(Linear) MAP of: ./Fgr-C_02_A09_T3.seq check: 4062 from: 1 to: 945 Fgr-C_02_A09_T3 945 6 642 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * May 13, 2001 13:20 .. BsrBI BpmI | EagI | | EcoRI SacI SacII NotI | | SpeI BamHI SmaI PstI | DraI | | | | | | | | | | | GGGGAAAAAGCTGGAGCTCCCCGCGGTGGCGGCCGCTCTAACTAGTGGATCCCCCGGGCTGCAGGAATTCGCACAGCTTAACACCCTTTTTAAACACTTC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCCCTTTTTCGACCTCGAGGGGCGCCACCGCCGGCGAGATTGATCACCTAGGGGGCCCGACGTCCTTAAGCGTGTCGAATTGTGGGAAAAATTTGTGAAG a G E K A G A P R G G G R S N * W I P R A A G I R T A * H P F * T L P - b G K K L E L P A V A A A L T S G S P G L Q E F A Q L N T L F K H F - c G K S W S S P R W R P L * L V D P P G C R N S H S L T P F L N T S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d P F F S S S G A T A A A R V L P D G P S C S N A C S L V R K L C K - e S F A P A G R P P P R E L * H I G R A A P I R V A * C G K * V S - f P F L Q L E G R H R G S * S T S G G P Q L F E C L K V G K K F V E - EarI | CTTCCACCACCAAACAATCTTCACAATGGCTGGCGACTGTGGCTGCTCTGGTGCCTCTTCTTGCAACTGCGGCTCTAGCTGCTCTTGCTCTGGCTGCGGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GAAGGTGGTGGTTTGTTAGAAGTGTTACCGACCGCTGACACCGACGAGACCACGGAGAAGAACGTTGACGCCGAGATCGACGAGAACGAGACCGACGCCG a S T T K Q S S Q W L A T V A A L V P L L A T A A L A A L A L A A A - b L P P P N N L H N G W R L W L L W C L F L Q L R L * L L L L W L R Q - c F H H Q T I F T M A G D C G C S G A S S C N C G S S C S C S G C G - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d R G G G F L R * L P Q R S H S S Q H R K K C S R S * S S K S Q S R - e G E V V L C D E C H S A V T A A R T G R R A V A A R A A R A R A A A - f K W W W V I K V I A P S Q P Q E P A E E Q L Q P E L Q E Q E P Q P - BclI HindIII | | AAATAAACAACTTGATCTTTGATCATTCGGATACCACTTGTTCTAGGCCCAAGCTTGGGTCAAGATACATCCTTTGACGACGAATCACGGACGGAGTTAT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TTTATTTGTTGAACTAGAAACTAGTAAGCCTATGGTGAACAAGATCCGGGTTCGAACCCAGTTCTATGTAGGAAACTGCTGCTTAGTGCCTGCCTCAATA a N K Q L D L * S F G Y H L F * A Q A W V K I H P L T T N H G R S Y - b I N N L I F D H S D T T C S R P K L G S R Y I L * R R I T D G V M - c K * T T * S L I I R I P L V L G P S L G Q D T S F D D E S R T E L * - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d C I F L K I K S * E S V V Q E L G L S P D L Y M R Q R R I V S P T I - e F L C S S R Q D N P Y W K N * A W A Q T L I C G K V V F * P R L * - f L Y V V Q D K I M R I G S T R P G L K P * S V D K S S S D R V S N - EciI RcaI HindIII | | | GAAGGGCGGAGTTGAGATCATGATGTGATTGGGATATGCGCTTGGATAGTTAGCTACAGATTAAGCTTAAATACTACCCTTGTGCTGAGTAAAAAAAAAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CTTCCCGCCTCAACTCTAGTACTACACTAACCCTATACGCGAACCTATCAATCGATGTCTAATTCGAATTTATGATGGGAACACGACTCATTTTTTTTTT a E G R S * D H D V I G I C A W I V S Y R L S L N T T L V L S K K K K - b K G G V E I M M * L G Y A L G * L A T D * A * I L P L C * V K K K - c R A E L R S * C D W D M R L D S * L Q I K L K Y Y P C A E * K K K - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d F P P T S I M I H N P Y A S P Y N A V S * A * I S G K H Q T F F F - e S P R L Q S * S T I P I H A Q I T L * L N L K F V V R T S L L F F - f H L A S N L D H H S Q S I R K S L * S C I L S L Y * G Q A S Y F F F - XhoI ApaI KpnI BfiI | | | | AAAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TTTTTTTTTTTGAGCTCCCCCCCGGGCCATGGGTTAAGCGGGATATCACTCAGCATAATGTTAAGTGACCGGCAGCAAAATGTTGCAGCACTGACCCTTT a K K K L E G G P G T Q F A L * * V V L Q F T G R R F T T S * L G K - b K K K N S R G G P V P N S P Y S E S Y Y N S L A V V L Q R R D W E N - c K K K T R G G A R Y P I R P I V S R I T I H W P S F Y N V V T G K - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d F F F F E L P P G T G L E G * L S D Y * L E S A T T K C R R S Q S - e F F F F S S P P G P V W N A R Y H T T N C N V P R R K V V D H S P F - f F F F V R P P A R Y G I R G I T L R I V I * Q G D N * L T T V P F - PvuII EarI PvuI | | | ACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TGGGACCGCAATGGGTTGAATTAGCGGAACGTCGTGTAGGGGGAAAGCGGTCGACCGCATTATCGCTTCTCCGGGCGTGGCTAGCGGGAAGGGTTGTCAA a P W R Y P T * S P C S T S P F R Q L A * * R R G P H R S P F P T V - b P G V T Q L N R L A A H P P F A S W R N S E E A R T D R P S Q Q L - c T L A L P N L I A L Q H I P L S P A G V I A K R P A P I A L P N S C - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d F G P T V W S L R R A A C G G K A L Q R L L S S A R V S R G E W C N - e G Q R * G V * D G Q L V D G K R W S A Y Y R L P G C R D G K G V T - f V R A N G L K I A K C C M G R E G A P T I A F L G A G I A R G L L - FspI BglI SspI AceIII | | | | GCGCAGCCTGAATGGCGAATGGCAAATTGTAAGCGTTAATATTTTGTTAAAATTCGCGTTAAATTTTTGTTAAATCAGCTCATTTTTTAACCAATAGGCC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CGCGTCGGACTTACCGCTTACCGTTTAACATTCGCAATTATAAAACAATTTTAAGCGCAATTTAAAAACAATTTAGTCGAGTAAAAAATTGGTTATCCGG a A Q P E W R M A N C K R * Y F V K I R V K F L L N Q L I F * P I G R - b R S L N G E W Q I V S V N I L L K F A L N F C * I S S F F N Q * A - c A A * M A N G K L * A L I F C * N S R * I F V K S A H F L T N R P - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d R L R F P S H C I T L T L I K N F N A N F K Q * I L E N K L W Y A - e A C G S H R I A F Q L R * Y K T L I R T L N K N F * S M K * G I P - f Q A A Q I A F P L N Y A N I N Q * F E R * I K T L D A * K K V L L G - BsbI BsaXI DrdI | | | GAAATCNGCAAAATCCTTATAAATCAAAAGAATAGACCGAGATAGGGTTGAGTGTTGTTCCAGTTTGGAACAAGATTCACTATTAAGAACCGTGACTCCC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CTTTAGNCGTTTTAGGAATATTTAGTTTTCTTATCTGGCTCTATCCCAACTCACAACAAGGTCAAACCTTGTTCTAAGTGATAATTCTTGGCACTGAGGG a N ? Q N P Y K S K E * T E I G L S V V P V W N K I H Y * E P * L P - b E I ? K I L I N Q K N R P R * G * V L F Q F G T R F T I K N R D S H - c K S A K S L * I K R I D R D R V E C C S S L E Q D S L L R T V T P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d S I ? L I R I F * F F L G L Y P Q T N N W N P V L N V I L F R S E - e R F ? C F G * L D F S Y V S I P N L T T G T Q F L I * * * S G H S G - f F D A F D K Y I L L I S R S L T S H Q E L K S C S E S N L V T V G - NcoI | ACGTCAAAGGGCGAAAAACCGTTTATCAGGCCATGGCCCACTTCCTGACCATTACCTTAATCAATTTTTTGGGGGCGAGGTGCCGTAAAGCCTTAAATCG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TGCAGTTTCCCGCTTTTTGGCAAATAGTCCGGTACCGGGTGAAGGACTGGTAATGGAATTAGTTAAAAAACCCCCGCTCCACGGCATTTCGGAATTTAGC a R Q R A K N R L S G H G P L P D H Y L N Q F F G G E V P * S L K S - b V K G R K T V Y Q A M A H F L T I T L I N F L G A R C R K A L N R - c T S K G E K P F I R P W P T S * P L P * S I F W G R G A V K P * I E - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d W T L P R F V T * * A M A W K R V M V K I L K K P A L H R L A K F R - e R * L A F F R K D P W P G S G S W * R L * N K P P S T G Y L R L D - f V D F P S F G N I L G H G V E Q G N G * D I K Q P R P A T F G * I - Bsu36I DraI | | AACCCTTAGGGGAGCCCCCATTTAAACTTCACCGGAAAACCGGCA 901 ---------+---------+---------+---------+----- 945 TTGGGAATCCCCTCGGGGGTAAATTTGAAGTGGCCTTTTGGCCGT a N P * G S P H L N F T G K P A - b T L R G A P I * T S P E N R - c P L G E P P F K L H R K T G - 901 ---------+---------+---------+---------+----- 945 d V R L P A G M * V E G S F R C - e F G * P L G W K F K V P F G A - f S G K P S G G N L S * R F V P - Enzymes that do cut: AceIII ApaI BamHI BclI BfiI BglI BpmI BsaXI BsbI BsrBI Bsu36I DraI DrdI EagI EarI EciI EcoRI FspI HindIII KpnI NcoI NotI PstI PvuI PvuII RcaI SacI SacII SmaI SpeI SspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BbsI Bce83I BcgI BglII BplI Bpu10I Bpu1102I BsaI BsaBI BseRI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrDI BsrGI BssHII BssSI Bst1107I BstEII BstXI ClaI DraIII DrdII Eco47III Eco57I EcoNI EcoRV FseI HgiEII HpaI MfeI MluI MscI NarI NdeI NgoAIV NheI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I RsrII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SnaBI SphI SrfI Sse8387I Sse8647I StuI SwaI Tth111I VspI XbaI XcmI XmnI