(Linear) MAP of: ./Fgr-C_02_A06_T3.seq check: 4896 from: 1 to: 880 Fgr-C_02_A06_T3 880 7 198 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * May 13, 2001 13:20 .. XbaI BsrBI | BpmI | | EagI | | | EcoRI SacI SacII NotI | | | SpeI BamHI SmaI PstI | BssSI Bce83I | | | | | | | | | | | | | GCACAAGCTGGAGCTCCCCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTTGAGGTGCCCGCTATCGAGC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGTTCGACCTCGAGGGGCGCCACCGCCGGCGAGATCTTGATCACCTAGGGGGCCCGACGTCCTTAAGCCGTGCTCCGAACTCCACGGGCGATAGCTCG a A Q A G A P R G G G R S R T S G S P G L Q E F G T R L E V P A I E R - b H K L E L P A V A A A L E L V D P P G C R N S A R G L R C P L S S - c T S W S S P R W R P L * N * W I P R A A G I R H E A * G A R Y R A - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d V L Q L E G R H R G S * F * H I G R A A P I R C S A Q P A R * R A - e C L S S S G A T A A A R S S T S G G P Q L F E A R P K L H G S D L - f C A P A G R P P P R E L V L P D G P S C S N P V L S S T G A I S - Eco57I HpaI | ClaI EcoRI | | | | GCCCTGTTGCTGCCCCTGAAGTTTCTGAACCTGTTAACGCCGCCCCTATCGATGCTGAGTTTGAGTCTGACCCTGAATTCGCCTTGTTCCACACTGAAGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGGGACAACGACGGGGACTTCAAAGACTTGGACAATTGCGGCGGGGATAGCTACGACTCAAACTCAGACTGGGACTTAAGCGGAACAAGGTGTGACTTCG a P V A A P E V S E P V N A A P I D A E F E S D P E F A L F H T E A - b A L L L P L K F L N L L T P P L S M L S L S L T L N S P C S T L K P - c P C C C P * S F * T C * R R P Y R C * V * V * P * I R L V P H * S - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d G Q Q Q G Q L K Q V Q * R R G * R H Q T Q T Q G Q I R R T G C Q L - e A R N S G R F N R F R N V G G R D I S L K L R V R F E G Q E V S F - f R G T A A G S T E S G T L A A G I S A S N S D S G S N A K N W V S A - Eco57I Eco57I Bsu36I BplI BseRI SalI | BssHII | | | | | | | CGCTACCACCGNCACCGAGTCACCTGAGGAGTTTGACTCTGAAGGGTTGTCGCACGTCGACATCTTTTGGCGGTGTGAGTCTGAGAAGGTNCTTGCGCGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GCGATGGTGGCNGTGGCTCAGTGGACTCCTCAAACTGAGACTTCCCAACAGCGTGCAGCTGTAGAAAACCGCCACACTCAGACTCTTCCANGAACGCGCG a A T T ? T E S P E E F D S E G L S H V D I F W R C E S E K V L A R - b L P P ? P S H L R S L T L K G C R T S T S F G G V S L R R ? L R A - c R Y H R H R V T * G V * L * R V V A R R H L L A V * V * E G ? C A P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d R * W R ? R T V Q P T Q S Q L T T A R R C R K A T H T Q S P ? Q A - e G S G G ? G L * R L L K V R F P Q R V D V D K P P T L R L L ? K R A - f A V V ? V S D G S S N S E S P N D C T S M K Q R H S D S F T ? A R - DraI | CTGGAACTCGTCAATGCTGGTGGAACAAGAAATGCCAGCCCGCCCTTGCTTTGGCTTGTGGGCAAAGGTTTAAAGGCCACATTTTGAAACCTTGGAACCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GACCTTGAGCAGTTACGACCACCTTGTTCTTTACGGTCGGGCGGGAACGAAACCGAACACCCGTTTCCAAATTTCCGGTGTAAAACTTTGGAACCTTGGA a L E L V N A G G T R N A S P P L L W L V G K G L K A T F * N L G T * - b W N S S M L V E Q E M P A R P C F G L W A K V * R P H F E T L E P - c G T R Q C W W N K K C Q P A L A L A C G Q R F K G H I L K P W N L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G P V R * H Q H F L F H W G A R A K A Q P C L N L P W M K F G Q F R - e Q F E D I S T S C S I G A R G Q K P K H A F T * L G C K S V K S G - f R S S T L A P P V L F A L G G K S Q S T P L P K F A V N Q F R P V - DraI AvrII ApaI SacII ApaI | | | | | AAAAAATAAAAAGGTGGTTTTAAACACAGACCCCCCTAGGGGGGGGGGGCGCTAAAAGGGGGCCCCCCCGCGGGGGGGGGGGGAAAAAGGGGGCCCCCCC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TTTTTTATTTTTCCACCAAAATTTGTGTCTGGGGGGATCCCCCCCCCCCGCGATTTTCCCCCGGGGGGGCGCCCCCCCCCCCCTTTTTCCCCCGGGGGGG a K I K R W F * T Q T P L G G G G A K R G P P R G G G G K K G A P P - b K K * K G G F K H R P P * G G G A L K G G P P A G G G G K R G P P P - c K N K K V V L N T D P P R G G G R * K G A P P R G G G E K G G P P - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d F F L F T T K F V S G G L P P P R * F P A G G R P P P S F P P G G - e L F Y F P P K L C L G G * P P P A S F P P G G A P P P P F L P G G - f * F I F L H N * V C V G R P P P P A L L P G G R P P P P F F P A G G - ApaI | CCCCCCCCCCCCGCCCCTTTTTTTTTGGGGGGGGGGGTTTTTTCTCCNNNNNNGGGGGAAGGAGGGGGGGGGGGCCCCCCCCCCCCCCGACATTAGAGAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GGGGGGGGGGGGCGGGGAAAAAAAAACCCCCCCCCCCAAAAAAGAGGNNNNNNCCCCCTTCCTCCCCCCCCCCCGGGGGGGGGGGGGGCTGTAATCTCTC a P P P P P L F F W G G G F F L ? ? ? G K E G G G A P P P P D I R E - b P P P R P F F F G G G G F F S ? ? G G R R G G G P P P P P T L E R - c P P P P A P F F L G G G V F S P ? ? G E G G G G G P P P P R H * R G - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d G G G G A G K K K P P P T K E G ? ? P S P P P P P G G G G R C * L - e G G G G R G K K K P P P P K K E ? ? P P L L P P P G G G G G V N S L - f G G G G G R K K Q P P P N K R ? ? ? P F S P P P A G G G G S M L S - BseRI | GAGAAACCCCCCCTGGGGGGGGGGGGGACATTTTTATGGCCCCCCCCCCCCACCGGGGGGGGGGGGGGGGGGTAAAAAAAAAAAAAAGGTTTTTTTTTTT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CTCTTTGGGGGGGACCCCCCCCCCCCCTGTAAAAATACCGGGGGGGGGGGGTGGCCCCCCCCCCCCCCCCCCATTTTTTTTTTTTTTCCAAAAAAAAAAA a E K P P L G G G G T F L W P P P P T G G G G G G * K K K K G F F F F - b R N P P W G G G G H F Y G P P P P P G G G G G G K K K K K V F F F - c E T P P G G G G D I F M A P P P H R G G G G G V K K K K R F F F F - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P S V G G P P P P S M K I A G G G W R P P P P P T F F F F L N K K K - e L F G G Q P P P P C K * P G G G G G P P P P P P L F F F F T K K K - f S F G G R P P P P V N K H G G G G V P P P P P P Y F F F F P K K K - DraI EarI ApaI | | | TTTTTTGTTTTTTTTAAAAAAAAAAAAAAAAAAAAACAAAAACAAAAATTTTTTGTTTTTATAAAAAAAGAAGAGAGGGGGGGGGGGCCCCCCCCCCCCC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AAAAAACAAAAAAAATTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTAAAAAACAAAAATATTTTTTTCTTCTCTCCCCCCCCCCCGGGGGGGGGGGGG a F C F F * K K K K K K T K T K I F C F Y K K R R E G G G A P P P P - b F F V F F K K K K K K K Q K Q K F F V F I K K E E R G G G P P P P P - c F L F F L K K K K K K N K N K N F L F L * K K K R G G G G P P P P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d K K N K K F F F F F F F L F L F K K N K Y F F F L P P P P G G G G - e K K T K K L F F F F F F C F C F N K T K I F F S S L P P P G G G G - f K K Q K K * F F F F F F V F V F I K Q K * L F L L S P P P A G G G G - CCCCCCCCCCCTTTTTTTTTTTGGTGGGGGGAGAAGAAAAAAAAAAAAAAAAAAAAAAAATGGGGGGCGGGGCGGGCGGG 801 ---------+---------+---------+---------+---------+---------+---------+---------+ 880 GGGGGGGGGGGAAAAAAAAAAACCACCCCCCTCTTCTTTTTTTTTTTTTTTTTTTTTTTTACCCCCCGCCCCGCCCGCCC a P P P L F F F G G G R R K K K K K K K N G G R G G R - b P P P F F F L V G G E E K K K K K K K M G G G A G G - c P P P P F F F W W G E K K K K K K K K K W G A G R A - 801 ---------+---------+---------+---------+---------+---------+---------+---------+ 880 d G G G G K K K Q H P S F F F F F F F F F H P A P R A P - e G G G G K K K K T P P S S F F F F F F F I P P P A P P - f G G G R K K K P P P L L F F F F F F F F P P R P P R - Enzymes that do cut: ApaI AvrII BamHI Bce83I BplI BpmI BseRI BsrBI BssHII BssSI Bsu36I ClaI DraI EagI EarI Eco57I EcoRI HpaI NotI PstI SacI SacII SalI SmaI SpeI XbaI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI BbsI BcgI BclI BfiI BglI BglII Bpu10I Bpu1102I BsaI BsaBI BsaXI BsbI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrDI BsrGI Bst1107I BstEII BstXI DraIII DrdI DrdII EciI Eco47III EcoNI EcoRV FseI FspI HgiEII HindIII KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI PvuII RcaI RsrII SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XcmI XhoI XmnI