(Linear) MAP of: ./Fgr_contig0015.seq check: 3577 from: 1 to: 1464 Fgr_contig0015 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. EarI BstXI BssSI BsmBI | NcoI| DrdII | | | || | GCACGAGGCGTCTCTTCTTTTCCCCTTTCCCATACACACACCGTAATCCACAGCCATGGAGGAAGAAGTTGCTGCTCTCGTCATTGACAATGGTTCGGGT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCGCAGAGAAGAAAAGGGGAAAGGGTATGTGTGTGGCATTAGGTGTCGGTACCTCCTTCTTCAACGACGAGAGCAGTAACTGTTACCAAGCCCA a A R G V S S F P L S H T H T V I H S H G G R S C C S R H * Q W F G Y - b H E A S L L F P F P I H T P * S T A M E E E V A A L V I D N G S G - c T R R L F F S P F P Y T H R N P Q P W R K K L L L S S L T M V R V - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C S A D R R K G K G M C V G Y D V A M S S S T A A R T M S L P E P - e R P T E E K G R E W V C V T I W L W P P L L Q Q E R * Q C H N P - f V L R R K K E G K G Y V C R L G C G H L F F N S S E D N V I T R T - SgrAI AceIII NcoI RcaI | | | | ATGTGCAAGGCCGGTTTCGCCGGTGATGATGCTCCCCGAGCTGTTTTCCCTTCCATTGTCGGTCGCCCCCGTCACCATGGTATCATGATCGGTATGGGTC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TACACGTTCCGGCCAAAGCGGCCACTACTACGAGGGGCTCGACAAAAGGGAAGGTAACAGCCAGCGGGGGCAGTGGTACCATAGTACTAGCCATACCCAG a V Q G R F R R * * C S P S C F P F H C R S P P S P W Y H D R Y G S - b M C K A G F A G D D A P R A V F P S I V G R P R H H G I M I G M G Q - c C A R P V S P V M M L P E L F S L P L S V A P V T M V S * S V W V - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d I H L A P K A P S S A G R A T K G E M T P R G R * W P I M I P I P - e Y T C P R N R R H H H E G L Q K G K W Q R D G G D G H Y * S R Y P D - f H A L G T E G T I I S G S S N E R G N D T A G T V M T D H D T H T - BsbI BfiI | | AGAAGGACTCTTACGTTGGTGATGAGGCTCAGTCCAAGCGTGGTATCCTCACACTGCGATACCCCATCGAGCACGGTGTTGTTACCAACTGGGACGACAT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TCTTCCTGAGAATGCAACCACTACTCCGAGTCAGGTTCGCACCATAGGAGTGTGACGCTATGGGGTAGCTCGTGCCACAACAATGGTTGACCCTGCTGTA a E G L L R W * * G S V Q A W Y P H T A I P H R A R C C Y Q L G R H - b K D S Y V G D E A Q S K R G I L T L R Y P I E H G V V T N W D D M - c R R T L T L V M R L S P S V V S S H C D T P S S T V L L P T G T T W - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d * F S E * T P S S A * D L R P I R V S R Y G M S C P T T V L Q S S M - e S P S K R Q H H P E T W A H Y G * V A I G W R A R H Q * W S P R C - f L L V R V N T I L S L G L T T D E C Q S V G D L V T N N G V P V V - AceIII BseRI BsaXI | | | GGAGAAGATTTGGCACCACACCTTCTACAACGAGCTGCGTGTCGCCCCCGAGGAGCACCCCGTCCTGCTCACCGAGGCTCCCATCAACCCCAAGTCCAAC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CCTCTTCTAAACCGTGGTGTGGAAGATGTTGCTCGACGCACAGCGGGGGCTCCTCGTGGGGCAGGACGAGTGGCTCCGAGGGTAGTTGGGGTTCAGGTTG a G E D L A P H L L Q R A A C R P R G A P R P A H R G S H Q P Q V Q P - b E K I W H H T F Y N E L R V A P E E H P V L L T E A P I N P K S N - c R R F G T T P S T T S C V S P P R S T P S C S P R L P S T P S P T - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S F I Q C W V K * L S S R T A G S S C G T R S V S A G M L G L D L - e P S S K A G C R R C R A A H R G R P A G R G A * R P E W * G W T W - f H L L N P V V G E V V L Q T D G G L L V G D Q E G L S G D V G L G V - BbsI BsaI BsmBI PinAI | | | | CGTGAGAAGATGACCCAGATTGTCTTCGAGACCTTCAACGCCCCCGCTTTCTACGTCTCTATCCAGGCCGTTCTGTCCCTGTACGCCTCCGGTCGTACCA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GCACTCTTCTACTGGGTCTAACAGAAGCTCTGGAAGTTGCGGGGGCGAAAGATGCAGAGATAGGTCCGGCAAGACAGGGACATGCGGAGGCCAGCATGGT a * E D D P D C L R D L Q R P R F L R L Y P G R S V P V R L R S Y H - b R E K M T Q I V F E T F N A P A F Y V S I Q A V L S L Y A S G R T T - c V R R * P R L S S R P S T P P L S T S L S R P F C P C T P P V V P - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R S F I V W I T K S V K L A G A K * T E I W A T R D R Y A E P R V - e G H S S S G S Q R R S R * R G R K R R R * G P R E T G T R R R D Y W - f T L L H G L N D E L G E V G G S E V D R D L G N Q G Q V G G T T G - BspGI BsrDI SalI | | | CCGGTATCGTTCTGGACTCTGGTGATGGTGTCACTCACGTTGTCCCCATTTACGAGGGTTTCGCCCTTCCCCACGCCATTGCCCGTGTCGACATGGCTGG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GGCCATAGCAAGACCTGAGACCACTACCACAGTGAGTGCAACAGGGGTAAATGCTCCCAAAGCGGGAAGGGGTGCGGTAACGGGCACAGCTGTACCGACC a R Y R S G L W * W C H S R C P H L R G F R P S P R H C P C R H G W - b G I V L D S G D G V T H V V P I Y E G F A L P H A I A R V D M A G - c P V S F W T L V M V S L T L S P F T R V S P F P T P L P V S T W L V - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d V P I T R S E P S P T V * T T G M * S P K A R G W A M A R T S M A P - e R Y R E P S Q H H H * E R Q G W K R P N R G E G R W Q G H R C P Q - f G T D N Q V R T I T D S V N D G N V L T E G K G V G N G T D V H S - RcaI Bpu1102I BsaXI | | | TCGTGATCTTACCGACTACCTCATGAAGATTCTTGCTGAGCGCGGTTACACCTTCTCCACCACTGCCGAGCGAGAAATCGTCCGTGACATCAAGGAGAAG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AGCACTAGAATGGCTGATGGAGTACTTCTAAGAACGACTCGCGCCAATGTGGAAGAGGTGGTGACGGCTCGCTCTTTAGCAGGCACTGTAGTTCCTCTTC a S * S Y R L P H E D S C * A R L H L L H H C R A R N R P * H Q G E A - b R D L T D Y L M K I L A E R G Y T F S T T A E R E I V R D I K E K - c V I L P T T S * R F L L S A V T P S P P L P S E K S S V T S R R S - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R S R V S * R M F I R A S R P * V K E V V A S R S I T R S M L S F - e D H D * R S G * S S E Q Q A R N C R R W W Q R A L F R G H C * P S - f T T I K G V V E H L N K S L A T V G E G G S G L S F D D T V D L L L - BpmI SacI | | CTCTGCTACGTCGCCCTTGACTTCGAGCAGGAGATCCAGACTGCTGCCCAGAGCTCCAGCTTGGAGAAGTCTTACGAGCTTCCTGACGGTCAGGTTATCA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GAGACGATGCAGCGGGAACTGAAGCTCGTCCTCTAGGTCTGACGACGGGTCTCGAGGTCGAACCTCTTCAGAATGCTCGAAGGACTGCCAGTCCAATAGT a L L R R P * L R A G D P D C C P E L Q L G E V L R A S * R S G Y H - b L C Y V A L D F E Q E I Q T A A Q S S S L E K S Y E L P D G Q V I T - c S A T S P L T S S R R S R L L P R A P A W R S L T S F L T V R L S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d S Q * T A R S K S C S I W V A A W L E L K S F D * S S G S P * T I - e A R S R R G Q S R A P S G S Q Q G S S W S P S T K R A E Q R D P * * - f E A V D G K V E L L L D L S S G L A G A Q L L R V L K R V T L N D - Bsu36I EarI BsrBI Bce83I RcaI | | | | | CCATTGGTAACGAGCGATTCCGTGCTCCTGAGGCTCTCTTCCAGCCTTCTGTCCTTGGTCTTGAGAGCGGTGGTATCCACGTCACCACTTTCAACTCCAT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GGTAACCATTGCTCGCTAAGGCACGAGGACTCCGAGAGAAGGTCGGAAGACAGGAACCAGAACTCTCGCCACCATAGGTGCAGTGGTGAAAGTTGAGGTA a H W * R A I P C S * G S L P A F C P W S * E R W Y P R H H F Q L H - b I G N E R F R A P E A L F Q P S V L G L E S G G I H V T T F N S I - c P L V T S D S V L L R L S S S L L S L V L R A V V S T S P L S T P S - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d V M P L S R N R A G S A R K W G E T R P R S L P P I W T V V K L E M - e W Q Y R A I G H E Q P E R G A K Q G Q D Q S R H Y G R * W K * S W - f G N T V L S E T S R L S E E L R R D K T K L A T T D V D G S E V G - KpnI BsaI | | CATGAAGTGTGATGTCGATGTCCGAAAGGATCTCTACGGAAACATTGTCATGTCTGGTGGTACCACCATGTACCCCGGTCTCTCCGACCGTATGCAGAAG 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 GTACTTCACACTACAGCTACAGGCTTTCCTAGAGATGCCTTTGTAACAGTACAGACCACCATGGTGGTACATGGGGCCAGAGAGGCTGGCATACGTCTTC a H E V * C R C P K G S L R K H C H V W W Y H H V P R S L R P Y A E G - b M K C D V D V R K D L Y G N I V M S G G T T M Y P G L S D R M Q K - c * S V M S M S E R I S T E T L S C L V V P P C T P V S P T V C R R - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d M F H S T S T R F S R * P F M T M D P P V V M Y G P R E S R I C F - e * S T H H R H G F P D R R F C Q * T Q H Y W W T G R D R R G Y A S - f D H L T I D I D S L I E V S V N D H R T T G G H V G T E G V T H L L - BsrDI BseRI | ScaI DrdII | | | | GAGATCACTGCTCTTGCTCCTTCTTCCATGAAGGTCAAGATCATTGCTCCTCCCGAGCGAAAGTACTCCGTCTGGATCGGTGGTTCCATTCTCGCTTCCC 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CTCTAGTGACGAGAACGAGGAAGAAGGTACTTCCAGTTCTAGTAACGAGGAGGGCTCGCTTTCATGAGGCAGACCTAGCCACCAAGGTAAGAGCGAAGGG a D H C S C S F F H E G Q D H C S S R A K V L R L D R W F H S R F P - b E I T A L A P S S M K V K I I A P P E R K Y S V W I G G S I L A S L - c R S L L L L L L P * R S R S L L L P S E S T P S G S V V P F S L P - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d S I V A R A G E E M F T L I M A G G S R F Y E T Q I P P E M R A E - e P S * Q E Q E K K W S P * S * Q E E R A F T S R R S R H N W E R K G - f L D S S K S R R G H L D L D N S R G L S L V G D P D T T G N E S G - BsrBI | TGTCCACCTTCCAGCAAATGTGGATCTCCAAGCAGGAGTACGACGAGAGCGGTCCTTCAATCGTTCACCGCAAGTGCTTCTAAGCTACCCGACCGACAAA 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 ACAGGTGGAAGGTCGTTTACACCTAGAGGTTCGTCCTCATGCTGCTCTCGCCAGGAAGTTAGCAAGTGGCGTTCACGAAGATTCGATGGGCTGGCTGTTT a V H L P A N V D L Q A G V R R E R S F N R S P Q V L L S Y P T D K - b S T F Q Q M W I S K Q E Y D E S G P S I V H R K C F * A T R P T N - c C P P S S K C G S P S R S T T R A V L Q S F T A S A S K L P D R Q I - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d R D V K W C I H I E L C S Y S S L P G E I T * R L H K * A V R G V F - e T W R G A F T S R W A P T R R S R D K L R E G C T S R L * G V S L - f Q G G E L L H P D G L L L V V L A T R * D N V A L A E L S G S R C - HindIII Bpu1102I | MscI Pfl1108I | | | | TTAAATCCTCCCACTCGCCTAACGACAAGATCATGGAGGTGGCGACAGACGCTAAGCTTTGGGTGGTTGGCCAACGTCAATGTCGAATCTCGTATCTACG 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 AATTTAGGAGGGTGAGCGGATTGCTGTTCTAGTACCTCCACCGCTGTCTGCGATTCGAAACCCACCAACCGGTTGCAGTTACAGCTTAGAGCATAGATGC a L N P P T R L T T R S W R W R Q T L S F G W L A N V N V E S R I Y E - b * I L P L A * R Q D H G G G D R R * A L G G W P T S M S N L V S T - c K S S H S P N D K I M E V A T D A K L W V V G Q R Q C R I S Y L R - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d * I R G S A * R C S * P P P S L R * A K P P Q G V D I D F R T D V - e N F G G V R R V V L D H L H R C V S L K P H N A L T L T S D R I * - f I L D E W E G L S L I M S T A V S A L S Q T T P W R * H R I E Y R R - Tth111I EarI AvrII | | | AAAAGTTTTTGACATGGTCGAAAGAGTGGGCGTTGCGCTTGTTACGAAGAGATGTGATGGCCCCTTTTCTTGTAGTTCGCGTATAATGCGTGCCTAGGGG 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 TTTTCAAAAACTGTACCAGCTTTCTCACCCGCAACGCGAACAATGCTTCTCTACACTACCGGGGAAAAGAACATCAAGCGCATATTACGCACGGATCCCC a K F L T W S K E W A L R L L R R D V M A P F L V V R V * C V P R G - b K S F * H G R K S G R C A C Y E E M * W P L F L * F A Y N A C L G V - c K V F D M V E R V G V A L V T K R C D G P F S C S S R I M R A * G - 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 d F L K Q C P R F L P R Q A Q * S S I H H G R K K Y N A Y L A H R P - e S F N K V H D F S H A N R K N R L S T I A G K R T T R T Y H T G L P - f F T K S M T S L T P T A S T V F L H S P G K E Q L E R I I R A * P - XhoI | TAGAAGCCGAGGTTGACCATACAAAACTTTTTTACTTTCCGAAAAAAAAAAAAAAAACTCGAGG 1401 ---------+---------+---------+---------+---------+---------+---- 1464 ATCTTCGGCTCCAACTGGTATGTTTTGAAAAAATGAAAGGCTTTTTTTTTTTTTTTTGAGCTCC a R S R G * P Y K T F L L S E K K K K N S R - b E A E V D H T K L F Y F P K K K K K T R - c * K P R L T I Q N F F T F R K K K K K L E - 1401 ---------+---------+---------+---------+---------+---------+---- 1464 d T S A S T S W V F S K * K G F F F F F V R P - e L L R P Q G Y L V K K S E S F F F F F E L - f Y F G L N V M C F K K V K R F F F F F S S - Enzymes that do cut: AceIII AvrII BbsI Bce83I BfiI BpmI Bpu1102I BsaI BsaXI BsbI BseRI BsmBI BspGI BsrBI BsrDI BssSI BstXI Bsu36I DrdII EarI HindIII KpnI MscI NcoI Pfl1108I PinAI RcaI SacI SalI ScaI SgrAI Tth111I XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI BamHI BcgI BclI BglI BglII BplI Bpu10I BsaBI BsgI BsiWI BsmI BspEI BspLU11I BspMI BsrGI BssHII Bst1107I BstEII ClaI DraI DraIII DrdI EagI EciI Eco47III Eco57I EcoNI EcoRI EcoRV FseI FspI HgiEII HpaI MfeI MluI NarI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RsrII SacII SanDI SapI SexAI SfiI SgfI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XcmI XmnI