(Linear) MAP of: ./Fgr_contig0018.seq check: 1213 from: 1 to: 1122 Fgr_contig0018 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. BssSI AlwNI DraIII | | | GCACGAGGAAGCAGCCCGGCCCGAAAGGGTCGGACAAAGCTGCGGCGCACCCTTCCAGTACCTGATCTTGCAGACTTCCACTGCGTGCTGATTCACTGGT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCTTCGTCGGGCCGGGCTTTCCCAGCCTGTTTCGACGCCGCGTGGGAAGGTCATGGACTAGAACGTCTGAAGGTGACGCACGACTAAGTGACCA a A R G S S P A R K G R T K L R R T L P V P D L A D F H C V L I H W F - b H E E A A R P E R V G Q S C G A P F Q Y L I L Q T S T A C * F T G - c T R K Q P G P K G S D K A A A H P S S T * S C R L P L R A D S L V - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C S S A A R G S L T P C L Q P A G K W Y R I K C V E V A H Q N V P - e R P L L G A R F P R V F S R R V R G T G S R A S K W Q T S I * Q - f V L F C G P G F P D S L A A A C G E L V Q D Q L S G S R A S E S T - AhdI Eco57I| NcoI|| Eco47III SalI BfiI PvuII ||| | | | | TTGGCGACCCATGGTCCCGCAGCGCTTCAGCATAGTGGCTAGTCGACCCCCACGAAACGGCTTCACTGACCGCGTACTGGGGATGCCTGCGTTACGGCAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 AACCGCTGGGTACCAGGGCGTCGCGAAGTCGTATCACCGATCAGCTGGGGGTGCTTTGCCGAAGTGACTGGCGCATGACCCCTACGGACGCAATGCCGTC a G D P W S R S A S A * W L V D P H E T A S L T A Y W G C L R Y G S - b L A T H G P A A L Q H S G * S T P T K R L H * P R T G D A C V T A A - c W R P M V P Q R F S I V A S R P P R N G F T D R V L G M P A L R Q - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d K A V W P G A A S * C L P * D V G V F R S * Q G R V P S A Q T V A - e N P S G H D R L A E A Y H S T S G W S V A E S V A Y Q P H R R * P L - f Q R G M T G C R K L M T A L R G G R F P K V S R T S P I G A N R C - PflMI | CTGGGCTTCGGCCTGGTCTGCCAGCAGTTGGGTTCTGTGGATGGCTGGCCGCTGGCTACGCCTGAAACTGAGCATCGGGAGGCAACCACTCGCTACGGAC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GACCCGAAGCCGGACCAGACGGTCGTCAACCCAAGACACCTACCGACCGGCGACCGATGCGGACTTTGACTCGTAGCCCTCCGTTGGTGAGCGATGCCTG a W A S A W S A S S W V L W M A G R W L R L K L S I G R Q P L A T D - b G L R P G L P A V G F C G W L A A G Y A * N * A S G G N H S L R T - c L G F G L V C Q Q L G S V D G W P L A T P E T E H R E A T T R Y G H - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d A P S R G P R G A T P N Q P H S A A P * A Q F Q A D P P L W E S R V - e Q A E A Q D A L L Q T R H I A P R Q S R R F S L M P L C G S A V S - f S P K P R T Q W C N P E T S P Q G S A V G S V S C R S A V V R * P - Sse8647I BseRI | ApaI EciI XbaI | | | | | ACCGGAATGGTAGAAGCAGCGTGCTAGGTCCTCCTCCTGGGGCCCCCAAGCCACACCTCCCACAGCGGGTTCGGTGCGGCGGAAGGAAGCCCTGGGGAAT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TGGCCTTACCATCTTCGTCGCACGATCCAGGAGGAGGACCCCGGGGGTTCGGTGTGGAGGGTGTCGCCCAAGCCACGCCGCCTTCCTTCGGGACCCCTTA a T G M V E A A C * V L L L G P P S H T S H S G F G A A E G S P G E S - b P E W * K Q R A R S S S W G P Q A T P P T A G S V R R K E A L G N - c R N G R S S V L G P P P G A P K P H L P Q R V R C G G R K P W G I - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G S H Y F C R A L D E E Q P G W A V G G V A P E T R R F S A R P F - e V P I T S A A H * T R R R P G G L W V E W L P N P A A S P L G P S - f C R F P L L L T S P G G G P A G L G C R G C R T R H P P L F G Q P I - BglI SacI | | CTAGAGGGGGAAAGCGGATTGCCGCCTCGGCGTTTCTGGCCCTGCCAGATCCGCTGTGAACGGCGCGAGCTCTGTCTCGCCACCAGTAACTTAAATCTCT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GATCTCCCCCTTTCGCCTAACGGCGGAGCCGCAAAGACCGGGACGGTCTAGGCGACACTTGCCGCGCTCGAGACAGAGCGGTGGTCATTGAATTTAGAGA a R G G K R I A A S A F L A L P D P L * T A R A L S R H Q * L K S L - b L E G E S G L P P R R F W P C Q I R C E R R E L C L A T S N L N L S - c * R G K A D C R L G V S G P A R S A V N G A S S V S P P V T * I S - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R S P S L P N G G R R K Q G Q W I R Q S R R S S Q R A V L L K F R - e D L P P F R I A A E A N R A R G S G S H V A R A R D R W W Y S L D R - f * L P F A S Q R R P T E P G A L D A T F P A L E T E G G T V * I E - Eco47III MscI SexAI NdeI NsiI | | | | | CCGGCGCTTCTAGCGCTGGTGGCCAACCCCGGCACACGATAGTTACCTGGTTGATTCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GGCCGCGAAGATCGCGACCACCGGTTGGGGCCGTGTGCTATCAATGGACCAACTAAGACGGTCATCAGTATACGAACAGAGTTTCTAATTCGGTACGTAC a R R F * R W W P T P A H D S Y L V D S A S S H M L V S K I K P C M - b G A S S A G G Q P R H T I V T W L I L P V V I C L S Q R L S H A C - c P A L L A L V A N P G T R * L P G * F C Q * S Y A C L K D * A M H V - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d E P A E L A P P W G R C V I T V Q N I R G T T M H K D * L N L W A H - e R R K * R Q H G V G A C S L * R T S E A L L * I S T E F I L G H M - f G A S R A S T A L G P V R Y N G P Q N Q W Y D Y A Q R L S * A M C - XbaI | TCTAAGTATAAGCAATTATACAGCGAAACTGCGAATGGCTCATTATATAAGTTATCGTTTATTTGATAGTACCTTACTACTTGGATAACCGTGGTAATTC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AGATTCATATTCGTTAATATGTCGCTTTGACGCTTACCGAGTAATATATTCAATAGCAAATAAACTATCATGGAATGATGAACCTATTGGCACCATTAAG a S K Y K Q L Y S E T A N G S L Y K L S F I * * Y L T T W I T V V I L - b L S I S N Y T A K L R M A H Y I S Y R L F D S T L L L G * P W * F - c * V * A I I Q R N C E W L I I * V I V Y L I V P Y Y L D N R G N S - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R L I L L * V A F S R I A * * I L * R K N S L V K S S P Y G H Y N - e D L Y L C N Y L S V A F P E N Y L N D N I Q Y Y R V V Q I V T T I - f T * T Y A I I C R F Q S H S M I Y T I T * K I T G * * K S L R P L E - BseRI RcaI | TAGAGCTAATACATGCTAAAAATCCCGACTTCGGAAGGGATGTATTTATTAGATTAAAAACCAATGCCCTCCGGGGCTCACTGGTGATTCATGATAACTC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 ATCTCGATTATGTACGATTTTTAGGGCTGAAGCCTTCCCTACATAAATAATCTAATTTTTGGTTACGGGAGGCCCCGAGTGACCACTAAGTACTATTGAG a E L I H A K N P D F G R D V F I R L K T N A L R G S L V I H D N S - b * S * Y M L K I P T S E G M Y L L D * K P M P S G A H W * F M I T P - c R A N T C * K S R L R K G C I Y * I K N Q C P P G L T G D S * * L - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d * L * Y M S F I G V E S P I Y K N S * F G I G E P A * Q H N M I V - e R S S I C A L F G S K P L S T N I L N F V L A R R P E S T I * S L E - f L A L V H * F D R S R F P H I * * I L F W H G G P S V P S E H Y S - NgoAIV SgrAI DrdII MscI | | | CTCGAATCGCATGGCCTTGCGCCGGCGATGGTTCATTCAAATTTCTTCCCTATCAACTTTCGATGTTTGGGTATTGGCCAAACATGGTTGCAACGGGTAA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GAGCTTAGCGTACCGGAACGCGGCCGCTACCAAGTAAGTTTAAAGAAGGGATAGTTGAAAGCTACAAACCCATAACCGGTTTGTACCAACGTTGCCCATT a S N R M A L R R R W F I Q I S S L S T F D V W V L A K H G C N G * - b R I A W P C A G D G S F K F L P Y Q L S M F G Y W P N M V A T G N - c L E S H G L A P A M V H S N F F P I N F R C L G I G Q T W L Q R V T - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d G R I A H G Q A P S P E N L N R G * * S E I N P Y Q G F M T A V P L - e E F R M A K R R R H N M * I E E R D V K S T Q T N A L C P Q L P Y - f R S D C P R A G A I T * E F K K G I L K R H K P I P W V H N C R T - BssHII | CGGAGGGTTAGGGCTCGACCCCGGAGAAGGAGCCTGAGAAACGGCTACTACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACACGGGGA 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 GCCTCCCAATCCCGAGCTGGGGCCTCTTCCTCGGACTCTTTGCCGATGATGTAGGTTCCTTCCGTCGTCCGCGCGTTTAATGGGTTAGGGCTGTGCCCCT a R R V R A R P R R R S L R N G Y Y I Q G R Q Q A R K L P N P D T G R - b G G L G L D P G E G A * E T A T T S K E G S R R A N Y P I P T R G - c E G * G S T P E K E P E K R L L H P R K A A G A Q I T Q S R H G E - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d P P N P S S G P S P A Q S V A V V D L S P L L R A F * G I G V R P - e R L T L A R G R L L L R L F P * * M W P L C C A R L N G L G S V P - f V S P * P E V G S F S G S F R S S C G L F A A P A C I V W D R C P S - XhoI | GGTAGTGACAATAAATACTGATACAGGGCTCTTTTGGGTCTTGTAATTGGAATGAGTAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAC 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CCATCACTGTTATTTATGACTATGTCCCGAGAAAACCCAGAACATTAACCTTACTCATTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTG a * * Q * I L I Q G S F G S C N W N E * K K K K K K Q K K K K K K T - b G S D N K Y * Y R A L L G L V I G M S K K K K K K N K K K K K K K L - c V V T I N T D T G L F W V L * L E * V K K K K K K T K K K K K K N - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d P L S L L Y Q Y L A R K P R T I P I L L F F F F F F L F F F F F F - e L Y H C Y I S I C P E K P D Q L Q F S Y F F F F F F C F F F F F F V - f T T V I F V S V P S K Q T K Y N S H T F F F F F F V F F F F F F F - ApaI KpnI | | TCGAGGGGGGCCCGGTACCCAA 1101 ---------+---------+-- 1122 AGCTCCCCCCGGGCCATGGGTT a R G G P G T Q - b E G G P V P - c S R G A R Y P - 1101 ---------+---------+-- 1122 d S S P P G T G L - e R P P G P V W - f E L P A R Y G - Enzymes that do cut: AhdI AlwNI ApaI BfiI BglI BseRI BssHII BssSI DraIII DrdII EciI Eco47III Eco57I KpnI MscI NcoI NdeI NgoAIV NsiI PflMI PvuII RcaI SacI SalI SexAI SgrAI Sse8647I XbaI XhoI Enzymes that do not cut: AatII AceIII AflII ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BcgI BclI BglII BplI BpmI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI Bst1107I BstEII BstXI Bsu36I ClaI DraI DrdI EagI EarI EcoNI EcoRI EcoRV FseI FspI HgiEII HindIII HpaI MfeI MluI NarI NheI NotI NruI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PstI PvuI RsrII SacII SanDI SapI ScaI SfiI SgfI SmaI SnaBI SpeI SphI SrfI Sse8387I SspI StuI SwaI Tth111I VspI XcmI XmnI