(Linear) MAP of: ./Fgr_contig0019.seq check: 7423 from: 1 to: 1211 Fgr_contig0019 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. MfeI BssSI EarI MscI | MfeI | | | | | GCACGAGGAACAACTCTTTTTACTCTTCTGTTTCTGGCCAATTGACTTCCCAATTGACTTCAAAATAGTACCGTAATACCGTCAAGATGTTTGCCCGATC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCTTGTTGAGAAAAATGAGAAGACAAAGACCGGTTAACTGAAGGGTTAACTGAAGTTTTATCATGGCATTATGGCAGTTCTACAAACGGGCTAG a A R G T T L F T L L F L A N * L P N * L Q N S T V I P S R C L P D L - b H E E Q L F L L F C F W P I D F P I D F K I V P * Y R Q D V C P I - c T R N N S F Y S S V S G Q L T S Q L T S K * Y R N T V K M F A R S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P V V R K V R R N R A L Q S G L Q S * F L V T I G D L H K G S - e V L F L E K * E E T E P W N V E W N V E F Y Y R L V T L I N A R D - f C S S C S K K S K Q K Q G I S K G I S K L I T G Y Y R * S T Q G I - Bpu1102I BseRI BsmI BsrBI| BglI DrdII |BpmI AceIII | || | | | | | TGCATTCCGCGCCGCTCAGCCTTTGAGGTCTGTTCGTCGATATGCCACCGAGGCTGGAGGTGCTGGTGGTTCCAATGCCCTCCTCTACGCTGCTGGAGCT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ACGTAAGGCGCGGCGAGTCGGAAACTCCAGACAAGCAGCTATACGGTGGCTCCGACCTCCACGACCACCAAGGTTACGGGAGGAGATGCGACGACCTCGA a H S A P L S L * G L F V D M P P R L E V L V V P M P S S T L L E L - b C I P R R S A F E V C S S I C H R G W R C W W F Q C P P L R C W S C - c A F R A A Q P L R S V R R Y A T E A G G A G G S N A L L Y A A G A - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d R C E A G S L R Q P R N T S I G G L S S T S T T G I G E E V S S S S - e A N R A A * G K L D T R R Y A V S A P P A P P E L A R R * A A P A - f Q M G R R E A K S T Q E D I H W R P Q L H Q H N W H G G R R Q Q L - BsaXI BplI | BpmI BsrBI | SacI Bpu10I | | | | | GCTGCCCTTGGTGGTGCTGGTTACTGGTACTTTGGCAAGAGCGGAGCTCCCGTTGCTGCCGCTGCTCAGGACGTGAAGCAGGCTGTTGGTGTCGAGCCCA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGACGGGAACCACCACGACCAATGACCATGAAACCGTTCTCGCCTCGAGGGCAACGACGGCGACGAGTCCTGCACTTCGTCCGACAACCACAGCTCGGGT a L P L V V L V T G T L A R A E L P L L P L L R T * S R L L V S S P - b C P W W C W L L V L W Q E R S S R C C R C S G R E A G C W C R A Q - c A A L G G A G Y W Y F G K S G A P V A A A A Q D V K Q A V G V E P K - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S G K T T S T V P V K A L A S S G N S G S S L V H L L S N T D L G - e A A R P P A P * Q Y K P L L P A G T A A A A * S T F C A T P T S G - f Q Q G Q H H Q N S T S Q C S R L E R Q Q R Q E P R S A P Q Q H R A W - PinAI Bce83I SgrAI BclI | BsaI AatII BsbI | | | | | | AGGCGGCTTTCACCGGTGGTGATCAGGGTTGGGTCTCCCTCAAGCTCTCTGACGTCGAGATTGTCAACCACAACACCAAGCGTCTGCGGTTCGAGCTTCC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TCCGCCGAAAGTGGCCACCACTAGTCCCAACCCAGAGGGAGTTCGAGAGACTGCAGCTCTAACAGTTGGTGTTGTGGTTCGCAGACGCCAAGCTCGAAGG a R R L S P V V I R V G S P S S S L T S R L S T T T P S V C G S S F L - b G G F H R W * S G L G L P Q A L * R R D C Q P Q H Q A S A V R A S - c A A F T G G D Q G W V S L K L S D V E I V N H N T K R L R F E L P - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d L R S E G T T I L T P D G E L E R V D L N D V V V G L T Q P E L K - e L A A K V P P S * P Q T E R L S E S T S I T L W L V L R R R N S S G - f P P K * R H H D P N P R G * A R Q R R S Q * G C C W A D A T R A E - Tth111I Eco57I EarI BsgI | BstXI | SapI ApaI Pfl1108I | | | | | | | TGAAGCTGACCAAGTCTCTGGTCTGCACGTTGCCAGTGCTCTTCTCACAAAGTACAAGGGCCCTAATGACGAGAAGGCCACCCTACGACCCTACACCCCT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ACTTCGACTGGTTCAGAGACCAGACGTGCAACGGTCACGAGAAGAGTGTTTCATGTTCCCGGGATTACTGCTCTTCCGGTGGGATGCTGGGATGTGGGGA a K L T K S L V C T L P V L F S Q S T R A L M T R R P P Y D P T P L - b * S * P S L W S A R C Q C S S H K V Q G P * * R E G H P T T L H P Y - c E A D Q V S G L H V A S A L L T K Y K G P N D E K A T L R P Y T P - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R F S V L D R T Q V N G T S K E C L V L A R I V L L G G * S G V G R - e S A S W T E P R C T A L A R R V F Y L P G L S S F A V R R G * V G - f Q L Q G L R Q D A R Q W H E E * L T C P G * H R S P W G V V R C G - BsaI BsgI BspMI Bce83I | | | | ATCAGCGATGAGACCGACAAGGGCTTCCTCGACTTGCTTATCAAGAAATACCCTAACGGCCCCATGAGCACACACCTGCACGACATGGCTCCTGGTCAGC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TAGTCGCTACTCTGGCTGTTCCCGAAGGAGCTGAACGAATAGTTCTTTATGGGATTGCCGGGGTACTCGTGTGTGGACGTGCTGTACCGAGGACCAGTCG a S A M R P T R A S S T C L S R N T L T A P * A H T C T T W L L V S - b Q R * D R Q G L P R L A Y Q E I P * R P H E H T P A R H G S W S A - c I S D E T D K G F L D L L I K K Y P N G P M S T H L H D M A P G Q R - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d D A I L G V L A E E V Q K D L F V R V A G H A C V Q V V H S R T L - e I L S S V S L P K R S K S I L F Y G L P G M L V C R C S M A G P * - f * * R H S R C P S G R S A * * S I G * R G W S C V G A R C P E Q D A - ApaI BseRI PinAI | | | GACTCGACCTCAAGGGCCCCCTGCCCAAGTACGCCTGGGAGGAGAACAAGCACGACCACATCGCCCTCATCGCTGGTGGCACCGGTATTACTCCCATGTA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CTGAGCTGGAGTTCCCGGGGGACGGGTTCATGCGGACCCTCCTCTTGTTCGTGCTGGTGTAGCGGGAGTAGCGACCACCGTGGCCATAATGAGGGTACAT a D S T S R A P C P S T P G R R T S T T T S P S S L V A P V L L P C T - b T R P Q G P P A Q V R L G G E Q A R P H R P H R W W H R Y Y S H V - c L D L K G P L P K Y A W E E N K H D H I A L I A G G T G I T P M Y - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d S E V E L A G Q G L V G P L L V L V V V D G E D S T A G T N S G H - e R S S R L P G R G L Y A Q S S F L C S W M A R M A P P V P I V G M Y - f V R G * P G G A W T R R P P S C A R G C R G * R Q H C R Y * E W T - BseRI AceIII PshAI Bce83I | XmnI | | | | | CCAGCTCGCCCGCGCCATCTTCAACAACCCCAAGGACAAGACCAAGGTCACTCTTGTATTTGGCAACGTCAGCGAGCAAGACATCCTCCTCAAGAAGCAA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GGTCGAGCGGGCGCGGTAGAAGTTGTTGGGGTTCCTGTTCTGGTTCCAGTGAGAACATAAACCGTTGCAGTCGCTCGTTCTGTAGGAGGAGTTCTTCGTT a S S P A P S S T T P R T R P R S L L Y L A T S A S K T S S S R S N - b P A R P R H L Q Q P Q G Q D Q G H S C I W Q R Q R A R H P P Q E A I - c Q L A R A I F N N P K D K T K V T L V F G N V S E Q D I L L K K Q - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d V L E G A G D E V V G L V L G L D S K Y K A V D A L L V D E E L L L - e W S A R A M K L L G L S L V L T V R T N P L T L S C S M R R L F C - f G A R G R W R * C G W P C S W P * E Q I Q C R * R A L C G G * S A - SacI Eco47III XhoI| BseRI Bpu10I | PflMI Bce83I || | | | | | TTCGAGGAGCTCGAGAACACCTACCCTCAGCGCTTCCGAGCCTTCTACGTCCTCGACAACCCTCCCAAGGGCTGGGCTGGTGGCAGTGGCTTCATCTCCA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 AAGCTCCTCGAGCTCTTGTGGATGGGAGTCGCGAAGGCTCGGAAGATGCAGGAGCTGTTGGGAGGGTTCCCGACCCGACCACCGTCACCGAAGTAGAGGT a S R S S R T P T L S A S E P S T S S T T L P R A G L V A V A S S P - b R G A R E H L P S A L P S L L R P R Q P S Q G L G W W Q W L H L Q - c F E E L E N T Y P Q R F R A F Y V L D N P P K G W A G G S G F I S K - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d E L L E L V G V R L A E S G E V D E V V R G L A P S T A T A E D G - e N S S S S F V * G * R K R A K * T R S L G G L P Q A P P L P K M E - f I R P A R S C R G E A S G L R R R G R C G E W P S P Q H C H S * R W - BsaI Sse8647I Bpu10I HindIII RcaI | BsaXI | | | | | | AGGACCTTCTCAAGACTGTTCTTCCTGAGCCCAAGAACGAGAACATCAAGCTTTTCGTCTGCGGTCCTCCCGGTCTCATGAACGCCATCTCCGGGAACAA 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 TCCTGGAAGAGTTCTGACAAGAAGGACTCGGGTTCTTGCTCTTGTAGTTCGAAAAGCAGACGCCAGGAGGGCCAGAGTACTTGCGGTAGAGGCCCTTGTT a R T F S R L F F L S P R T R T S S F S S A V L P V S * T P S P G T R - b G P S Q D C S S * A Q E R E H Q A F R L R S S R S H E R H L R E Q - c D L L K T V L P E P K N E N I K L F V C G P P G L M N A I S G N K - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d L V K E L S N K R L G L V L V D L K E D A T R G T E H V G D G P V - e L S R R L V T R G S G L F S F M L S K T Q P G G P R M F A M E P F L - f P G E * S Q E E Q A W S R S C * A K R R R D E R D * S R W R R S C - DrdII AceIII | Bce83I PinAI SacI SexAI BspLU11I | | | | | | | GGTCAGCCCTAAGAACCAGGGTGAGCTGACCGGTGCTCTCAAGGAGCTCGGCTACAAGGAGGACCAGGTTTACAAGTTCTGAACAAAGACATGTGTGGAT 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CCAGTCGGGATTCTTGGTCCCACTCGACTGGCCACGAGAGTTCCTCGAGCCGATGTTCCTCCTGGTCCAAATGTTCAAGACTTGTTTCTGTACACACCTA a S A L R T R V S * P V L S R S S A T R R T R F T S S E Q R H V W M - b G Q P * E P G * A D R C S Q G A R L Q G G P G L Q V L N K D M C G C - c V S P K N Q G E L T G A L K E L G Y K E D Q V Y K F * T K T C V D - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d L D A R L V L T L Q G T S E L L E A V L L V L N V L E S C L C T H I - e T L G L F W P S S V P A R L S S P * L S S W T * L N Q V F V H T S - f P * G * S G P H A S R H E * P A R S C P P G P K C T R F L S M H P - BsmI NgoAIV | EcoRI SexAI | | | | GTAATGATAGATTTGAATGCCGGCGACGAAGATTACTGTTAGTGTAAGAATTCAGCTTATAGAAGCGTTAGATGACGAATATGCCATCTTGAATTGATAC 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 CATTACTATCTAAACTTACGGCCGCTGCTTCTAATGACAATCACATTCTTAAGTCGAATATCTTCGCAATCTACTGCTTATACGGTAGAACTTAACTATG a * * * I * M P A T K I T V S V R I Q L I E A L D D E Y A I L N * Y - b N D R F E C R R R R L L L V * E F S L * K R * M T N M P S * I D T - c V M I D L N A G D E D Y C * C K N S A Y R S V R * R I C H L E L I P - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d Y H Y I Q I G A V F I V T L T L I * S I S A N S S S Y A M K F Q Y - e T I I S K F A P S S S * Q * H L F E A * L L T L H R I H W R S N I - f H L S L N S H R R R L N S N T Y S N L K Y F R * I V F I G D Q I S V - CAGGTCAATCT 1201 ---------+- 1211 GTCCAGTTAGA a Q V N - b R S I - c G Q S - 1201 ---------+- 1211 d W T L R - e G P * D - f L D I - Enzymes that do cut: AatII AceIII ApaI Bce83I BclI BglI BplI BpmI Bpu10I Bpu1102I BsaI BsaXI BsbI BseRI BsgI BsmI BspLU11I BspMI BsrBI BssSI BstXI DrdII EarI Eco47III Eco57I EcoRI HindIII MfeI MscI NgoAIV Pfl1108I PflMI PinAI PshAI RcaI SacI SapI SexAI SgrAI Sse8647I Tth111I XhoI XmnI Enzymes that do not cut: AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BamHI BbsI BcgI BfiI BglII BsaBI BsiWI BsmBI BspEI BspGI BsrDI BsrGI BssHII Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdI EagI EciI EcoNI EcoRV FseI FspI HgiEII HpaI KpnI MluI NarI NcoI NdeI NheI NotI NruI NsiI NspV PacI PmeI PmlI Psp1406I PstI PvuI PvuII RsrII SacII SalI SanDI ScaI SfiI SgfI SmaI SnaBI SpeI SphI SrfI Sse8387I SspI StuI SwaI VspI XbaI XcmI