(Linear) MAP of: ./Fgr_contig0017.seq check: 5911 from: 1 to: 1536 Fgr_contig0017 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. BssHII NarI BcgI Pfl1108I NsiI BcgI Bpu10I | | | | | | | | CGGCCTGGTGGGGGAGATTGGCGCCGCCGCTGTCTACGAGGTAGATGCATGGCAATTTGTTTTCTCTGGCAACGGCCTGAGCGCGCAAGTGCTTCTTGAC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GCCGGACCACCCCCTCTAACCGCGGCGGCGACAGATGCTCCATCTACGTACCGTTAAACAAAAGAGACCGTTGCCGGACTCGCGCGTTCACGAAGAACTG a R P G G G D W R R R C L R G R C M A I C F L W Q R P E R A S A S * L - b G L V G E I G A A A V Y E V D A W Q F V F S G N G L S A Q V L L D - c A W W G R L A P P L S T R * M H G N L F S L A T A * A R K C F L T - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d P R T P S I P A A A T * S T S A H C N T K E P L P R L A C T S R S - e G P P P S Q R R R Q R R P L H M A I Q K R Q C R G S R A L A E Q - f A Q H P L N A G G S D V L Y I C P L K N E R A V A Q A R L H K K V - PshAI BsbI Eco57I | | | TGTAATGGGATAATATGTACCGCCCTTGACAGTGCTATCATTGGCGACAATGACACAAGTCACGCCCTCGACAACACCCACACCTGTGATGATACCACCT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ACATTACCCTATTATACATGGCGGGAACTGTCACGATAGTAACCGCTGTTACTGTGTTCAGTGCGGGAGCTGTTGTGGGTGTGGACACTACTATGGTGGA a * W D N M Y R P * Q C Y H W R Q * H K S R P R Q H P H L * * Y H L - b C N G I I C T A L D S A I I G D N D T S H A L D N T H T C D D T T C - c V M G * Y V P P L T V L S L A T M T Q V T P S T T P T P V M I P P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d Q L P I I H V A R S L A I M P S L S V L * A R S L V W V Q S S V V - e S Y H S L I Y R G Q C H * * Q R C H C L D R G R C C G C R H H Y W R - f T I P Y Y T G G K V T S D N A V I V C T V G E V V G V G T I I G G - BspMI PflMI | SacI VspI | | | | GCTGGCACCTCGGCTTCAGGGTACAGATCATATCCAGCCATAGGAGAGAGCTCCATAAATGTCGTCCCAGGGTCGATTAATGCCGTAACTCGATCTCTGG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGACCGTGGAGCCGAAGTCCCATGTCTAGTATAGGTCGGTATCCTCTCTCGAGGTATTTACAGCAGGGTCCCAGCTAATTACGGCATTGAGCTAGAGACC a L A P R L Q G T D H I Q P * E R A P * M S S Q G R L M P * L D L W - b W H L G F R V Q I I S S H R R E L H K C R P R V D * C R N S I S G - c A G T S A S G Y R S Y P A I G E S S I N V V P G S I N A V T R S L G - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d Q Q C R P K L T C I M D L W L L S S W L H R G L T S * H R L E I E P - e S A G R S * P V S * I W G Y S L A G Y I D D W P R N I G Y S S R Q - f A P V E A E P Y L D Y G A M P S L E M F T T G P D I L A T V R D R - ClaI BcgI PvuI BcgI SphI RcaI | | | | | GGAGCATCTTTTTGCGATCGATGTGCTTCTGCCTGGCCTTATCAGACCCTCCCTTCTGGATTTTGCGGGCGAGTTCCTGCATGCGGCTCATGACCTCGCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CCTCGTAGAAAAACGCTAGCTACACGAAGACGGACCGGAATAGTCTGGGAGGGAAGACCTAAAACGCCCGCTCAAGGACGTACGCCGAGTACTGGAGCGA a G A S F C D R C A S A W P Y Q T L P S G F C G R V P A C G S * P R S - b E H L F A I D V L L P G L I R P S L L D F A G E F L H A A H D L A - c S I F L R S M C F C L A L S D P P F W I L R A S S C M R L M T S L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S C R K A I S T S R G P R I L G E R R S K A P S N R C A A * S R A - e P A D K Q S R H A E A Q G * * V R G E P N Q P R T G A H P E H G R - f P L M K K R D I H K Q R A K D S G G K Q I K R A L E Q M R S M V E S - EarI BamHI BamHI BspMI | | | | CATTTGCTTCTCATTCTCCTTGAACTCTTCCGACGAAGGATCCACGGAAGTTTGGATCCGTGAGATAGCACCTGCATGATGTGGCGGGGTGAGGTTTGCG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GTAAACGAAGAGTAAGAGGAACTTGAGAAGGCTGCTTCCTAGGTGCCTTCAAACCTAGGCACTCTATCGTGGACGTACTACACCGCCCCACTCCAAACGC a F A S H S P * T L P T K D P R K F G S V R * H L H D V A G * G L R - b H L L L I L L E L F R R R I H G S L D P * D S T C M M W R G E V C D - c I C F S F S L N S S D E G S T E V W I R E I A P A * C G G V R F A - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d * K S R M R R S S K R R L I W P L K S G H S L V Q M I H R P S T Q - e E N A E * E G Q V R G V F S G R F N P D T L Y C R C S T A P H P K R - f M Q K E N E K F E E S S P D V S T Q I R S I A G A H H P P T L N A - AceIII AhdI BsmBI| EcoRV SacI BsmBI | || | | | ACAGCTCGTCTCTGTGAGGATATCTGTAAGCGGGAGCTCTGGCGACCGAATTGGCGACCAAGGAGCATCGCCTGACGAGACGAACGTGATAGAGCCATTC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TGTCGAGCAGAGACACTCCTATAGACATTCGCCCTCGAGACCGCTGGCTTAACCGCTGGTTCCTCGTAGCGGACTGCTCTGCTTGCACTATCTCGGTAAG a Q L V S V R I S V S G S S G D R I G D Q G A S P D E T N V I E P F - b S S S L * G Y L * A G A L A T E L A T K E H R L T R R T * * S H S - c T A R L C E D I C K R E L W R P N W R P R S I A * R D E R D R A I L - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S L E D R H P Y R Y A P A R A V S N A V L S C R R V L R V H Y L W E - e C S T E T L I D T L P L E P S R I P S W P A D G S S V F T I S G N - f V A R R Q S S I Q L R S S Q R G F Q R G L L M A Q R S S R S L A M - Bce83I Pfl1108I BssSI EcoRI BssSI BssSI | | | | | | TGGAAGCTCTATGAAGATTGGAAAAGTTCCAATTACTCAAGACGGATCTACGATGACCCTCGTGCCGAATTCGGCACGAGGCACGAGGGAGAGGCCCCCC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 ACCTTCGAGATACTTCTAACCTTTTCAAGGTTAATGAGTTCTGCCTAGATGCTACTGGGAGCACGGCTTAAGCCGTGCTCCGTGCTCCCTCTCCGGGGGG a W K L Y E D W K S S N Y S R R I Y D D P R A E F G T R H E G E A P P - b G S S M K I G K V P I T Q D G S T M T L V P N S A R G T R E R P P - c E A L * R L E K F Q L L K T D L R * P S C R I R H E A R G R G P P - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P L E I F I P F T G I V * S P D V I V R T G F E A R P V L S L G G - e Q F S * S S Q F L E L * E L R I * S S G R A S N P V L C S P S A G - f R S A R H L N S F N W N S L V S R R H G E H R I R C S A R P L P G G - XhoI XmnI Bce83I | | | CCTCGAGTTTTTTTTTTTTTTTTTTATGAGAAAAAGTTCAGAGTTCTGTCTGTTGTCTTATGGTATCTTTGAAAAGTCCCTCTCCACCGTCAATCTCAAG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GGAGCTCAAAAAAAAAAAAAAAAAATACTCTTTTTCAAGTCTCAAGACAGACAACAGAATACCATAGAAACTTTTCAGGGAGAGGTGGCAGTTAGAGTTC a S S F F F F F L * E K V Q S S V C C L M V S L K S P S P P S I S S - b P R V F F F F F Y E K K F R V L S V V L W Y L * K V P L H R Q S Q A - c L E F F F F F F M R K S S E F C L L S Y G I F E K S L S T V N L K - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d G R T K K K K K * S F F N L T R D T T K H Y R Q F T G R W R * D * - e G E L K K K K K K H S F T * L E T Q Q R I T D K F L G E G G D I E L - f R S N K K K K K I L F L E S N Q R N D * P I K S F D R E V T L R L - BfiI SalI BspLU11I BspEI | | | | CGACTGGGTTTTTAGCGGCCAAACCCATCATCCATTCATTATTTTTTCGTTTGGGGTCGACGATACATGTCAACCCGCGTCTGGTGATCCGGAAGTCAAG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GCTGACCCAAAAATCGCCGGTTTGGGTAGTAGGTAAGTAATAAAAAAGCAAACCCCAGCTGCTATGTACAGTTGGGCGCAGACCACTAGGCCTTCAGTTC a D W V F S G Q T H H P F I I F S F G V D D T C Q P A S G D P E V K - b T G F L A A K P I I H S L F F R L G S T I H V N P R L V I R K S S - c R L G F * R P N P S S I H Y F F V W G R R Y M S T R V W * S G S Q V - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d A V P N K A A L G M M W E N N K R K P D V I C T L G R R T I R F D L - e S Q T K L P W V W * G N M I K E N P T S S V H * G A D P S G S T L - f R S P K * R G F G D D M * * K K T Q P R R Y M D V R T Q H D P L * - BstEII BstEII BstEII | | | TGAAGAAGTCAAAAGCCAAGTCAAGTCTCTTAGTAACCACCACGGTCACCACCGCCGTAGCTGCGGTCACCACCACCGTAGCTGCGGTCACCGCCACCGT 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 ACTTCTTCAGTTTTCGGTTCAGTTCAGAGAATCATTGGTGGTGCCAGTGGTGGCGGCATCGACGCCAGTGGTGGTGGCATCGACGCCAGTGGCGGTGGCA a * R S Q K P S Q V S * * P P R S P P P * L R S P P P * L R S P P P * - b E E V K S Q V K S L S N H H G H H R R S C G H H H R S C G H R H R - c K K S K A K S S L L V T T T V T T A V A A V T T T V A A V T A T V - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d S S T L L W T L D R L L W W P * W R R L Q P * W W R L Q P * R W R - e H L L * F G L * T E * Y G G R D G G G Y S R D G G G Y S R D G G G - f T F F D F A L D L R K T V V V T V V A T A A T V V V T A A T V A V T - BglI NgoAIV | | AACCACCTCGGCCACCACCGTAGCCGCCACCTCGGCCACCACCGAAGCCGCCGCCGTTACCGCCGGCAGGACGGGCGTTGGCGACGTTGACACGGATGCG 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 TTGGTGGAGCCGGTGGTGGCATCGGCGGTGGAGCCGGTGGTGGCTTCGGCGGCGGCAATGGCGGCCGTCCTGCCCGCAACCGCTGCAACTGTGCCTACGC a P P R P P P * P P P R P P P K P P P L P P A G R A L A T L T R M R - b N H L G H H R S R H L G H H R S R R R Y R R Q D G R W R R * H G C D - c T T S A T T V A A T S A T T E A A A V T A G R T G V G D V D T D A - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d L W R P W W R L R W R P W W R L R R R * R R C S P R Q R R Q C P H - e Y G G R G G G Y G G G R G G G F G G G N G G A P R A N A V N V R I R - f V V E A V V T A A V E A V V S A A A T V A P L V P T P S T S V S A - PshAI BseRI Eco57I EagI | | | | ACGACCGTCAAGCTCCTGCTCGTTCAGGGCATCGACAGCAGCGGTAGCCTGCTCCTCGGTGCTGAAGGTAACGAAACCGAAACCACGGGCACGGCCGGTA 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 TGCTGGCAGTTCGAGGACGAGCAAGTCCCGTAGCTGTCGTCGCCATCGGACGAGGAGCCACGACTTCCATTGCTTTGGCTTTGGTGCCCGTGCCGGCCAT a R P S S S C S F R A S T A A V A C S S V L K V T K P K P R A R P V - b D R Q A P A R S G H R Q Q R * P A P R C * R * R N R N H G H G R Y - c T T V K L L L V Q G I D S S G S L L L G A E G N E T E T T G T A G I - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d S S R * A G A R E P C R C C R Y G A G R H Q L Y R F R F W P C P R Y - e R G D L E Q E N L A D V A A T A Q E E T S F T V F G F G R A R G T - f V V T L S R S T * P M S L L P L R S R P A S P L S V S V V P V A P - BstEII EciI Eco57I | | | TCACGGTCGCGCATGATGATAGAGTCGGTGACCTCGCCGAACTCGCTGAAGGTCTGGCGGAGAGTCTCATCGGTGGTGTTCCAGGACAGGTTTCCAACGT 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 AGTGCCAGCGCGTACTACTATCTCAGCCACTGGAGCGGCTTGAGCGACTTCCAGACCGCCTCTCAGAGTAGCCACCACAAGGTCCTGTCCAAAGGTTGCA a S R S R M M I E S V T S P N S L K V W R R V S S V V F Q D R F P T * - b H G R A * * * S R * P R R T R * R S G G E S H R W C S R T G F Q R - c T V A H D D R V G D L A E L A E G L A E S L I G G V P G Q V S N V - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d * P R A H H Y L R H G R R V R Q L D P P S D * R H H E L V P K W R - e D R D R M I I S D T V E G F E S F T Q R L T E D T T N W S L N G V - f I V T A C S S L T P S R A S S A S P R A S L R M P P T G P C T E L T - ApaLI BssSI | HindIII BsbI Pfl1108I BplI | | | | | | | | AAAGCTTAGACATGATGGCGCGTGTTGTTGTGAATGTTCGAGAGAATGATCGAAGCGGAGTGAAGCGTCGTAGAAAATTCATGGAGGGGGCCTCGTGCAC 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 TTTCGAATCTGTACTACCGCGCACAACAACACTTACAAGCTCTCTTACTAGCTTCGCCTCACTTCGCAGCATCTTTTAAGTACCTCCCCCGGAGCACGTG a S L D M M A R V V V N V R E N D R S G V K R R R K F M E G A S C T - b K A * T * W R V L L * M F E R M I E A E * S V V E N S W R G P R A R - c K L R H D G A C C C E C S R E * S K R S E A S * K I H G G G L V H - 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 d L A * V H H R T N N H I N S L I I S A S H L T T S F E H L P G R A - e Y L K S M I A R T T T F T R S F S R L P T F R R L F N M S P A E H V - f F S L C S P A H Q Q S H E L S H D F R L S A D Y F I * P P P R T C - EcoRI AhdI BcgI AhdI BcgI |NspV BspMI BsgI | | | | | | | | | GGGGGGTTTTGAGCCTTCAATGGTGACGAATGGACTGCTGGTCTGACAACGGTGAATTCGAACATGGAAGGTGCAGGTGCTACGCCAAGACCATTGGTCT 1401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1500 CCCCCCAAAACTCGGAAGTTACCACTGCTTACCTGACGACCAGACTGTTGCCACTTAAGCTTGTACCTTCCACGTCCACGATGCGGTTCTGGTAACCAGA a G G F E P S M V T N G L L V * Q R * I R T W K V Q V L R Q D H W S - b G V L S L Q W * R M D C W S D N G E F E H G R C R C Y A K T I G L - c G G F * A F N G D E W T A G L T T V N S N M E G A G A T P R P L V C - 1401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1500 d R P T K L R * H H R I S Q Q D S L P S N S C P L H L H * A L V M P R - e P P K S G E I T V F P S S T Q C R H I R V H F T C T S R W S W Q D - f P P N Q A K L P S S H V A P R V V T F E F M S P A P A V G L G N T - EcoRV | GTCCGCTGAGAAGGAGCCCGATATCTATGGCGCTAT 1501 ---------+---------+---------+------ 1536 CAGGCGACTCTTCCTCGGGCTATAGATACCGCGATA a V R * E G A R Y L W R Y - b S A E K E P D I Y G A - c P L R R S P I S M A L - 1501 ---------+---------+---------+------ 1536 d D A S F S G S I * P A I - e T R Q S P A R Y R H R * - f Q G S L L L G I D I A S - Enzymes that do cut: AceIII AhdI ApaLI BamHI Bce83I BcgI BfiI BglI BplI Bpu10I BsbI BseRI BsgI BsmBI BspEI BspLU11I BspMI BssHII BssSI BstEII ClaI EagI EarI EciI Eco57I EcoRI EcoRV HindIII NarI NgoAIV NsiI NspV Pfl1108I PflMI PshAI PvuI RcaI SacI SalI SphI VspI XhoI XmnI Enzymes that do not cut: AatII AflII AlwNI ApaI ApaBI AscI AvrII BbsI BclI BglII BpmI Bpu1102I BsaI BsaBI BsaXI BsiWI BsmI BspGI BsrBI BsrDI BsrGI Bst1107I BstXI Bsu36I DraI DraIII DrdI DrdII Eco47III EcoNI FseI FspI HgiEII HpaI KpnI MfeI MluI MscI NcoI NdeI NheI NotI NruI PacI PinAI PmeI PmlI Psp1406I PstI PvuII RsrII SacII SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I XbaI XcmI