(Linear) MAP of: ./Fgr_contig0021.seq check: 571 from: 1 to: 1355 Fgr_contig0021 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. BssSI BcgI PinAI KpnI | | | | GCACGAGGGTCGCTTAACCTTGAACAAAGAAATCCCGCCGAAATGCCTGTTGGAACCGTTCTCGTTACCGGTGGTACCGGATACATTGGCTCTTTCACCT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCCAGCGAATTGGAACTTGTTTCTTTAGGGCGGCTTTACGGACAACCTTGGCAAGAGCAATGGCCACCATGGCCTATGTAACCGAGAAAGTGGA a A R G S L N L E Q R N P A E M P V G T V L V T G G T G Y I G S F T S - b H E G R L T L N K E I P P K C L L E P F S L P V V P D T L A L S P - c T R V A * P * T K K S R R N A C W N R S R Y R W Y R I H W L F H L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P D S L R S C L F G A S I G T P V T R T V P P V P Y M P E K V - e V L T A * G Q V F F D R R F A Q Q F R E R * R H Y R I C Q S K * R - f C S P R K V K F L S I G G F H R N S G N E N G T T G S V N A R E G - Bce83I BseRI AceIII | | | CGCTCACTCTCCTTGAGCACGGTTACGATGTCGTTATTGTCGATTCCCTCTACAACTCCTCAGAGGTCGCCCTCGACCGCATTGAGCTGATCTGCGGTCG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GCGAGTGAGAGGAACTCGTGCCAATGCTACAGCAATAACAGCTAAGGGAGATGTTGAGGAGTCTCCAGCGGGAGCTGGCGTAACTCGACTAGACGCCAGC a L T L L E H G Y D V V I V D S L Y N S S E V A L D R I E L I C G R - b R S L S L S T V T M S L L S I P S T T P Q R S P S T A L S * S A V A - c A H S P * A R L R C R Y C R F P L Q L L R G R P R P H * A D L R S - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d E S V R R S C P * S T T I T S E R * L E E S T A R S R M S S I Q P R - e A * E G Q A R N R H R * Q R N G R C S R L P R G R G C Q A S R R D - f R E S E K L V T V I D N N D I G E V V G * L D G E V A N L Q D A T - Bce83I EcoRV ClaI Tth111I | | | | | CCGCCCTGCCTTTTATAAGCTCGATATCACAGACGAAAAGGCCATCGATGAGGTCTTTGCCAAGCACCCTGCTATTGACAGCGTCATTCACTTTGCTGCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GGCGGGACGGAAAATATTCGAGCTATAGTGTCTGCTTTTCCGGTAGCTACTCCAGAAACGGTTCGTGGGACGATAACTGTCGCAGTAAGTGAAACGACGG a R P A F Y K L D I T D E K A I D E V F A K H P A I D S V I H F A A - b A L P F I S S I S Q T K R P S M R S L P S T L L L T A S F T L L P - c P P C L L * A R Y H R R K G H R * G L C Q A P C Y * Q R H S L C C P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d R G A K * L S S I V S S F A M S S T K A L C G A I S L T M * K A A - e G G Q R K Y A R Y * L R F P W R H P R Q W A G Q * Q C R * E S Q Q - f A A R G K I L E I D C V F L G D I L D K G L V R S N V A D N V K S G - BglI XhoI ScaI BseRI NcoI | | | | | CTCAAGGCTGTCGGCGAGTCTGGCGAAATCCCTCTCGAGTACTACCGCGTCAATGTTGGTGGCAGCATCTCTCTCCTCCGTTCCATGGAGCGCAACAACG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GAGTTCCGACAGCCGCTCAGACCGCTTTAGGGAGAGCTCATGATGGCGCAGTTACAACCACCGTCGTAGAGAGAGGAGGCAAGGTACCTCGCGTTGTTGC a L K A V G E S G E I P L E Y Y R V N V G G S I S L L R S M E R N N V - b S R L S A S L A K S L S S T T A S M L V A A S L S S V P W S A T T - c Q G C R R V W R N P S R V L P R Q C W W Q H L S P P F H G A Q Q R - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R L A T P S D P S I G R S Y * R T L T P P L M E R R R E M S R L L - e G * P Q R R T Q R F G E R T S G R * H Q H C C R E G G N W P A C C R - f E L S D A L R A F D R E L V V A D I N T A A D R E E T G H L A V V - BseRI BseRI | | | TCAACAACATTGTTTTCTCCTCCTCCGCTACCGTCTACGGCGATGCTACCCGATTCCCCAACATGATTCCCATTCCCGAGCACTGCCCTATTGGACCTAC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AGTTGTTGTAACAAAAGAGGAGGAGGCGATGGCAGATGCCGCTACGATGGGCTAAGGGGTTGTACTAAGGGTAAGGGCTCGTGACGGGATAACCTGGATG a N N I V F S S S A T V Y G D A T R F P N M I P I P E H C P I G P T - b S T T L F S P P P L P S T A M L P D S P T * F P F P S T A L L D L P - c Q Q H C F L L L R Y R L R R C Y P I P Q H D S H S R A L P Y W T Y - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d T L L M T K E E E A V T * P S A V R N G L M I G M G S C Q G I P G V - e * C C Q K R R R R * R R R R H * G I G W C S E W E R A S G * Q V * - f D V V N N E G G G S G D V A I S G S E G V H N G N G L V A R N S R - BsbI EagI Tth111I Bpu1102I NgoAIV | | | | | CAACACCTACGGCCGCACCAAGTCCATGATTGAGGACGTTATTACCGACTTTGTCAATGCTCAGCGCAACAACTTGGAAAAGGCCGGCAAGGAGTACAAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GTTGTGGATGCCGGCGTGGTTCAGGTACTAACTCCTGCAATAATGGCTGAAACAGTTACGAGTCGCGTTGTTGAACCTTTTCCGGCCGTTCCTCATGTTC a N T Y G R T K S M I E D V I T D F V N A Q R N N L E K A G K E Y K - b T P T A A P S P * L R T L L P T L S M L S A T T W K R P A R S T S - c Q H L R P H Q V H D * G R Y Y R L C Q C S A Q Q L G K G R Q G V Q A - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L V * P R V L D M I S S T I V S K T L A * R L L K S F A P L S Y L - e W C R R G C W T W S Q P R * * R S Q * H E A C C S P F P R C P T C - f G V G V A A G L G H N L V N N G V K D I S L A V V Q F L G A L L V L - EarI BsrDI SapI XcmI Bsu36I | | | | CAATGGAACGGTGCTCTTCTGCGATACTTTAACCCTTGCGGTGCTCACCCCACTGGTATCATGGGTGAGGACCCTCAGGGTATTCCTTTCAACCTTTTGC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GTTACCTTGCCACGAGAAGACGCTATGAAATTGGGAACGCCACGAGTGGGGTGACCATAGTACCCACTCCTGGGAGTCCCATAAGGAAAGTTGGAAAACG a Q W N G A L L R Y F N P C G A H P T G I M G E D P Q G I P F N L L P - b N G T V L F C D T L T L A V L T P L V S W V R T L R V F L S T F C - c M E R C S S A I L * P L R C S P H W Y H G * G P S G Y S F Q P F A - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d C H F P A R R R Y K L G Q P A * G V P I M P S S G * P I G K L R K - e A I S R H E E A I S * G K R H E G W Q Y * P H P G E P Y E K * G K A - f L P V T S K Q S V K V R A T S V G S T D H T L V R L T N R E V K Q - BcgI EcoNI BseRI BsaXI| NruI BcgI | | || | | CTCTCCTTGGACAGGTTGCCACTGGCGAGCGTGAGAAGCTCCTTGTTTTCGGTGACGACTACTCCTCTCGCGACGGCACTGCCATTCGAGACTACATTCA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GAGAGGAACCTGTCCAACGGTGACCGCTCGCACTCTTCGAGGAACAAAAGCCACTGCTGATGAGGAGAGCGCTGCCGTGACGGTAAGCTCTGATGTAAGT a L L G Q V A T G E R E K L L V F G D D Y S S R D G T A I R D Y I H - b L S L D R L P L A S V R S S L F S V T T T P L A T A L P F E T T F T - c S P W T G C H W R A * E A P C F R * R L L L S R R H C H S R L H S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d G R R P C T A V P S R S F S R T K P S S * E E R S P V A M R S * M * - e E G Q V P Q W Q R A H S A G Q K R H R S S R E R R C Q W E L S C E - f R E K S L N G S A L T L L E K N E T V V V G R A V A S G N S V V N - SalI SacII DrdII EagI | | | | CGTTGTCGACCTTGCCCGCGGTCACTTGATGGCCCTCAACTACCTCCGTGAGAACCAGCCCGGTGTCAAGGCATGGAACCTGGGTTCCGGCCGTGGCAGC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GCAACAGCTGGAACGGGCGCCAGTGAACTACCGGGAGTTGATGGAGGCACTCTTGGTCGGGCCACAGTTCCGTACCTTGGACCCAAGGCCGGCACCGTCG a V V D L A R G H L M A L N Y L R E N Q P G V K A W N L G S G R G S - b L S T L P A V T * W P S T T S V R T S P V S R H G T W V P A V A A - c R C R P C P R S L D G P Q L P P * E P A R C Q G M E P G F R P W Q H - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d T T S R A R P * K I A R L * R R S F W G P T L A H F R P E P R P L - e R Q R G Q G R D S S P G * S G G H S G A R H * P M S G P N R G H C - f V N D V K G A T V Q H G E V V E T L V L G T D L C P V Q T G A T A A - Eco57I NruI Pfl1108I EciI BsmBI BcgI BplI | | | | | | | ACCGTCTTTGAGATTATCAACGCCTTCAGCAAGGTTGTTGGTCGCGATCTTGCCTACGAGGTCCGCCCCCGACGACAAGGAGACGTTCTCGACCTTACTG 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 TGGCAGAAACTCTAATAGTTGCGGAAGTCGTTCCAACAACCAGCGCTAGAACGGATGCTCCAGGCGGGGGCTGCTGTTCCTCTGCAAGAGCTGGAATGAC a T V F E I I N A F S K V V G R D L A Y E V R P R R Q G D V L D L T A - b P S L R L S T P S A R L L V A I L P T R S A P D D K E T F S T L L - c R L * D Y Q R L Q Q G C W S R S C L R G P P P T T R R R S R P Y C - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d V T K S I I L A K L L T T P R S R A * S T R G R R C P S T R S R V - e C R R Q S * * R R * C P Q Q D R D Q R R P G G G V V L L R E R G * Q - f G D K L N D V G E A L N N T A I K G V L D A G S S L S V N E V K S - BcgI SacI BbsI StuI BseRI | | | | | CCAACCCCACCCTCGCCAACAAGGAGCTCAACTGGAAGACCGAGCTTACTATGGAGGAGGCCTGCAACGATCTCTGGCGATGGGTCGAGAACAACCCCAA 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 GGTTGGGGTGGGAGCGGTTGTTCCTCGAGTTGACCTTCTGGCTCGAATGATACCTCCTCCGGACGTTGCTAGAGACCGCTACCCAGCTCTTGTTGGGGTT a N P T L A N K E L N W K T E L T M E E A C N D L W R W V E N N P K - b P T P P S P T R S S T G R P S L L W R R P A T I S G D G S R T T P R - c Q P H P R Q Q G A Q L E D R A Y Y G G G L Q R S L A M G R E Q P Q - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d A L G V R A L L S S L Q F V S S V I S S A Q L S R Q R H T S F L G L - e W G W G R W C P A * S S S R A * * P P P R C R D R A I P R S C G W - f G V G G E G V L L E V P L G L K S H L L G A V I E P S P D L V V G - BspMI BcgI | BstEII HindIII XbaI BbsI AflII PinAI | | | | | | | | GGGTTACCGCCAAGATCCCCCCGCCAAGCTTCTAGAGGCTGTCAAGTCTTCCAAGGCTTAAGTAATAATAAAATTGGCTACCGGTTGCGGGCAGGTGTCT 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 CCCAATGGCGGTTCTAGGGGGGCGGTTCGAAGATCTCCGACAGTTCAGAAGGTTCCGAATTCATTATTATTTTAACCGATGGCCAACGCCCGTCCACAGA a G Y R Q D P P A K L L E A V K S S K A * V I I K L A T G C G Q V S - b V T A K I P P P S F * R L S S L P R L K * * * N W L P V A G R C L - c G L P P R S P R Q A S R G C Q V F Q G L S N N K I G Y R L R A G V S - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d P * R W S G G A L S R S A T L D E L A * T I I F N A V P Q P C T D - e P N G G L D G R W A E L P Q * T K W P K L L L L I P * R N R A P T - f L T V A L I G G G L K * L S D L R G L S L Y Y Y F Q S G T A P L H R - BstEII BcgI | Eco47III | | | CGCAGTGATGTGAAATGAGGGTTACCAAAGAATTTATGTTTTGGATTTTTAGATGAACTATCCGTGGCATTATAGATATAGCGCTTAAAATAAATATAAA 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 GCGTCACTACACTTTACTCCCAATGGTTTCTTAAATACAAAACCTAAAAATCTACTTGATAGGCACCGTAATATCTATATCGCGAATTTTATTTATATTT a R S D V K * G L P K N L C F G F L D E L S V A L * I * R L K * I * K - b A V M * N E G Y Q R I Y V L D F * M N Y P W H Y R Y S A * N K Y K - c Q * C E M R V T K E F M F W I F R * T I R G I I D I A L K I N I K - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d R L S T F H P N G F F K H K P N K S S S D T A N Y I Y R K F Y I Y - e E C H H S I L T V L S N I N Q I K L H V I R P M I S I A S L I F I F - f A T I H F S P * W L I * T K S K * I F * G H C * L Y L A * F L Y L - AAGGCTAGATTTAATCGAAAAAAAAAAAAAAAAAAAAAACTCGGAGGGGGGGGCC 1301 ---------+---------+---------+---------+---------+----- 1355 TTCCGATCTAAATTAGCTTTTTTTTTTTTTTTTTTTTTTGAGCCTCCCCCCCCGG a G * I * S K K K K K K K T R R G G - b K A R F N R K K K K K K K L G G G G - c R L D L I E K K K K K K N S E G G A - 1301 ---------+---------+---------+---------+---------+----- 1355 d F P * I * D F F F F F F F V R L P P G - e L S S K I S F F F F F F F E S P P A - f F A L N L R F F F F F F F S P P P P - Enzymes that do cut: AceIII AflII BbsI Bce83I BcgI BglI BplI Bpu1102I BsaXI BsbI BseRI BsmBI BspMI BsrDI BssSI BstEII Bsu36I ClaI DrdII EagI EarI EciI Eco47III Eco57I EcoNI EcoRV HindIII KpnI NcoI NgoAIV NruI Pfl1108I PinAI SacI SacII SalI SapI ScaI StuI Tth111I XbaI XcmI XhoI Enzymes that do not cut: AatII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BclI BfiI BglII BpmI Bpu10I BsaI BsaBI BsgI BsiWI BsmI BspEI BspGI BspLU11I BsrBI BsrGI BssHII Bst1107I BstXI DraI DraIII DrdI EcoRI FseI FspI HgiEII HpaI MfeI MluI MscI NarI NdeI NheI NotI NsiI NspV PacI PflMI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SanDI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI SwaI VspI XmnI