(Linear) MAP of: ./Fgr_contig0024.seq check: 2112 from: 1 to: 1473 Fgr_contig0024 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:51 .. BssSI BssSI BssSI Eco57I AceIII | | | | | GCACGAGGCAACAAGCACGAGGCACGAGATACCCAAAAGCATCTGAACTTCAGCTCAATCACCTCAACTCATCTACAAGATACCCAAACACTTTTACCAA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCGTTGTTCGTGCTCCGTGCTCTATGGGTTTTCGTAGACTTGAAGTCGAGTTAGTGGAGTTGAGTAGATGTTCTATGGGTTTGTGAAAATGGTT a A R G N K H E A R D T Q K H L N F S S I T S T H L Q D T Q T L L P T - b H E A T S T R H E I P K S I * T S A Q S P Q L I Y K I P K H F Y Q - c T R Q Q A R G T R Y P K A S E L Q L N H L N S S T R Y P N T F T N - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C S A V L V L C S I G L L M Q V E A * D G * S M * L I G L C K * W - e R P L L C S A R S V W F C R F K L E I V E V * R C S V W V S K G - f V L C C A R P V L Y G F A D S S * S L * R L E D V L Y G F V K V L - BsaI | CTACACCAAAAACAACAATCATCATGTCTGGTCTCATCAACAAGGTCAAGGAAGCTATCCACTCCGACAAGGACAAGAAGCACGACTCTACCACCCACGG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GATGTGGTTTTTGTTGTTAGTAGTACAGACCAGAGTAGTTGTTCCAGTTCCTTCGATAGGTGAGGCTGTTCCTGTTCTTCGTGCTGAGATGGTGGGTGCC a T P K T T I I M S G L I N K V K E A I H S D K D K K H D S T T H G - b L H Q K Q Q S S C L V S S T R S R K L S T P T R T R S T T L P P T A - c Y T K N N N H H V W S H Q Q G Q G S Y P L R Q G Q E A R L Y H P R - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S C W F C C D D H R T E D V L D L F S D V G V L V L L V V R G G V - e V V G F V V I M M D P R M L L T L S A I W E S L S L F C S E V V W P - f * V L F L L * * T Q D * * C P * P L * G S R C P C S A R S * W G R - EarI BsbI BcgI | EcoNI BcgI | | | | | CACTCACGACACCCACAACACTCACAGCACTCACTCTTCTGGCCTTCCCGAGGGAACTGCTGGTCCCCACAGCAGCCGTGCTGCCAACGCCGCCGACCCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GTGAGTGCTGTGGGTGTTGTGAGTGTCGTGAGTGAGAAGACCGGAAGGGCTCCCTTGACGACCAGGGGTGTCGTCGGCACGACGGTTGCGGCGGCTGGGG a T H D T H N T H S T H S S G L P E G T A G P H S S R A A N A A D P - b L T T P T T L T A L T L L A F P R E L L V P T A A V L P T P P T P - c H S R H P Q H S Q H S L F W P S R G N C W S P Q Q P C C Q R R R P P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d A S V V G V V S V A S V R R A K G L S S S T G V A A T S G V G G V G - e V * S V W L V * L V * E E P R G S P V A P G W L L R A A L A A S G - f C E R C G C C E C C E S K Q G E R P F Q Q D G C C G H Q W R R R G - BpmI HgiEII | SalI BstXI | | DrdI | AceIII MscI XcmI | | MscI | | | | | | | | CGAGTCGACTCCGACTTGGATAGCTCTCGACGCACTGGAGCTGGCCACACCACTGGTGGTCTAGGCTCTACCACCGGCACTGCTGGCCACACCACCGGCC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GCTCAGCTGAGGCTGAACCTATCGAGAGCTGCGTGACCTCGACCGGTGTGGTGACCACCAGATCCGAGATGGTGGCCGTGACGACCGGTGTGGTGGCCGG a R V D S D L D S S R R T G A G H T T G G L G S T T G T A G H T T G H - b E S T P T W I A L D A L E L A T P L V V * A L P P A L L A T P P A - c S R L R L G * L S T H W S W P H H W W S R L Y H R H C W P H H R P - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S D V G V Q I A R S A S S S A V G S T T * A R G G A S S A V G G A - e R T S E S K S L E R R V P A P W V V P P R P E V V P V A P W V V P - f G L R S R S P Y S E V C Q L Q G C W Q H D L S * W R C Q Q G C W R G - BstXI EciI BseRI BbsI | | | | | ACACTACCGGCGGAATTGGATCTCACTCTGAGAACATGCCCGGCCACTCTACAGGACTTGGCTCTACCGGCCACTCCTCTGGTCTTCCCGAGGGCAGCGT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TGTGATGGCCGCCTTAACCTAGAGTGAGACTCTTGTACGGGCCGGTGAGATGTCCTGAACCGAGATGGCCGGTGAGGAGACCAGAAGGGCTCCCGTCGCA a T T G G I G S H S E N M P G H S T G L G S T G H S S G L P E G S V - b T L P A E L D L T L R T C P A T L Q D L A L P A T P L V F P R A A S - c H Y R R N W I S L * E H A R P L Y R T W L Y R P L L W S S R G Q R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d V S G A S N S R V R L V H G A V R C S K A R G A V G R T K G L A A - e W V V P P I P D * E S F M G P W E V P S P E V P W E E P R G S P L T - f C * R R F Q I E S Q S C A R G S * L V Q S * R G S R Q D E R P C R - SalI DrdI | AceIII AceIII MscI SgrAI EciI | | | | | | | CGGTCCCCACAGCAGCCGTGCTGCCAACGCTGCTGACCCCCGTGTCGACTCTGACTTGGACAGCTCCCGTCACACCGGAGCTGGCCACACCACCGGCGGA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCCAGGGGTGTCGTCGGCACGACGGTTGCGACGACTGGGGGCACAGCTGAGACTGAACCTGTCGAGGGCAGTGTGGCCTCGACCGGTGTGGTGGCCGCCT a G P H S S R A A N A A D P R V D S D L D S S R H T G A G H T T G G - b V P T A A V L P T L L T P V S T L T W T A P V T P E L A T P P A E - c R S P Q Q P C C Q R C * P P C R L * L G Q L P S H R S W P H H R R N - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d D T G V A A T S G V S S V G T D V R V Q V A G T V G S S A V G G A S - e P G W L L R A A L A A S G R T S E S K S L E R * V P A P W V V P P - f R D G C C G H Q W R Q Q G G H R S Q S P C S G D C R L Q G C W R R - ATTGGATCTCACTCTGAGAACATGCCCGGACGCACCTCTGGCATGACTGGCACCGGCATGACCGGAACTGGCCGCCACTCCGAGAACATGCCCGGTCACT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TAACCTAGAGTGAGACTCTTGTACGGGCCTGCGTGGAGACCGTACTGACCGTGGCCGTACTGGCCTTGACCGGCGGTGAGGCTCTTGTACGGGCCAGTGA a I G S H S E N M P G R T S G M T G T G M T G T G R H S E N M P G H S - b L D L T L R T C P D A P L A * L A P A * P E L A A T P R T C P V T - c W I S L * E H A R T H L W H D W H R H D R N W P P L R E H A R S L - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d N S R V R L V H G S A G R A H S A G A H G S S A A V G L V H G T V - e I P D * E S F M G P R V E P M V P V P M V P V P R W E S F M G P * - f F Q I E S Q S C A R V C R Q C S Q C R C S R F Q G G S R S C A R D S - SalI BspGI BseRI BstXI EcoNI DrdI | | | | | | | CCACTGGACTTGGCTCTACCGGCCACTCCTCTGGCCTGCCCGAGGGCAGTGTCGGCCCCCACAGCAGCCGTGCTGCTAACGCTGCCGACCCCCGTGTCGA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GGTGACCTGAACCGAGATGGCCGGTGAGGAGACCGGACGGGCTCCCGTCACAGCCGGGGGTGTCGTCGGCACGACGATTGCGACGGCTGGGGGCACAGCT a T G L G S T G H S S G L P E G S V G P H S S R A A N A A D P R V D - b P L D L A L P A T P L A C P R A V S A P T A A V L L T L P T P V S T - c H W T W L Y R P L L W P A R G Q C R P P Q Q P C C * R C R P P C R - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d G S S K A R G A V G R A Q G L A T D A G V A A T S S V S G V G T D - e E V P S P E V P W E E P R G S P L T P G W L L R A A L A A S G R T S - f W Q V Q S * R G S R Q G A R P C H R G G C C G H Q * R Q R G G H R - XbaI AceIII| PinAI BsrBI|| Pfl1108I HgiEII| ||| | || CTCTGACCTTGACAGCTCTCGCCGCTCTAGAGGTCTTGGTGGTAACACCTACGACCAGACCACCACCGGTACTTCTGGCTTTTCCAGCCACGGTGCCGGT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GAGACTGGAACTGTCGAGAGCGGCGAGATCTCCAGAACCACCATTGTGGATGCTGGTCTGGTGGTGGCCATGAAGACCGAAAAGGTCGGTGCCACGGCCA a S D L D S S R R S R G L G G N T Y D Q T T T G T S G F S S H G A G - b L T L T A L A A L E V L V V T P T T R P P P V L L A F P A T V P V - c L * P * Q L S P L * R S W W * H L R P D H H R Y F W L F Q P R C R C - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d V R V K V A R A A R S T K T T V G V V L G G G T S R A K G A V T G T - e E S R S L E R R E L P R P P L V * S W V V V P V E P K E L W P A P - f S Q G Q C S E G S * L D Q H Y C R R G S W W R Y K Q S K W G R H R - PinAI BstXI AceIII| DrdII BsbI | || | | GCTCACGGTCCTACCGGCACCCACACTGGCACCCACAGCTCTGGCATGACCGGTGCTCACTCTGGTTCTCACATGGCTGGCAACACCGCCTATGACAGCA 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 CGAGTGCCAGGATGGCCGTGGGTGTGACCGTGGGTGTCGAGACCGTACTGGCCACGAGTGAGACCAAGAGTGTACCGACCGTTGTGGCGGATACTGTCGT a A H G P T G T H T G T H S S G M T G A H S G S H M A G N T A Y D S T - b L T V L P A P T L A P T A L A * P V L T L V L T W L A T P P M T A - c S R S Y R H P H W H P Q L W H D R C S L W F S H G W Q H R L * Q H - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d S V T R G A G V S A G V A R A H G T S V R T R V H S A V G G I V A - e A * P G V P V W V P V W L E P M V P A * E P E * M A P L V A * S L - f H E R D * R C G C Q C G C S Q C S R H E S Q N E C P Q C C R R H C C - SalI BspMI AhdI DrdI | BcgI | | | | | CCAACCCCGGACCTGCTCCCAAGACTGCTGGTCCCCACAAGTCTGACATGCTCAACAAGGCCGACCCCCGCGTCGACTCCAACCTTGATGGCAGCAAGAC 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 GGTTGGGGCCTGGACGAGGGTTCTGACGACCAGGGGTGTTCAGACTGTACGAGTTGTTCCGGCTGGGGGCGCAGCTGAGGTTGGAACTACCGTCGTTCTG a N P G P A P K T A G P H K S D M L N K A D P R V D S N L D G S K T - b P T P D L L P R L L V P T S L T C S T R P T P A S T P T L M A A R L - c Q P R T C S Q D C W S P Q V * H A Q Q G R P P R R L Q P * W Q Q D - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d G V G S R S G L S S T G V L R V H E V L G V G A D V G V K I A A L - e V L G P G A G L V A P G W L D S M S L L A S G R T S E L R S P L L V - f W G R V Q E W S Q Q D G C T Q C A * C P R G G R R S W G Q H C C S - BbsI BcgI | AatII | | | TCTCGGAAAGGAGAAGACCTTTGAGACTTCGTAAGTCTCCCTCGACAACCTCGGACGTCAACTGTTTCTCACCATTGTCACTTTTACAGCGATCCCAACT 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 AGAGCCTTTCCTCTTCTGGAAACTCTGAAGCATTCAGAGGGAGCTGTTGGAGCCTGCAGTTGACAAAGAGTGGTAACAGTGAAAATGTCGCTAGGGTTGA a L G K E K T F E T S * V S L D N L G R Q L F L T I V T F T A I P T - b S E R R R P L R L R K S P S T T S D V N C F S P L S L L Q R S Q L - c S R K G E D L * D F V S L P R Q P R T S T V S H H C H F Y S D P N F - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d S E S L L L G K L S R L D G E V V E S T L Q K E G N D S K C R D W S - e R P F S F V K S V E Y T E R S L R P R * S N R V M T V K V A I G V - f E R F P S S R Q S K T L R G R C G R V D V T E * W Q * K * L S G L - EagI PshAI NgoAIV | Bce83I NcoI | | | | | | TTGCCGGCCGTGACCCTACCGATGCTACTCAAGTCCCCCCTTCCATCATGCAGAAGCATGTCCCTACTGAGATCGCTCACGACAACCCTGAGTCCGACCA 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 AACGGCCGGCACTGGGATGGCTACGATGAGTTCAGGGGGGAAGGTAGTACGTCTTCGTACAGGGATGACTCTAGCGAGTGCTGTTGGGACTCAGGCTGGT a L P A V T L P M L L K S P L P S C R S M S L L R S L T T T L S P T M - b C R P * P Y R C Y S S P P F H H A E A C P Y * D R S R Q P * V R P - c A G R D P T D A T Q V P P S I M Q K H V P T E I A H D N P E S D H - 1201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1300 d Q R G H G * R H * E L G G K W * A S A H G * Q S R E R C G Q T R G - e K G A T V R G I S S L D G R G D H L L M D R S L D S V V V R L G V - f K A P R S G V S A V * T G G E M M C F C T G V S I A * S L G S D S W - SalI VspI | | TGGTCGTCGACACAGCAGCACCACCAAGGAGCACCACCGTGGCCTGTAAATGGAGGGAAATGAGATTAATGACTGTTAATGGATATGTATAGCAACATTT 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 ACCAGCAGCTGTGTCGTCGTGGTGGTTCCTCGTGGTGGCACCGGACATTTACCTCCCTTTACTCTAATTACTGACAATTACCTATACATATCGTTGTAAA a V V D T A A P P R S T T V A C K W R E M R L M T V N G Y V * Q H F - b W S S T Q Q H H Q G A P P W P V N G G K * D * * L L M D M Y S N I S - c G R R H S S T T K E H H R G L * M E G N E I N D C * W I C I A T F - 1301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1400 d H D D V C C C W W P A G G H G T F P P F H S * H S N I S I Y L L M - e M T T S V A A G G L L V V T A Q L H L S I L N I V T L P Y T Y C C K - f P R R C L L V V L S C W R P R Y I S P F S I L S Q * H I H I A V N - VspI SspI | DraI XhoI ApaI | | | | | CTTTAATGAATATTAATGAAGTATTTTCTATTTAAAAAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCC 1401 ---------+---------+---------+---------+---------+---------+---------+--- 1473 GAAATTACTTATAATTACTTCATAAAAGATAAATTTTTTTTTTTTTTTTTTTTTTTTGAGCTCCCCCCCGGGG a F N E Y * * S I F Y L K K K K K K K N S R G G P - b L M N I N E V F S I * K K K K K K K T R G G A - c L * * I L M K Y F L F K K K K K K K K L E G G P - 1401 ---------+---------+---------+---------+---------+---------+---------+--- 1473 d E K I F I L S T N E I * F F F F F F F V R P P A G - e K L S Y * H L I K * K F F F F F F F F E L P P G - f R * H I N I F Y K R N L F F F F F F F S S P P G - Enzymes that do cut: AatII AceIII AhdI ApaI BbsI Bce83I BcgI BpmI BsaI BsbI BseRI BspGI BspMI BsrBI BssSI BstXI DraI DrdI DrdII EagI EarI EciI Eco57I EcoNI HgiEII MscI NcoI NgoAIV Pfl1108I PinAI PshAI SalI SgrAI SspI VspI XbaI XcmI XhoI Enzymes that do not cut: AflII AlwNI ApaBI ApaLI AscI AvrII BamHI BclI BfiI BglI BglII BplI Bpu10I Bpu1102I BsaBI BsaXI BsgI BsiWI BsmI BsmBI BspEI BspLU11I BsrDI BsrGI BssHII Bst1107I BstEII Bsu36I ClaI DraIII Eco47III EcoRI EcoRV FseI FspI HindIII HpaI KpnI MfeI MluI NarI NdeI NheI NotI NruI NsiI NspV PacI PflMI PmeI PmlI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SanDI SapI ScaI SexAI SfiI SgfI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I StuI SwaI Tth111I XmnI