| | BbsI PvuII| | Bpu10I | || | | AAGGAAGGCTGTTGAAAGGCAAGAGGAAGAAGACGCAGCAGCAGCTGCGCAGAGTCGAGCCATGCCAGATATATTCAGGCTCAGGCAGATCCAGAGGAGC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TTCCTTCCGACAACTTTCCGTTCTCCTTCTTCTGCGTCGTCGTCGACGCGTCTCAGCTCGGTACGGTCTATATAAGTCCGAGTCCGTCTAGGTCTCCTCG a R K A V E R Q E E E D A A A A A Q S R A M P D I F R L R Q I Q R S - b G R L L K G K R K K T Q Q Q L R R V E P C Q I Y S G S G R S R G A - c K E G C * K A R G R R R S S S C A E S S H A R Y I Q A Q A D P E E P - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L F A T S L C S S S S A A A A A C L R A M G S I N L S L C I W L L - e F S P Q Q F A L P L L R L L L Q A S D L W A L Y I * A * A S G S S - f F P L S N F P L L F F V C C C S R L T S G H W I Y E P E P L D L P A - SacII ApaI BsaXI | BseRI | BspGI Bce83I AceIII | | | | | | | CGCGGTGGGGGCCCTGCTCAGTCTGGATCGGCGGCGATGTCCAGTGGAAGCATGTTTTCCGGGGAACAGTCAGCCAACAGCTCAAGCTAGTTCACCAATC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCGCCACCCCCGGGACGAGTCAGACCTAGCCGCCGCTACAGGTCACCTTCGTACAAAAGGCCCCTTGTCAGTCGGTTGTCGAGTTCGATCAAGTGGTTAG a R G G G P A Q S G S A A M S S G S M F S G E Q S A N S S S * F T N L - b A V G A L L S L D R R R C P V E A C F P G N S Q P T A Q A S S P I - c R W G P C S V W I G G D V Q W K H V F R G T V S Q Q L K L V H Q S - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R P P P G A * D P D A A I D L P L M N E P S C D A L L E L * N V L - e G R H P G Q E T Q I P P S T W H F C T K R P V T L W C S L S T * W D - f A T P A R S L R S R R R H G T S A H K G P F L * G V A * A L E G I - TGTAGCTAGT 701 ---------+ 710 ACATCGATCA a * L - b C S * - c V A S - 701 ---------+ 710 d R Y S T - e T A L - f Q L * - Enzymes that do cut: AatII AceIII AlwNI ApaI ApaBI BbsI Bce83I BglI BglII BpmI Bpu10I BsaI BsaXI BseRI BsmBI BspGI BssHII DrdI DrdII EciI FspI NarI NcoI NgoAIV NruI Pfl1108I PvuII SacII Tth111I Enzymes that do not cut: AflII AhdI ApaLI AscI AvrII BamHI BcgI BclI BfiI BplI Bpu1102I BsaBI BsbI BsgI BsiWI BsmI BspEI BspLU11I BspMI BsrBI BsrDI BsrGI BssSI Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII EagI EarI Eco47III Eco57I EcoNI EcoRI EcoRV FseI HgiEII HindIII HpaI KpnI MfeI MluI MscI NdeI NheI NotI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI RcaI RsrII SacI SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XcmI XhoI XmnI