(Linear) MAP of: ./Fgr-C_02_A03_T3.seq check: 5208 from: 1 to: 921 Fgr-C_02_A03_T3 921 16 553 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * May 13, 2001 13:20 .. XbaI BsrBI | BpmI | | EagI | | | EcoRI SacI SacII NotI | | | SpeI BamHI SmaI PstI | BssSI EarI Bce83I | | | | | | | | | | | | | | AAAAGCTGGAGCTCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTCTCTTCAATATACTTAGTACCT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 TTTTCGACCTCGAGTGGCGCCACCGCCGGCGAGATCTTGATCACCTAGGGGGCCCGACGTCCTTAAGCCGTGCTCCGAGAGAAGTTATATGAATCATGGA a K S W S S P R W R P L * N * W I P R A A G I R H E A L F N I L S T Y - b K A G A H R G G G R S R T S G S P G L Q E F G T R L S S I Y L V P - c K L E L T A V A A A L E L V D P P G C R N S A R G S L Q Y T * Y L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d F A P A * R P P P R E L V L P D G P S C S N P V L S E E I Y K T G - e L Q L E G R H R G S * F * H I G R A A P I R C S A R K L I S L V - f F S S S V A T A A A R S S T S G G P Q L F E A R P E R * Y V * Y R - BsrDI BcgI| Bce83I Bce83I DrdII| BsmI BsrBI | | || | | ATAATAACTCAAGAATCTCAAGTCATCATGGGTGCTAAATCGGGCACCGCCCTCAAGTTCCTGCAATGGTTCATTCGAGGCATTCAATTCGCTTGCGCCG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TATTATTGAGTTCTTAGAGTTCAGTAGTACCCACGATTTAGCCCGTGGCGGGAGTTCAAGGACGTTACCAAGTAAGCTCCGTAAGTTAAGCGAACGCGGC a N N S R I S S H H G C * I G H R P Q V P A M V H S R H S I R L R R - b I I T Q E S Q V I M G A K S G T A L K F L Q W F I R G I Q F A C A A - c * * L K N L K S S W V L N R A P P S S S C N G S F E A F N S L A P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d I I V * S D * T M M P A L D P V A R L N R C H N M R P M * N A Q A - e * L L E L I E L * * P H * I P C R G * T G A I T * E L C E I R K R R - f Y Y S L F R L D D H T S F R A G G E L E Q L P E N S A N L E S A G - BcgI | CTCTCATCCTTGCCATCTACTCCTACTTCCTAGCAACTCTCCATAACCACAACCTCTCAATCAGCAACAAAATCCGTGCTGTGGAGGGCATTTCTGGAAT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GAGAGTAGGAACGGTAGATGAGGATGAAGGATCGTTGAGAGGTATTGGTGTTGGAGAGTTAGTCGTTGTTTTAGGCACGACACCTCCCGTAAAGACCTTA a S H P C H L L L L P S N S P * P Q P L N Q Q Q N P C C G G H F W N - b L I L A I Y S Y F L A T L H N H N L S I S N K I R A V E G I S G I - c L S S L P S T P T S * Q L S I T T T S Q S A T K S V L W R A F L E S - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d A R M R A M * E * K R A V R W L W L R E I L L L I R A T S P M E P I - e E * G Q W R S R S G L L E G Y G C G R L * C C F G H Q P P C K Q F - f S E D K G D V G V E * C S E M V V V E * D A V F D T S H L A N R S - EagI BseRI BglI| BseRI | NgoAIV|| MscI BstXI EcoRV | | ||| | | | CGCTGTTCTCTACACTGCCGCTGCTCTGCTCCTCCTCTGCTGCCTTGCCGGCCGCACCCTCTCATCTTTACTGGCCATTATGTTGGATATCGCCTTTATC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GCGACAAGAGATGTGACGGCGACGAGACGAGGAGGAGACGACGGAACGGCCGGCGTGGGAGAGTAGAAATGACCGGTAATACAACCTATAGCGGAAATAG a R C S L H C R C S A P P L L P C R P H P L I F T G H Y V G Y R L Y R - b A V L Y T A A A L L L L C C L A G R T L S S L L A I M L D I A F I - c L F S T L P L L C S S S A A L P A A P S H L Y W P L C W I S P L S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d A T R * V A A A R S R R Q Q R A P R V R E D K S A M I N S I A K I - e R Q E R C Q R Q E A G G R S G Q R G C G R M K V P W * T P Y R R * - f D S N E V S G S S Q E E E A A K G A A G E * R * Q G N H Q I D G K D - BsgI NheI PvuII EcoRV | | | | GGCGCTTTCATCTACGTTGCTGTCGCCAACAAGGGCGGTGCTAGCAGCTGCACTGGATATCTCGACACTCCCTTTGGACGTGGAAAGGCTGGTAATACCG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CCGCGAAAGTAGATGCAACGACAGCGGTTGTTCCCGCCACGATCGTCGACGTGACCTATAGAGCTGTGAGGGAAACCTGCACCTTTCCGACCATTATGGC a R F H L R C C R Q Q G R C * Q L H W I S R H S L W T W K G W * Y R - b G A F I Y V A V A N K G G A S S C T G Y L D T P F G R G K A G N T A - c A L S S T L L S P T R A V L A A A L D I S T L P L D V E R L V I P - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d P A K M * T A T A L L P P A L L Q V P Y R S V G K P R P F A P L V - e R R K * R R Q Q R W C P R H * C S C Q I D R C E R Q V H F P Q Y Y R - f A S E D V N S D G V L A T S A A A S S I E V S G K S T S L S T I G - BfiI BpmI NarI | | | CCGAGGGAAGCGACGGTTTCACTGCTCTGCCCAGTTACCGTACCGCCTGCAAGCTCCAGTCTGCTTGTCTAGCTGTCTCCATTGGCGCCATTATCTCTTT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GGCTCCCTTCGCTGCCAAAGTGACGAGACGGGTCAATGGCATGGCGGACGTTCGAGGTCAGACGAACAGATCGACAGAGGTAACCGCGGTAATAGAGAAA a R G K R R F H C S A Q L P Y R L Q A P V C L S S C L H W R H Y L F - b E G S D G F T A L P S Y R T A C K L Q S A C L A V S I G A I I S F - c P R E A T V S L L C P V T V P P A S S S L L V * L S P L A P L S L S - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d A S P L S P K V A R G L * R V A Q L S W D A Q R A T E M P A M I E K - e R P F R R N * Q E A W N G Y R R C A G T Q K D L Q R W Q R W * R K - f G L S A V T E S S Q G T V T G G A L E L R S T * S D G N A G N D R - ApaI ApaI | | CATCTGGTCAATCTTGTCAAATTTCCCTTGCCCCCCACCTTCCCAAGAGAAACCCTTTGGTCCTGGGCCCCCCTAAGAACTACCCCTTGGATACGGGGCC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GTAGACCAGTTAGAACAGTTTAAAGGGAACGGGGGGTGGAAGGGTTCTCTTTGGGAAACCAGGACCCGGGGGGATTCTTGATGGGGAACCTATGCCCCGG a H L V N L V K F P L P P T F P R E T L W S W A P L R T T P W I R G P - b I W S I L S N F P C P P P S Q E K P F G P G P P * E L P L G Y G A - c S G Q S C Q I S L A P H L P K R N P L V L G P P K N Y P L D T G P - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d M Q D I K D F K G Q G G G E W S F G K P G P G G * S S G R P Y P A - e * R T L R T L N G K G G V K G L S V R Q D Q A G R L V V G Q I R P - f E D P * D Q * I E R A G W R G L L F G K T R P G G L F * G K S V P G - CAGGAAGGTTTTTTTAAGCGAATTTTTCCCCCCCCCAAAAACACTGGTTTGGGAAAAAGAAATGTTGTTCCCGAGGTTGTTCCCCCTGACCCGTTGGAAC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GTCCTTCCAAAAAAATTCGCTTAAAAAGGGGGGGGGTTTTTGTGACCAAACCCTTTTTCTTTACAACAAGGGCTCCAACAAGGGGGACTGGGCAACCTTG a G R F F * A N F S P P Q K H W F G K K K C C S R G C S P * P V G T - b Q E G F F K R I F P P P K N T G L G K R N V V P E V V P P D P L E H - c R K V F L S E F F P P P K T L V W E K E M L F P R L F P L T R W N - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d W S P K K L R I K G G G L F V P K P F L F T T G S T T G G S G N S - e G P L N K * A F K E G G W F C Q N P F F F H Q E R P Q E G Q G T P V - f L F T K K L S N K G G G F V S T Q S F S I N N G L N N G R V R Q F - BbsI BssHII DraI | | | ATACCCCCGGAAGACTGTTGCCCCGCGCGCCTGGTGTGAACACATTTTCTCGGAGAAACGCCGCCCCTCCACAAATTTAAAATAAACCCCCTTGTGTTAA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TATGGGGGCCTTCTGACAACGGGGCGCGCGGACCACACTTGTGTAAAAGAGCCTCTTTGCGGCGGGGAGGTGTTTAAATTTTATTTGGGGGAACACAATT a Y P R K T V A P R A W C E H I F S E K R R P S T N L K * T P L C * - b T P G R L L P R A P G V N T F S R R N A A P P Q I * N K P P C V K - c I P P E D C C P A R L V * T H F L G E T P P L H K F K I N P L V L K - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d C V G P L S N G R A G P T F V N E R L F A A G G C I * F L G G Q T L - e Y G R F V T A G R A Q H S C M K E S F R R G E V F K F Y V G K H * - f M G G S S Q Q G A R R T H V C K R P S V G G R W L N L I F G R T N - AGTAGAAAACAAAAAAAAAAC 901 ---------+---------+- 921 TCATCTTTTGTTTTTTTTTTG a S R K Q K K N - b V E N K K K - c * K T K K K - 901 ---------+---------+- 921 d T S F L F F V - e L L F C F F F - f F Y F V F F F - Enzymes that do cut: ApaI BamHI BbsI Bce83I BcgI BfiI BglI BpmI BseRI BsgI BsmI BsrBI BsrDI BssHII BssSI BstXI DraI DrdII EagI EarI EcoRI EcoRV MscI NarI NgoAIV NheI NotI PstI PvuII SacI SacII SmaI SpeI XbaI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BclI BglII BplI Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BsiWI BsmBI BspEI BspGI BspLU11I BspMI BsrGI Bst1107I BstEII Bsu36I ClaI DraIII DrdI EciI Eco47III Eco57I EcoNI FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI NcoI NdeI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XcmI XhoI XmnI