(Linear) MAP of: ./Fgr-C_02_A08_T3.seq check: 8030 from: 1 to: 975 Fgr-C_02_A08_T3 975 23 613 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * May 13, 2001 13:20 .. XbaI BsrBI | BstXI EagI | | EcoRI BamHI SacII| NotI | | SpeI BamHI SmaI PstI | BssSI | || | | | | | | | | | | NGGCATAAAGCTGGNAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGATCCAATCCTCACTCAC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 NCCGTATTTCGACCNTCGAGGTGGCGCCACCGCCGGCGAGATCTTGATCACCTAGGGGGCCCGACGTCCTTAAGCCGTGCTCCTAGGTTAGGAGTGAGTG a ? H K A G S S T A V A A A L E L V D P P G C R N S A R G S N P H S Q - b G I K L ? A P P R W R P L * N * W I P R A A G I R H E D P I L T H - c A * S W ? L H R G G G R S R T S G S P G L Q E F G T R I Q S S L T - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d P M F S ? A G G R H R G S * F * H I G R A A P I R C S S G I R V * - e C L A P L E V A T A A A R S S T S G G P Q L F E A R P D L G * E - f A Y L Q ? S W R P P P R E L V L P D G P S C S N P V L I W D E S V - XcmI Bce83I | BsaI | | | AAACACTTTCAAACAAACCAACCCCCAAACAACCAACCACTATCACAATGGAGTCCCTCAAGCAAGGTGTCAACTACGTCGCTGAGACCGTTCAGCAGGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TTTGTGAAAGTTTGTTTGGTTGGGGGTTTGTTGGTTGGTGATAGTGTTACCTCAGGGAGTTCGTTCCACAGTTGATGCAGCGACTCTGGCAAGTCGTCCG a T L S N K P T P K Q P T T I T M E S L K Q G V N Y V A E T V Q Q A - b K H F Q T N Q P P N N Q P L S Q W S P S S K V S T T S L R P F S R P - c N T F K Q T N P Q T T N H Y H N G V P Q A R C Q L R R * D R S A G - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d L C K * V F W G G F L W G S D C H L G E L L T D V V D S L G N L L - e C V S E F L G V G L C G V V I V I S D R L C P T L * T A S V T * C A - f F V K L C V L G W V V L W * * L P T G * A L H * S R R Q S R E A P - BsaI BspMI BsrDI AhdI | | | | CGCCTCTGGTGCTTCCAAGGAGACCAACAAGCAGGTCGCCAAGGACAGCAATGCCCCCATCGGCACCCGTGCCTCCGCTGCCAAGGACGCCCTGTCCGAC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GCGGAGACCACGAAGGTTCCTCTGGTTGTTCGTCCAGCGGTTCCTGTCGTTACGGGGGTAGCCGTGGGCACGGAGGCGACGGTTCCTGCGGGACAGGCTG a A S G A S K E T N K Q V A K D S N A P I G T R A S A A K D A L S D - b P L V L P R R P T S R S P R T A M P P S A P V P P L P R T P C P T - c R L W C F Q G D Q Q A G R Q G Q Q C P H R H P C L R C Q G R P V R Q - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G G R T S G L L G V L L D G L V A I G G D A G T G G S G L V G Q G V - e A E P A E L S V L L C T A L S L L A G M P V R A E A A L S A R D S - f R R Q H K W P S W C A P R W P C C H G W R C G H R R Q W P R G T R - HgiEII BbsI | | | AAGGCCGACGAGAAGACCCATGAGGGTAAGGCCAGCGTCCACAAGGAGGCCATCTAAGTTTGTCTTAATCGAAGAACGACATGATACAGAAATCACCTTC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTCCGGCTGCTCTTCTGGGTACTCCCATTCCGGTCGCAGGTGTTCCTCCGGTAGATTCAAACAGAATTAGCTTCTTGCTGTACTATGTCTTTAGTGGAAG a K A D E K T H E G K A S V H K E A I * V C L N R R T T * Y R N H L L - b R P T R R P M R V R P A S T R R P S K F V L I E E R H D T E I T F - c G R R E D P * G * G Q R P Q G G H L S L S * S K N D M I Q K S P S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d L G V L L G M L T L G A D V L L G D L N T K I S S R C S V S I V K - e L A S S F V W S P L A L T W L S A M * T Q R L R L V V H Y L F * R - f C P R R S S G H P Y P W R G C P P W R L K D * D F F S M I C F D G E - BbsI Eco57I Bst1107I | | | TGAAGACATGGATCGCAACGGCGTTGAAAGGGAATAGCGTTGGGACTACATAGGCTGTATACACCTACACCTAATACAAACAGTCAAATACCACAAAAAA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ACTTCTGTACCTAGCGTTGCCGCAACTTTCCCTTATCGCAACCCTGATGTATCCGACATATGTGGATGTGGATTATGTTTGTCAGTTTATGGTGTTTTTT a K T W I A T A L K G N S V G T T * A V Y T Y T * Y K Q S N T T K K - b * R H G S Q R R * K G I A L G L H R L Y T P T P N T N S Q I P Q K K - c E D M D R N G V E R E * R W D Y I G C I H L H L I Q T V K Y H K K - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d Q L C P D C R R Q F P I A N P S C L S Y V G V G L V F L * I G C F - e R F V H I A V A N F P F L T P V V Y A T Y V * V * Y L C D F V V F F - f S S M S R L P T S L S Y R Q S * M P Q I C R C R I C V T L Y W L F - XhoI ApaI KpnI BfiI | | | | AAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TTTTTTTTTTTTTGAGCTCCCCCCCGGGCCATGGGTTAAGCGGGATATCACTCAGCATAATGTTAAGTGACCGGCAGCAAAATGTTGCAGCACTGACCCT a K K K K L E G G P G T Q F A L * * V V L Q F T G R R F T T S * L G - b K K K N S R G G P V P N S P Y S E S Y Y N S L A V V L Q R R D W E - c K K K K T R G G A R Y P I R P I V S R I T I H W P S F Y N V V T G K - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d F F F F F E L P P G T G L E G * L S D Y * L E S A T T K C R R S Q S - e F F F F S S P P G P V W N A R Y H T T N C N V P R R K V V D H S P - f F F F F V R P P A R Y G I R G I T L R I V I * Q G D N * L T T V P - PvuII EarI PvuI | | | AAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TTTGGGACCGCAATGGGTTGAATTAGCGGAACGTCGTGTAGGGGGAAAGCGGTCGACCGCATTATCGCTTCTCCGGGCGTGGCTAGCGGGAAGGGTTGTC a K P W R Y P T * S P C S T S P F R Q L A * * R R G P H R S P F P T V - b N P G V T Q L N R L A A H P P F A S W R N S E E A R T D R P S Q Q - c T L A L P N L I A L Q H I P L S P A G V I A K R P A P I A L P N S - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d F G P T V W S L R R A A C G G K A L Q R L L S S A R V S R G E W C - e F G Q R * G V * D G Q L V D G K R W S A Y Y R L P G C R D G K G V - f F V R A N G L K I A K C C M G R E G A P T I A F L G A G I A R G L L - FspI MfeI SspI AceIII | | | | TTGCGCAACCTGAATGGCGAATGGCAATTGTAAGCGTTAATATTTTGTTAAATTCGCGTTAAATTTTGTTAATCAGCTCATTTTTTAACCCATAGCCGAA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AACGCGTTGGACTTACCGCTTACCGTTAACATTCGCAATTATAAAACAATTTAAGCGCAATTTAAAACAATTAGTCGAGTAAAAAATTGGGTATCGGCTT a A Q P E W R M A I V S V N I L L N S R * I L L I S S F F N P * P K - b L R N L N G E W Q L * A L I F C * I R V K F C * S A H F L T H S R N - c C A T * M A N G N C K R * Y F V K F A L N F V N Q L I F * P I A E - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d N R L R F P S H C N Y A N I N Q * I R T L N Q * D A * K K V W L R - e T A C G S H R I A I T L T L I K N F E R * I K N I L E N K L G Y G F - f Q A V Q I A F P L Q L R * Y K T L N A N F K T L * S M K * G M A S - BsbI AhdI | | ATTCGNAAATCCTTTATAAATCAAGGATAGACCGAGATAGGGTGAGTGTTGTCCAATTTGGAACAGATCCCTTATTAAGAACGTGACTCCACGTCAAAGG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TAAGCNTTTAGGAAATATTTAGTTCCTATCTGGCTCTATCCCACTCACAACAGGTTAAACCTTGTCTAGGGAATAATTCTTGCACTGAGGTGCAGTTTCC a F ? N P L * I K D R P R * G E C C P I W N R S L I K N V T P R Q R - b S ? I L Y K S R I D R D R V S V V Q F G T D P L L R T * L H V K G - c I R K S F I N Q G * T E I G * V L S N L E Q I P Y * E R D S T S K A - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d F E ? I R * L D L I S R S L T L T T W N P V S G K N L V H S W T L P - e N ? F G K Y I L S L G L Y P S H Q G I Q F L D R I L F T V G R * L - f I R ? D K I F * P Y V S I P H T N D L K S C I G * * S R S E V D F - PinAI | CGAAAACCGGTATCAAGGCATGGCCCACTACTAACCTTCCCTATAAGTTTTGGGGGTGAGGGCCGAAGCCTAAAA 901 ---------+---------+---------+---------+---------+---------+---------+----- 975 GCTTTTGGCCATAGTTCCGTACCGGGTGATGATTGGAAGGGATATTCAAAACCCCCACTCCCGGCTTCGGATTTT a R K P V S R H G P L L T F P I S F G G E G R S L K - b E N R Y Q G M A H Y * P S L * V L G V R A E A * - c K T G I K A W P T T N L P Y K F W G * G P K P K - 901 ---------+---------+---------+---------+---------+---------+---------+----- 975 d S F R Y * P M A W * * G E R Y T K P T L A S A * F - e R F G T D L C P G S S V K G I L K P P S P R L R F - f A F V P I L A H G V V L R G * L N Q P H P G F G L - Enzymes that do cut: AceIII AhdI ApaI BamHI BbsI Bce83I BfiI BsaI BsbI BspMI BsrBI BsrDI BssSI Bst1107I BstXI EagI EarI Eco57I EcoRI FspI HgiEII KpnI MfeI NotI PinAI PstI PvuI PvuII SacII SmaI SpeI SspI XbaI XcmI XhoI Enzymes that do not cut: AatII AflII AlwNI ApaBI ApaLI AscI AvrII BcgI BclI BglI BglII BplI BpmI Bpu10I Bpu1102I BsaBI BsaXI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BsrGI BssHII BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EciI Eco47III EcoNI EcoRV FseI HindIII HpaI MluI MscI NarI NcoI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PmeI PmlI PshAI Psp1406I RcaI RsrII SacI SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI SrfI Sse8387I Sse8647I StuI SwaI Tth111I VspI XmnI