(Linear) MAP of: ./Fgr_contig0014.seq check: 4613 from: 1 to: 1407 Fgr_contig0014 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. BglII | CCCCCCCTTCGAGTTTTTTTTTTTTTTTTTTCTGCTTGTTACGGTATTTTCATTATATCGTTACTTCAAGTAACCCAAGAATCAACTACATACGAGATCT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GGGGGGGAAGCTCAAAAAAAAAAAAAAAAAAGACGAACAATGCCATAAAAGTAATATAGCAATGAAGTTCATTGGGTTCTTAGTTGATGTATGCTCTAGA a P P L R V F F F F F S A C Y G I F I I S L L Q V T Q E S T T Y E I C - b P P F E F F F F F F L L V T V F S L Y R Y F K * P K N Q L H T R S - c P P S S F F F F F F C L L R Y F H Y I V T S S N P R I N Y I R D L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d G G K S N K K K K K R S T V T N E N Y R * K L Y G L F * S C V L D - e G R R T K K K K K E A Q * P I K M I D N S * T V W S D V V Y S I - f G G E L K K K K K K Q K N R Y K * * I T V E L L G L I L * M R S R - DrdII BsbI | | GTGGTTCTGTACTTGCTATATTTGTTATGTCGTCGTGTTGTTATACTTGATGCTTTACAACTCGTCCTTGACTTCCTCGACCTTCTCCTTAACCTGCTCG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CACCAAGACATGAACGATATAAACAATACAGCAGCACAACAATATGAACTACGAAATGTTGAGCAGGAACTGAAGGAGCTGGAAGAGGAATTGGACGAGC a G S V L A I F V M S S C C Y T * C F T T R P * L P R P S P * P A R - b V V L Y L L Y L L C R R V V I L D A L Q L V L D F L D L L L N L L D - c W F C T C Y I C Y V V V L L Y L M L Y N S S L T S S T F S L T C S - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d T T R Y K S Y K N H R R T T I S S A K C S T R S K R S R R R L R S - e Q P E T S A I N T I D D H Q * V Q H K V V R G Q S G R G E G * G A R - f H N Q V Q * I Q * T T T N N Y K I S * L E D K V E E V K E K V Q E - Eco57I PshAI BspMI | BbsI | XcmI | | | | | ACTTTCTCATCGGCCTTCTTCAGCACAAACTTGCGAAGGACATTGGTCTTCTGCTGGATCTGGTCGCGCTTTGAAGGAGCCAAACCGCCCTTGGCAAGAA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TGAAAGAGTAGCCGGAAGAAGTCGTGTTTGAACGCTTCCTGTAACCAGAAGACGACCTAGACCAGCGCGAAACTTCCTCGGTTTGGCGGGAACCGTTCTT a L S H R P S S A Q T C E G H W S S A G S G R A L K E P N R P W Q E - b F L I G L L Q H K L A K D I G L L L D L V A L * R S Q T A L G K N - c T F S S A F F S T N L R R T L V F C W I W S R F E G A K P P L A R I - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S K R M P R R * C L S A F S M P R R S S R T A S Q L L W V A R P L F - e S E * R G E E A C V Q S P C Q D E A P D P R A K F S G F R G Q C S - f V K E D A K K L V F K R L V N T K Q Q I Q D R K S P A L G G K A L - BfiI Tth111I| SacI BsaI BsaXI|| Bpu1102I| ScaI BbsI | ||| || | | TACCATCCAGGCGACCAAGCTCCTTGGAGACCCAGTCGTTGTTGGAGCTCAGCTTGTCAAAGACACGAACATAGTACTCGGCGTAGGTCTTCTGAGCAGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 ATGGTAGGTCCGCTGGTTCGAGGAACCTCTGGGTCAGCAACAACCTCGAGTCGAACAGTTTCTGTGCTTGTATCATGAGCCGCATCCAGAAGACTCGTCG a Y H P G D Q A P W R P S R C W S S A C Q R H E H S T R R R S S E Q H - b T I Q A T K L L G D P V V V G A Q L V K D T N I V L G V G L L S S - c P S R R P S S L E T Q S L L E L S L S K T R T * Y S A * V F * A A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d V M W A V L S R P S G T T T P A * S T L S V F M T S P T P R R L L - e Y W G P S W A G Q L G L R Q Q L E A Q * L C S C L V R R L D E S C - f I G D L R G L E K S V W D N N S S L K D F V R V Y Y E A Y T K Q A A - BssSI StuI SgrAI MscI | XbaI | | | | | ATCAGTGAGGCCTTCGACCTCCTTCTTGACCTCGGCGGCAATCTCAGCGATGGTAGCACCGCCGGTGATCTTGGCCACGAGGGTGTCTAGAGACTCAACG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TAGTCACTCCGGAAGCTGGAGGAAGAACTGGAGCCGCCGTTAGAGTCGCTACCATCGTGGCGGCCACTAGAACCGGTGCTCCCACAGATCTCTGAGTTGC a Q * G L R P P S * P R R Q S Q R W * H R R * S W P R G C L E T Q R - b I S E A F D L L L D L G G N L S D G S T A G D L G H E G V * R L N G - c S V R P S T S F L T S A A I S A M V A P P V I L A T R V S R D S T - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d M L S A K S R R R S R P P L R L S P L V A P S R P W S P T * L S L - e C * H P R R G G E Q G R R C D * R H Y C R R H D Q G R P H R S V * R - f D T L G E V E K K V E A A I E A I T A G G T I K A V L T D L S E V - Pfl1108I KpnI Tth111I BsbI StuI BsrBI | | | | | | | GTACCAGCGACGTTGTCAAGACCACCACCGACAACACGGTGAGTTCCTGCCTTCTCGTTGATCCAGTCAACAAAGGCCTGCTCGGTACGTCCGCTCTCGT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CATGGTCGCTGCAACAGTTCTGGTGGTGGCTGTTGTGCCACTCAAGGACGGAAGAGCAACTAGGTCAGTTGTTTCCGGACGAGCCATGCAGGCGAGAGCA a Y Q R R C Q D H H R Q H G E F L P S R * S S Q Q R P A R Y V R S R - b T S D V V K T T T D N T V S S C L L V D P V N K G L L G T S A L V - c V P A T L S R P P P T T R * V P A F S L I Q S T K A C S V R P L S * - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d P V L S T T L V V V S L V T L E Q R R T S G T L L P R S P V D A R T - e Y W R R Q * S W W R C C P S N R G E R Q D L * C L G A R Y T R E R - f T G A V N D L G G G V V R H T G A K E N I W D V F A Q E T R G S E - DrdII PflMI Eco57I | | | AGGCGACAGCCTCCTTGCTACCAGCAGGGAACCACTTGATGGTGGGGTAGGACTTGACACCCTGCTGCTCGGCGGTGGCCTTGCTGTTGGGAGCTTCAGC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TCCGCTGTCGGAGGAACGATGGTCGTCCCTTGGTGAACTACCACCCCATCCTGAACTGTGGGACGACGAGCCGCCACCGGAACGACAACCCTCGAAGTCG a R R Q P P C Y Q Q G T T * W W G R T * H P A A R R W P C C W E L Q H - b G D S L L A T S R E P L D G G V G L D T L L L G G G L A V G S F S - c A T A S L L P A G N H L M V G * D L T P C C S A V A L L L G A S A - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P S L R R A V L L S G S S P P T P S S V R S S P P P R A T P L K L - e L R C G G Q * W C P V V Q H H P L V Q C G A A R R H G Q Q Q S S * - f Y A V A E K S G A P F W K I T P Y S K V G Q Q E A T A K S N P A E A - DrdI Sse8647I BcgI BcgI | | | | ATCGACCTTGGCGATGACGACGTTCTTGTCATTGGCGAATGTGGCAGCGAGGTCCTCCCAGGTAGGGGCGAGAGTCTTGCAGTGTCCACACCAGGGAGCA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TAGCTGGAACCGCTACTGCTGCAAGAACAGTAACCGCTTACACCGTCGCTCCAGGAGGGTCCATCCCCGCTCTCAGAACGTCACAGGTGTGGTCCCTCGT a R P W R * R R S C H W R M W Q R G P P R * G R E S C S V H T R E Q - b I D L G D D D V L V I G E C G S E V L P G R G E S L A V S T P G S S - c S T L A M T T F L S L A N V A A R S S Q V G A R V L Q C P H Q G A - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d M S R P S S S T R T M P S H P L S T R G P L P S L R A T D V G P L - e C R G Q R H R R E Q * Q R I H C R P G G L Y P R S D Q L T W V L S C - f D V K A I V V N K D N A F T A A L D E W T P A L T K C H G C W P A - Bce83I BstEII | HindIII | | | GTAAAGGCAACAAGAATGTGCTTGTCACTGCCAACGGTCTTGGAGAAGGTAGCATCGTTGAGGTAGGTAACCTCGCTGGGCATCTCAAGCTTCTTCTTGG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 CATTTCCGTTGTTCTTACACGAACAGTGACGGTTGCCAGAACCTCTTCCATCGTAGCAACTCCATCCATTGGAGCGACCCGTAGAGTTCGAAGAAGAACC a * R Q Q E C A C H C Q R S W R R * H R * G R * P R W A S Q A S S W - b K G N K N V L V T A N G L G E G S I V E V G N L A G H L K L L L G - c V K A T R M C L S L P T V L E K V A S L R * V T S L G I S S F F L D - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d L L P L L F T S T V A L P R P S P L M T S T P L R A P C R L S R R P - e Y L C C S H A Q * Q W R D Q L L Y C R Q P L Y G R Q A D * A E E Q - f T F A V L I H K D S G V T K S F T A D N L Y T V E S P M E L K K K - PshAI BsrDI BseRI BbsI | BpmI | EagI | BsaXI | | | | | | | ACTTGACACCAGTCTTCTCAGCAATGAAAGTGGTCAAGCTCTCCAGGTCACGGCCGGACTTGTACTCCTCGGGCTTTGCACTCTTTCCATCAAAGAACTT 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 TGAACTGTGGTCAGAAGAGTCGTTACTTTCACCAGTTCGAGAGGTCCAGTGCCGGCCTGAACATGAGGAGCCCGAAACGTGAGAAAGGTAGTTTCTTGAA a T * H Q S S Q Q * K W S S S P G H G R T C T P R A L H S F H Q R T * - b L D T S L L S N E S G Q A L Q V T A G L V L L G L C T L S I K E L - c L T P V F S A M K V V K L S R S R P D L Y S S G F A L F P S K N L - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d S S V L R R L L S L P * A R W T V A P S T S R P S Q V R E M L S S - e V Q C W D E * C H F H D L E G P * P R V Q V G R A K C E K W * L V - f S K V G T K E A I F T T L S E L D R G S K Y E E P K A S K G D F F K - Bce83I EcoRI| BcgI || SacI BcgI SalI BspGI Pfl1108I | || | | | | | GAGAGTAGGGAAACCCTGAATTCCGAATCGCTTGCCGAGCTCACGATGGGCGTCGGCGTCGACCTTTGCAATCTGGACCTTGCCCTTGGCAGACTCGTAG 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CTCTCATCCCTTTGGGACTTAAGGCTTAGCGAACGGCTCGAGTGCTACCCGCAGCCGCAGCTGGAAACGTTAGACCTGGAACGGGAACCGTCTGAGCATC a E * G N P E F R I A C R A H D G R R R R P L Q S G P C P W Q T R R - b E S R E T L N S E S L A E L T M G V G V D L C N L D L A L G R L V G - c R V G K P * I P N R L P S S R W A S A S T F A I W T L P L A D S * - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d S L L S V R F E S D S A S S V I P T P T S R Q L R S R A R P L S T - e Q S Y P F G S N R I A Q R A * S P R R R R G K C D P G Q G Q C V R L - f L T P F G Q I G F R K G L E R H A D A D V K A I Q V K G K A S E Y - PflMI HindIII MscI NcoI| EcoRI | | || | GTGTTTGCAAGATCCTCCCAGACGGGAGCAAGCTTCTTACAATGGCCACACCATGGGGCGAAGAATTCGACGAGGGTAGGCTTGCCGGACTTGAGAACGA 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 CACAAACGTTCTAGGAGGGTCTGCCCTCGTTCGAAGAATGTTACCGGTGTGGTACCCCGCTTCTTAAGCTGCTCCCATCCGAACGGCCTGAACTCTTGCT a C L Q D P P R R E Q A S Y N G H T M G R R I R R G * A C R T * E R - b V C K I L P D G S K L L T M A T P W G E E F D E G R L A G L E N D - c V F A R S S Q T G A S F L Q W P H H G A K N S T R V G L P D L R T M - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d P T Q L I R G S P L L S R V I A V G H P S S N S S P L S A P S S F S - e H K C S G G L R S C A E * L P W V M P R L I R R P Y A Q R V Q S R - f T N A L D E W V P A L K K C H G C W P A F F E V L T P K G S K L V - Bce83I EciI NarI DrdII | | | | TGTCGTCAAAGTTGGAGGGGAGCAGTTCGATGACGGCGGATTTAGCTGCAACGGTGGCGGCGAGGGCGCCGAGCACGAAGCTCTTGATGAGAACCATGTT 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 ACAGCAGTTTCAACCTCCCCTCGTCAAGCTACTGCCGCCTAAATCGACGTTGCCACCGCCGCTCCCGCGGCTCGTGCTTCGAGAACTACTCTTGGTACAA a C R Q S W R G A V R * R R I * L Q R W R R G R R A R S S * * E P C W - b V V K V G G E Q F D D G G F S C N G G G E G A E H E A L D E N H V - c S S K L E G S S S M T A D L A A T V A A R A P S T K L L M R T M L - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d T T L T P P S C N S S P P N L Q L P P P S P A S C S A R S S F W T - e H R * L Q L P A T R H R R I * S C R H R R P R R A R L E Q H S G H - f I D D F N S P L L E I V A S K A A V T A A L A G L V F S K I L V M N - BseRI | GGATGAACTTTGGTCCGATTGGCGTTGTTGGATGAAAGAGAAAGGTAGGAACAAGACTAACCAGAGCACAATCTTGCGAGGAGATGTGCTTTGTTTCTGC 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 CCTACTTGAAACCAGGCTAACCGCAACAACCTACTTTCTCTTTCCATCCTTGTTCTGATTGGTCTCGTGTTAGAACGCTCCTCTACACGAAACAAAGACG a M N F G P I G V V G * K R K V G T R L T R A Q S C E E M C F V S A - b G * T L V R L A L L D E R E R * E Q D * P E H N L A R R C A L F L P - c D E L W S D W R C W M K E K G R N K T N Q S T I L R G D V L C F C - 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 d P H V K T R N A N N S S L S L Y S C S * G S C L R A L L H A K N R - e Q I F K P G I P T T P H F L F T P V L S V L A C D Q S S I H K T E A - f S S S Q D S Q R Q Q I F S F P L F L V L W L V I K R P S T S Q K Q - BssSI | CTCGTGC 1401 ------- 1407 GAGCACG a S C - b R - c L V - 1401 ------- 1407 d G R A - e E H - f R T - Enzymes that do cut: BbsI Bce83I BcgI BfiI BglII BpmI Bpu1102I BsaI BsaXI BsbI BseRI BspGI BspMI BsrBI BsrDI BssSI BstEII DrdI DrdII EagI EciI Eco57I EcoRI HindIII KpnI MscI NarI NcoI Pfl1108I PflMI PshAI SacI SalI ScaI SgrAI Sse8647I StuI Tth111I XbaI XcmI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BclI BglI BplI Bpu10I BsaBI BsgI BsiWI BsmI BsmBI BspEI BspLU11I BsrGI BssHII Bst1107I BstXI Bsu36I ClaI DraI DraIII EarI Eco47III EcoNI EcoRV FseI FspI HgiEII HpaI MfeI MluI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PinAI PmeI PmlI Psp1406I PstI PvuI PvuII RcaI RsrII SacII SanDI SapI SexAI SfiI SgfI SmaI SnaBI SpeI SphI SrfI Sse8387I SspI SwaI VspI XhoI XmnI