(Linear) MAP of: ./Fgr-C_02_A05_T3.seq check: 7225 from: 1 to: 968 Fgr-C_02_A05_T3 968 16 535 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * May 13, 2001 13:20 .. XbaI BsrBI | BpmI | | EagI | | | EcoRI SacI SacII NotI | | | SpeI BamHI SmaI PstI | BssSI | | | | | | | | | | | | CAAAGCTGGAGCTCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGGTCTTGACCCTCTCACATTTCCTC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GTTTCGACCTCGAGTGGCGCCACCGCCGGCGAGATCTTGATCACCTAGGGGGCCCGACGTCCTTAAGCCGTGCTCCCAGAACTGGGAGAGTGTAAAGGAG a Q S W S S P R W R P L * N * W I P R A A G I R H E G L D P L T F P Q - b K A G A H R G G G R S R T S G S P G L Q E F G T R V L T L S H F L - c K L E L T A V A A A L E L V D P P G C R N S A R G S * P S H I S S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d L Q L E G R H R G S * F * H I G R A A P I R C S P R S G R V N G - e F S S S V A T A A A R S S T S G G P Q L F E A R P D Q G E * M E E - f L A P A * R P P P R E L V L P D G P S C S N P V L T K V R E C K R - AACTTATTCTCACTCACTCACACTCACCAACAAACAAACAATCACAATCACAACATACACACAAACCACCTCACCAAACACTCAATCCATGCCCTACCTC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TTGAATAAGAGTGAGTGAGTGTGAGTGGTTGTTTGTTTGTTAGTGTTAGTGTTGTATGTGTGTTTGGTGGAGTGGTTTGTGAGTTAGGTACGGGATGGAG a L I L T H S H S P T N K Q S Q S Q H T H K P P H Q T L N P C P T S - b N L F S L T H T H Q Q T N N H N H N I H T N H L T K H S I H A L P L - c T Y S H S L T L T N K Q T I T I T T Y T Q T T S P N T Q S M P Y L - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d * S I R V * E C E G V F L C D C D C C V C L G G * W V S L G H G V E - e V * E * E S V S V L L C V I V I V V Y V C V V E G F V * D M G * R - f L K N E S V * V * W C V F L * L * L M C V F W R V L C E I W A R G - Bst1107I EarI BseRI | BsaXI | BglI BpmI | | AhdI | | | | | | | TCATCTGGAAACAACTACCTCTTCTCCCCATACACCTCACAAAACCACGCCACAATGGCACCCTCAGTATACATCCTCCTCCAGCGCGACACAGAGTCCA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGTAGACCTTTGTTGATGGAGAAGAGGGGTATGTGGAGTGTTTTGGTGCGGTGTTACCGTGGGAGTCATATGTAGGAGGAGGTCGCGCTGTGTCTCAGGT a H L E T T T S S P H T P H K T T P Q W H P Q Y T S S S S A T Q S P - b I W K Q L P L L P I H L T K P R H N G T L S I H P P P A R H R V H - c S S G N N Y L F S P Y T S Q N H A T M A P S V Y I L L Q R D T E S T - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d * R S V V V E E G W V G * L V V G C H C G * Y V D E E L A V C L G - e E D P F L * R K E G Y V E C F W A V I A G E T Y M R R W R S V S D - f R M Q F C S G R R G M C R V F G R W L P V R L I C G G G A R C L T W - BseRI SalI | | CAGTCATAATCTCCTCAGTCTATCTCGACCTTCAAGACGCCAACGCCGCGCTTCTCCACCTCGCACAAGAAGCAGGCGTCGACCCTGCAACTGCCAAGCC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GTCAGTATTAGAGGAGTCAGATAGAGCTGGAAGTTCTGCGGTTGCGGCGCGAAGAGGTGGAGCGTGTTCTTCGTCCGCAGCTGGGACGTTGACGGTTCGG a Q S * S P Q S I S T F K T P T P R F S T S H K K Q A S T L Q L P S L - b S H N L L S L S R P S R R Q R R A S P P R T R S R R R P C N C Q A - c V I I S S V Y L D L Q D A N A A L L H L A Q E A G V D P A T A K P - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d C D Y D G * D I E V K L V G V G R K E V E C L F C A D V R C S G L - e V T M I E E T * R S R * S A L A A S R W R A C S A P T S G A V A L G - f L * L R R L R D R G E L R W R R A E G G R V L L L R R G Q L Q W A - BcgI BcgI | | TACTGCCGATGCCGGTTCCGAACAGCCCTCGCTTGTCAAGGAGCCTCTGCGATGGGAGGCCGCCGATGGAACTGCCGCCTGNGTTGAGCGCCATGCTGTG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ATGACGGCTACGGCCAAGGCTTGTCGGGAGCGAACAGTTCCTCGGAGACGCTACCCTCCGGCGGCTACCTTGACGGCGGACNCAACTCGCGGTACGACAC a L P M P V P N S P R L S R S L C D G R P P M E L P P ? L S A M L * - b Y C R C R F R T A L A C Q G A S A M G G R R W N C R L ? * A P C C D - c T A D A G S E Q P S L V K E P L R W E A A D G T A A ? V E R H A V - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R S G I G T G F L G R K D L L R Q S P L G G I S S G G ? N L A M S H - e V A S A P E S C G E S T L S G R R H S A A S P V A A Q T S R W A T - f * Q R H R N R V A R A Q * P A E A I P P R R H F Q R R ? Q A G H Q - EarI | ACAAATCGCAAGACGCACGCCTCTGGCTCTGCTGGCGCTGCTGATAAGCCTGNGTTGAAGAGGAATGATAGTCGGTTGTATGTCAACGATGATGATGATN 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TGTTTAGCGTTCTGCGTGCGGAGACCGAGACGACCGCGACGACTATTCGGACNCAACTTCTCCTTACTATCAGCCAACATACAGTTGCTACTACTACTAN a Q I A R R T P L A L L A L L I S L ? * R G M I V G C M S T M M M ? - b K S Q D A R L W L C W R C * * A ? V E E E * * S V V C Q R * * * ? - c T N R K T H A S G S A G A A D K P ? L K R N D S R L Y V N D D D D ? - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d C I A L R V G R A R S A S S I L R ? Q L P I I T P Q I D V I I I I - e V F R L V C A E P E A P A A S L G ? N F L F S L R N Y T L S S S S - f S L D C S A R R Q S Q Q R Q Q Y A Q T S S S H Y D T T H * R H H H ? - BstEII Pfl1108I | | GTATCGAGGTTACCGACCATGATGGGCACTACGATTAAAGATGGAATCAACGATTTGAATTTAATGCNNGAGAAATATATGCTAAATAGCGTGAGAGTAA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CATAGCTCCAATGGCTGGTACTACCCGTGATGCTAATTTCTACCTTAGTTGCTAAACTTAAATTACGNNCTCTTTATATACGATTTATCGCACTCTCATT a V S R L P T M M G T T I K D G I N D L N L M ? E K Y M L N S V R V I - b Y R G Y R P * W A L R L K M E S T I * I * C ? R N I C * I A * E * - c I E V T D H D G H Y D * R W N Q R F E F N A ? E I Y A K * R E S N - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d T D L N G V M I P V V I L S P I L S K F K I ? S F Y I S F L T L T - e ? I S T V S W S P C * S * L H F * R N S N L A ? S I Y A L Y R S L L - f Y R P * R G H H A S R N F I S D V I Q I * H ? L F I H * I A H S Y - BsmI BsrDI ApaI | | | TTCAATCTTTATAGGCATTCAAAGCAATGGTTATCAAAAAAAAAAAAAAAAAAAAAATTCGAGGGGGGGCCCCGGTCCCCAATTCCCCCTATAAGGAGCC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AAGTTAGAAATATCCGTAAGTTTCGTTACCAATAGTTTTTTTTTTTTTTTTTTTTTTAAGCTCCCCCCCGGGGCCAGGGGTTAAGGGGGATATTCCTCGG a Q S L * A F K A M V I K K K K K K K I R G G A P V P N S P Y K E P - b F N L Y R H S K Q W L S K K K K K K K F E G G P R S P I P P I R S R - c S I F I G I Q S N G Y Q K K K K K K N S R G G P G P Q F P L * G A - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d I * D K Y A N L A I T I L F F F F F F I R P P A G T G L E G * L S G - e E I K I P M * L L P * * F F F F F F F E L P P G P G W N G R Y P A - f N L R * L C E F C H N D F F F F F F F N S P P G R D G I G G I L L - XcmI KpnI PvuII | | | GTATTACAATCACTGGCCCGCCGTTTACCACCGCGTAAATGGGAAAAACCTGGCGGTACCCCACTAAATTGCCTTGGAGAAAATTCCCCTTTTTGCCAGC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 CATAATGTTAGTGACCGGGCGGCAAATGGTGGCGCATTTACCCTTTTTGGACCGCCATGGGGTGATTTAACGGAACCTCTTTTAAGGGGAAAAACGGTCG a Y Y N H W P A V Y H R V N G K N L A V P H * I A L E K I P L F A S - b I T I T G P P F T T A * M G K T W R Y P T K L P W R K F P F L P A - c V L Q S L A R R L P P R K W E K P G G T P L N C L G E N S P F C Q L - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d Y * L * Q G A T * W R T F P F F R A T G W * I A K S F I G R K A L - e T N C D S A R R K G G R L H S F G P P V G S F Q R P S F E G K Q W - f R I V I V P G G N V V A Y I P F V Q R Y G V L N G Q L F N G K K G A - TGGGGGTATGACGAAAAGCCCCCCCCGATAGCCCTCCCAAAAATGCCCCACCCGAAGGGGAAAGGAAA 901 ---------+---------+---------+---------+---------+---------+-------- 968 ACCCCCATACTGCTTTTCGGGGGGGGCTATCGGGAGGGTTTTTACGGGGTGGGCTTCCCCTTTCCTTT a W G Y D E K P P P I A L P K M P H P K G K G - b G G M T K S P P R * P S Q K C P T R R G K E - c G V * R K A P P D S P P K N A P P E G E R K - 901 ---------+---------+---------+---------+---------+---------+-------- 968 d Q P Y S S F G G G I A R G F I G W G F P F P F - e S P T H R F A G G S L G G L F A G G S P S L F - f P P I V F L G G R Y G E W F H G V R L P F S - Enzymes that do cut: AhdI ApaI BamHI BcgI BglI BpmI BsaXI BseRI BsmI BsrBI BsrDI BssSI Bst1107I BstEII EagI EarI EcoRI KpnI NotI Pfl1108I PstI PvuII SacI SacII SalI SmaI SpeI XbaI XcmI Enzymes that do not cut: AatII AceIII AflII AlwNI ApaBI ApaLI AscI AvrII BbsI Bce83I BclI BfiI BglII BplI Bpu10I Bpu1102I BsaI BsaBI BsbI BsgI BsiWI BsmBI BspEI BspGI BspLU11I BspMI BsrGI BssHII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III Eco57I EcoNI EcoRV FseI FspI HgiEII HindIII HpaI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XhoI XmnI