(Linear) MAP of: ./Fgr_contig0022.seq check: 1991 from: 1 to: 840 Fgr_contig0022 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. BspEI SalI DrdI MluI PstI RsrII | SmaI | MluI| SacII | DrdI | | | | | || | | | CTGGTACGCCTGCAGCGGTTCCGGTCCGGATTCCCGGGTCGACCCACGCGTCCGCGGACGCGTGGGTCTAAATATCTCCAAAGGTCCAACAGACTCATAC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GACCATGCGGACGTCGCCAAGGCCAGGCCTAAGGGCCCAGCTGGGTGCGCAGGCGCCTGCGCACCCAGATTTATAGAGGTTTCCAGGTTGTCTGAGTATG a L V R L Q R F R S G F P G R P T R P R T R G S K Y L Q R S N R L I P - b W Y A C S G S G P D S R V D P R V R G R V G L N I S K G P T D S Y - c G T P A A V P V R I P G S T H A S A D A W V * I S P K V Q Q T H T - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d Q Y A Q L P E P G S E R T S G R T R P R T P R F I E L P G V S E Y - e T R R C R N R D P N G P R G V R G R V R P D L Y R W L D L L S M - f P V G A A T G T R I G P D V W A D A S A H T * I D G F T W C V * V - Bce83I BplI | SacI | Pfl1108I EcoNI Pfl1108I | | | | | CGCCATCATGCTTATCTACAACGACATCCTCAACGGTGACGAGCTCATCTCCGACTCCTACGACCTCAAGGAGGTTGATGGCATCGTCTACGAGGCCGAC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GCGGTAGTACGAATAGATGTTGCTGTAGGAGTTGCCACTGCTCGAGTAGAGGCTGAGGATGCTGGAGTTCCTCCAACTACCGTAGCAGATGCTCCGGCTG a P S C L S T T T S S T V T S S S P T P T T S R R L M A S S T R P T - b R H H A Y L Q R H P Q R * R A H L R L L R P Q G G * W H R L R G R L - c A I M L I Y N D I L N G D E L I S D S Y D L K E V D G I V Y E A D - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d R W * A * R C R C G * R H R A * R R S R R G * P P Q H C R R R P R - e G G D H K D V V V D E V T V L E D G V G V V E L L N I A D D V L G V - f A M M S I * L S M R L P S S S M E S E * S R L S T S P M T * S A S - BcgI BseRI BcgI BseRI HpaI | BcgI EciI BglI Bpu10I | BcgI DrdI | | | | | | | | | | | TGTGCCATGATCGAGGAGGGTGCTGTCGAAGTTAACATCGGTGCCAACGCTTCCGCCGAGGAGGCTGCTGAGGATCTCGACGACGGCGCGGTCAAGGTCA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 ACACGGTACTAGCTCCTCCCACGACAGCTTCAATTGTAGCCACGGTTGCGAAGGCGGCTCCTCCGACGACTCCTAGAGCTGCTGCCGCGCCAGTTCCAGT a V P * S R R V L S K L T S V P T L P P R R L L R I S T T A R S R S - b C H D R G G C C R S * H R C Q R F R R G G C * G S R R R R G Q G Q - c C A M I E E G A V E V N I G A N A S A E E A A E D L D D G A V K V N - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S H W S R P P H Q R L * C R H W R K R R P P Q Q P D R R R R P * P * - e T G H D L L T S D F N V D T G V S G G L L S S L I E V V A R D L D - f Q A M I S S P A T S T L M P A L A E A S S A A S S R S S P A T L T - HindIII EarI BglI | BpmI BsmBI SapI Bce83I Eco57I SfiI | | | | | | | | ACAACATTGTCAACTCCTTCCGTCTCCAGAGCACCACCTTTGACAAGAAGAGCTACCTGGCTTACCTCAAGGGCTACATGAAGGCCATCAAGGCCAAGCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TGTTGTAACAGTTGAGGAAGGCAGAGGTCTCGTGGTGGAAACTGTTCTTCTCGATGGACCGAATGGAGTTCCCGATGTACTTCCGGTAGTTCCGGTTCGA a T T L S T P S V S R A P P L T R R A T W L T S R A T * R P S R P S F - b Q H C Q L L P S P E H H L * Q E E L P G L P Q G L H E G H Q G Q A - c N I V N S F R L Q S T T F D K K S Y L A Y L K G Y M K A I K A K L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d C C Q * S R G D G S C W R Q C S S S G P K G * P S C S P W * P W A - e V V N D V G E T E L A G G K V L L A V Q S V E L A V H L G D L G L - f L L M T L E K R R W L V V K S L F L * R A * R L P * M F A M L A L S - BbsI EciI BcgI| BsaI PinAI BcgI DrdI | || | | | | TCAGGAGAACGGTTCTTCCGCCGAAGACATCAAGGCTTTCGAGACCGGTGCTTCAAAATTCGTCAAGGACACCATCGTCCCCAAGTTCAAGGACTTCGAG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AGTCCTCTTGCCAAGAAGGCGGCTTCTGTAGTTCCGAAAGCTCTGGCCACGAAGTTTTAAGCAGTTCCTGTGGTAGCAGGGGTTCAAGTTCCTGAAGCTC a R R T V L P P K T S R L S R P V L Q N S S R T P S S P S S R T S S - b S G E R F F R R R H Q G F R D R C F K I R Q G H H R P Q V Q G L R V - c Q E N G S S A E D I K A F E T G A S K F V K D T I V P K F K D F E - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d E P S R N K R R L C * P K R S R H K L I R * P C W R G W T * P S R - e K L L V T R G G F V D L S E L G T S * F E D L V G D D G L E L V E L - f * S F P E E A S S M L A K S V P A E F N T L S V M T G L N L S K S - AflII SgrAI BseRI PflMI BsmBI | | | | TTCTACACCGGCGAGTCTATGGACCCCGATGGAATGGTTGTCCTCCTCAACTACCGTGAGGACGGTGTTACCCCTTACACCATTTTCTGGAAGCACGGTC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AAGATGTGGCCGCTCAGATACCTGGGGCTACCTTACCAACAGGAGGAGTTGATGGCACTCCTGCCACAATGGGGAATGTGGTAAAAGACCTTCGTGCCAG a S T P A S L W T P M E W L S S S T T V R T V L P L T P F S G S T V - b L H R R V Y G P R W N G C P P Q L P * G R C Y P L H H F L E A R S - c F Y T G E S M D P D G M V V L L N Y R E D G V T P Y T I F W K H G L - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d T R C R R T * P G R H F P Q G G * S G H P R H * G K C W K R S A R D - e E V G A L R H V G I S H N D E E V V T L V T N G R V G N E P L V T - f N * V P S D I S G S P I T T R R L * R S S P T V G * V M K Q F C P - PshAI DrdII | | TTAAGGAGACGAAGGTCTAAGTTGGCAATAATGCCACGGTGATGTTTTTGGTTCTGTTCCGTCCTGTCTGTAATGACAAACAGGCGAGCAGCGATTTAGA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AATTCCTCTGCTTCCAGATTCAACCGTTATTACGGTGCCACTACAAAAACCAAGACAAGGCAGGACAGACATTACTGTTTGTCCGCTCGTCGCTAAATCT a L R R R R S K L A I M P R * C F W F C S V L S V M T N R R A A I * I - b * G D E G L S W Q * C H G D V F G S V P S C L * * Q T G E Q R F R - c K E T K V * V G N N A T V M F L V L F R P V C N D K Q A S S D L D - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d * P S S P R L Q C Y H W P S T K P E T G D Q R Y H C V P S C R N L - e K L L R L D L N A I I G R H H K Q N Q E T R D T I V F L R A A I * - f R L S V F T * T P L L A V T I N K T R N R G T Q L S L C A L L S K S - XhoI BsmBI | | TTACGAGCCACACGAATCTCGATTTCGACGCTGGTATATCCCTCGAGATGTAGCGTCGAGACGAAATAAAAAAAGAAAGAAGTTACGAGTTCCATCTAAA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AATGCTCGGTGTGCTTAGAGCTAAAGCTGCGACCATATAGGGAGCTCTACATCGCAGCTCTGCTTTATTTTTTTCTTTCTTCAATGCTCAAGGTAGATTT a T S H T N L D F D A G I S L E M * R R D E I K K E R S Y E F H L K - b L R A T R I S I S T L V Y P S R C S V E T K * K K K E V T S S I * K - c Y E P H E S R F R R W Y I P R D V A S R R N K K R K K L R V P S K - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d N R A V R I E I E V S T Y G E L H L T S V F Y F F F S T V L E M * - e I V L W V F R S K S A P I D R S I Y R R S S I F F S L L * S N W R F - f * S G C S D R N R R Q Y I G R S T A D L R F L F L F F N R T G D L - ApaI KpnI | | AAAAAAAAAAAAAAACTCGGAGGGGGGGGCCCNGGTACCC 801 ---------+---------+---------+---------+ 840 TTTTTTTTTTTTTTTGAGCCTCCCCCCCCGGGNCCATGGG a K K K K N S E G G A ? V P - b K K K K T R R G G P ? Y - c K K K K K L G G G G P G T - 801 ---------+---------+---------+---------+ 840 d F F F F F V R L P P G ? Y G - e F F F F F E S P P A ? T G - f F F F F F S P P P P G P V - Enzymes that do cut: AflII ApaI BbsI Bce83I BcgI BglI BplI BpmI Bpu10I BsaI BseRI BsmBI BspEI DrdI DrdII EarI EciI Eco57I EcoNI HindIII HpaI KpnI MluI Pfl1108I PflMI PinAI PshAI PstI RsrII SacI SacII SalI SapI SfiI SgrAI SmaI XhoI Enzymes that do not cut: AatII AceIII AhdI AlwNI ApaBI ApaLI AscI AvrII BamHI BclI BfiI BglII Bpu1102I BsaBI BsaXI BsbI BsgI BsiWI BsmI BspGI BspLU11I BspMI BsrBI BsrDI BsrGI BssHII BssSI Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII EagI Eco47III EcoRI EcoRV FseI FspI HgiEII MfeI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PmeI PmlI Psp1406I PvuI PvuII RcaI SanDI ScaI SexAI SgfI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XmnI