(Linear) MAP of: ./Fgr-C_02_A04_T3.seq check: 4225 from: 1 to: 974 Fgr-C_02_A04_T3 974 2 566 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * May 13, 2001 13:20 .. XbaI BsrBI | BpmI | | EagI | | | EcoRI SacI SacII NotI | | | SpeI BamHI SmaI PstI | BssSI | | | | | | | | | | | | AAAAGCTGGAGCTCCCCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGTTCAGCCTTCCACCCCCACAACAA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 TTTTCGACCTCGAGGGGCGCCACCGCCGGCGAGATCTTGATCACCTAGGGGGCCCGACGTCCTTAAGCCGTGCTCCAAGTCGGAAGGTGGGGGTGTTGTT a K S W S S P R W R P L * N * W I P R A A G I R H E V Q P S T P T T T - b K A G A P R G G G R S R T S G S P G L Q E F G T R F S L P P P Q Q - c K L E L P A V A A A L E L V D P P G C R N S A R G S A F H P H N N - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d L Q L E G R H R G S * F * H I G R A A P I R C S T * G E V G V V - e F S S S G A T A A A R S S T S G G P Q L F E A R P E A K W G W L L - f F A P A G R P P P R E L V L P D G P S C S N P V L N L R G G G C C - BcgI | CAACCATCATCAACAACTTCATCCACATCTTCACAAGAATCATCAACAATGGCTCGCACTAAGCAGACCGCCCGAAAGTCCACTGGTGGCAAGGCCCCTC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GTTGGTAGTAGTTGTTGAAGTAGGTGTAGAAGTGTTCTTAGTAGTTGTTACCGAGCGTGATTCGTCTGGCGGGCTTTCAGGTGACCACCGTTCCGGGGAG a T I I N N F I H I F T R I I N N G S H * A D R P K V H W W Q G P S - b Q P S S T T S S T S S Q E S S T M A R T K Q T A R K S T G G K A P R - c N H H Q Q L H P H L H K N H Q Q W L A L S R P P E S P L V A R P L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d V V M M L L K M W M K V L I M L L P E C * A S R G F T W Q H C P G E - e L W * * C S * G C R * L F * * C H S A S L L G G S L G S T A L G R - f C G D D V V E D V D E C S D D V I A R V L C V A R F D V P P L A G - AceIII BcgI EciI KpnI | | | | GCAAGCAGCTCGCTTCCAAGGCTGCCCGCAAGTCCGCCCCCTCTACCGGAGGTGTCAAGAAGCCTCACCGCTACAAGCCCGGTACCGTCGCTCTCCGTGA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGTTCGTCGAGCGAAGGTTCCGACGGGCGTTCAGGCGGGGGAGATGGCCTCCACAGTTCTTCGGAGTGGCGATGTTCGGGCCATGGCAGCGAGAGGCACT a Q A A R F Q G C P Q V R P L Y R R C Q E A S P L Q A R Y R R S P * - b K Q L A S K A A R K S A P S T G G V K K P H R Y K P G T V A L R E - c A S S S L P R L P A S P P P L P E V S R S L T A T S P V P S L S V R - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d C A A R K W P Q G C T R G R * R L H * S A E G S C A R Y R R E G H - e A L L E S G L S G A L G G G R G S T D L L R V A V L G T G D S E T - f R L C S A E L A A R L D A G E V P P T L F G * R * L G P V T A R R S - BsmBI Bpu10I AhdI | | | GATCCGTCGCTACCAGAAGTCCACTGAGCTTCTCATCCGAAAGCTCCCCTTCCAGCGTCTCGTCCGTGAGATTGCTCAGGACTTCAAGTCTGATCTCCGA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CTAGGCAGCGATGGTCTTCAGGTGACTCGAAGAGTAGGCTTTCGAGGGGAAGGTCGCAGAGCAGGCACTCTAACGAGTCCTGAAGTTCAGACTAGAGGCT a D P S L P E V H * A S H P K A P L P A S R P * D C S G L Q V * S P I - b I R R Y Q K S T E L L I R K L P F Q R L V R E I A Q D F K S D L R - c S V A T R S P L S F S S E S S P S S V S S V R L L R T S S L I S D - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S G D S G S T W Q A E * G F A G R G A D R G H S Q E P S * T Q D G - e L D T A V L L G S L K E D S L E G E L T E D T L N S L V E L R I E S - f I R R * W F D V S S R M R F S G K W R R T R S I A * S K L D S R R - EarI EciI EcoNI | BpmI | BsaXI BsmBI | | | | | | | | TTCCAGTCCTCCGCCATCGGTGCTCTCCAGGAGTCTGTCGAGTCTTACCTCGTCTCCCTCTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AAGGTCAGGAGGCGGTAGCCACGAGAGGTCCTCAGACAGCTCAGAATGGAGCAGAGGGAGAAGCTCCTGTGGTTGGACACGCGGTAGGTGCGGTTCGCAC a P V L R H R C S P G V C R V L P R L P L R G H Q P V R H P R Q A C - b F Q S S A I G A L Q E S V E S Y L V S L F E D T N L C A I H A K R V - c S S P P P S V L S R S L S S L T S S P S S R T P T C A P S T P S V - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d I G T R R W R H E G P T Q R T K G R R G R R P C W G T R W G R W A H - e E L G G G D T S E L L R D L R V E D G E E L V G V Q A G D V G L T - f N W D E A M P A R W S D T S D * R T E R K S S V L R H A M W A L R - EcoRV AceIII BcgI | | | TTACCATCCAGTCCAAGGATATCCAGCTCGCCCGCCGCCTTCGTGGTGAGCGCAACTAAGCGAATGGCTNTGGGAGGATAACGAATTTTTTGCTTTGACA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 AATGGTAGGTCAGGTTCCTATAGGTCGAGCGGGCGGCGGAAGCACCACTCGCGTTGATTCGCTTACCGANACCCTCCTATTGCTTAAAAAACGAAACTGT a Y H P V Q G Y P A R P P P S W * A Q L S E W L W E D N E F F A L T - b T I Q S K D I Q L A R R L R G E R N * A N G ? G R I T N F L L * H - c L P S S P R I S S S P A A F V V S A T K R M A ? G G * R I F C F D T - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d * W G T W P Y G A R G G G E H H A C S L S H S ? S S L S N K A K V - e N G D L G L I D L E G A A K T T L A V L R I A ? P P Y R I K Q K S - f T V M W D L S I W S A R R R R P S R L * A F P ? P L I V F K K S Q C - EcoRV BcgI | RcaI | | | CGAAGGATATCATGGTTAGGGGATAATCAAGGCGTTCATGAAGAACAATGTTTTATACACTCAGGCTGGTACATTAAGTGGCAAGCAAGGTAGCTGGCTT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCTTCCTATAGTACCAATCCCCTATTAGTTCCGCAAGTACTTCTTGTTACAAAATATGTGAGTCCGACCATGTAATTCACCGTTCGTTCCATCGACCGAA a R R I S W L G D N Q G V H E E Q C F I H S G W Y I K W Q A R * L A L - b E G Y H G * G I I K A F M K N N V L Y T Q A G T L S G K Q G S W L - c K D I M V R G * S R R S * R T M F Y T L R L V H * V A S K V A G F - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R L I D H N P S L * P T * S S C H K I C E P Q Y M L H C A L Y S A - e V F S I M T L P Y D L R E H L V I N * V S L S T C * T A L L T A P K - f S P Y * P * P I I L A N M F F L T K Y V * A P V N L P L C P L Q S - SanDI SmaI | AhdI BclI XhoI ApaI| | | | | || | TAGCAATCGACCAACCGTCTTTGATCATCAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGGCCCGGGACCCCATTTCGCCCTATAGGGAGTCGTATTAC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 ATCGTTAGCTGGTTGGCAGAAACTAGTAGTTTTTTTTTTTTTTTTTTTTGAGCTCCCCCCCCGGGCCCTGGGGTAAAGCGGGATATCCCTCAGCATAATG a A I D Q P S L I I K K K K K K N S R G G P G T P F R P I G S R I T - b * Q S T N R L * S S K K K K K K T R G G G P G P H F A L * G V V L Q - c S N R P T V F D H Q K K K K K K L E G G A R D P I S P Y R E S Y Y - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d K A I S W G D K I M L F F F F F F E L P P G P V G N R G I P L R I V - e L L R G V T K S * * F F F F F F S S P P A R S G M E G * L S D Y * - f * C D V L R R Q D D F F F F F F V R P P P G P G W K A R Y P T T N - PvuII BfiI BpmI | | | | AATCCACTGCCCGGCGTTTTACAACGTCGGGACTGGGAAAACCCTGGCGTTACCCAACTTAATGCCCTGGAGAACATTCCCCCTTTCCCCAGCTGGCTTA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TTAGGTGACGGGCCGCAAAATGTTGCAGCCCTGACCCTTTTGGGACCGCAATGGGTTGAATTACGGGACCTCTTGTAAGGGGGAAAGGGGTCGACCGAAT a I H C P A F Y N V G T G K T L A L P N L M P W R T F P L S P A G L - b S T A R R F T T S G L G K P W R Y P T * C P G E H S P F P Q L A Y - c N P L P G V L Q R R D W E N P G V T Q L N A L E N I P P F P S W L I - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d I W Q G A N * L T P V P F V R A N G L K I G Q L V N G R E G A P K - e L G S G P T K C R R S Q S F G P T V W S L A R S F M G G K G L Q S - f C D V A R R K V V D P S P F G Q R * G V * H G P S C E G K G W S A * - MscI | TAAGCAAAAAGGCCCGCACCGAACGCCCTTCCAAAATTGGCCAACCCTAATGGCAAAGGGAAAATTGAAACCTA 901 ---------+---------+---------+---------+---------+---------+---------+---- 974 ATTCGTTTTTCCGGGCGTGGCTTGCGGGAAGGTTTTAACCGGTTGGGATTACCGTTTCCCTTTTAACTTTGGAT a * A K R P A P N A L P K L A N P N G K G K I E T - b K Q K G P H R T P F Q N W P T L M A K G K L K P - c S K K A R T E R P S K I G Q P * W Q R E N * N L - 901 ---------+---------+---------+---------+---------+---------+---------+---- 974 d Y A F L G A G F A R G F N A L G L P L P F I S V * - e I L L F A R V S R G E L I P W G * H C L S F Q F R - f L C F P G C R V G K W F Q G V R I A F P F N F G - Enzymes that do cut: AceIII AhdI ApaI BamHI BcgI BclI BfiI BpmI Bpu10I BsaXI BsmBI BsrBI BssSI EagI EarI EciI EcoNI EcoRI EcoRV KpnI MscI NotI PstI PvuII RcaI SacI SacII SanDI SmaI SpeI XbaI XhoI Enzymes that do not cut: AatII AflII AlwNI ApaBI ApaLI AscI AvrII BbsI Bce83I BglI BglII BplI Bpu1102I BsaI BsaBI BsbI BseRI BsgI BsiWI BsmI BspEI BspGI BspLU11I BspMI BsrDI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII Eco47III Eco57I FseI FspI HgiEII HindIII HpaI MfeI MluI NarI NcoI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RsrII SalI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XcmI XmnI