(Linear) MAP of: ./Fgr-C_02_A13_T3.seq check: 7296 from: 1 to: 956 Fgr-C_02_A13_T3 956 10 601 ABI Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * May 13, 2001 13:20 .. XbaI BsrBI | BpmI | | EagI | | | EcoRI SacI SacII NotI | | | SpeI BamHI SmaI PstI | BssSI BseRI | | | | | | | | | | | | | GGGTAAAAAGCTGGAGCTCCCCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGAGCAAGTCAAGATGCCTCC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCCATTTTTCGACCTCGAGGGGCGCCACCGCCGGCGAGATCTTGATCACCTAGGGGGCCCGACGTCCTTAAGCCGTGCTCCTCGTTCAGTTCTACGGAGG a G * K A G A P R G G G R S R T S G S P G L Q E F G T R S K S R C L P - b G K K L E L P A V A A A L E L V D P P G C R N S A R G A S Q D A S - c V K S W S S P R W R P L * N * W I P R A A G I R H E E Q V K M P P - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d Y F A P A G R P P P R E L V L P D G P S C S N P V L L L D L H R - e T F L Q L E G R H R G S * F * H I G R A A P I R C S S C T L I G G - f P L F S S S G A T A A A R S S T S G G P Q L F E A R P A L * S A E - BssSI AflII FspI | | | CCGCGCCCACTCCAAGACCTCTCGTGTCCCCCGCCGACCCTTCGAGTCTGCCCGACTTGACTCCGAGCTTAAGCTCGTCGGCGAGTATGGCCTGCGCAAT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GGCGCGGGTGAGGTTCTGGAGAGCACAGGGGGCGGCTGGGAAGCTCAGACGGGCTGAACTGAGGCTCGAATTCGAGCAGCCGCTCATACCGGACGCGTTA a A P T P R P L V S P A D P S S L P D L T P S L S S S A S M A C A I - b P R P L Q D L S C P P P T L R V C P T * L R A * A R R R V W P A Q * - c R A H S K T S R V P R R P F E S A R L D S E L K L V G E Y G L R N - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d G A G V G L G R T D G A S G E L R G S K V G L K L E D A L I A Q A I - e R A W E L V E R T G R R G K S D A R S S E S S L S T P S Y P R R L - f G R G S W S R E H G G G V R R T Q G V Q S R A * A R R R T H G A C - EarI NspV | Tth111I AceIII BcgI BsmBI| | | | | || | AAGCGTGAGGTCTGGCGAGTCGGTCTGACTCTGTCCAAGATCCGTCGTGCTGCCCGTCAGCTCCTTACCCTCGACGAGAAGGACCCCAAGCGTCTCTTCG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TTCGCACTCCAGACCGCTCAGCCAGACTGAGACAGGTTCTAGGCAGCACGACGGGCAGTCGAGGAATGGGAGCTGCTCTTCCTGGGGTTCGCAGAGAAGC a S V R S G E S V * L C P R S V V L P V S S L P S T R R T P S V S S - b A * G L A S R S D S V Q D P S C C P S A P Y P R R E G P Q A S L R - c K R E V W R V G L T L S K I R R A A R Q L L T L D E K D P K R L F E - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d L T L D P S D T Q S Q G L D T T S G T L E K G E V L L V G L T E E - e L R S T Q R T P R V R D L I R R A A R * S R V R S S F S G L R R K - f Y A H P R A L R D S E T W S G D H Q G D A G * G R R S P G W A D R R - BsmBI AhdI | AatII| | BsrDI BcgI|| | Bce83I BpmI | ||| | | | AAGGCAATGCCCTCATTCGACGTCTCGTCCGTGTCGGTGTTCTCGACGAGTCCCGCATGAAGCTGGATTACGTCCTGGCCCTCAAGATCGAGGATTTCCT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TTCCGTTACGGGAGTAAGCTGCAGAGCAGGCACAGCCACAAGAGCTGCTCAGGGCGTACTTCGACCTAATGCAGGACCGGGAGTTCTAGCTCCTAAAGGA a K A M P S F D V S S V S V F S T S P A * S W I T S W P S R S R I S L - b R Q C P H S T S R P C R C S R R V P H E A G L R P G P Q D R G F P - c G N A L I R R L V R V G V L D E S R M K L D Y V L A L K I E D F L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d F A I G E N S T E D T D T N E V L G A H L Q I V D Q G E L D L I E - e S P L A R M R R R T R T P T R S S D R M F S S * T R A R L I S S K R - f L C H G * E V D R G H R H E R R T G C S A P N R G P G * S R P N G - Bce83I BsmBI PshAI BsaI EciI | | | | TGAGCGTCGTCTCCAGACCTGTGTCTGGAAGCTCGGTCTCGCCAAGTCTATCCACCACGCCCGTGTCCTCATCCGCCAGCGTCACATCCGAGTCGGAAAG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 ACTCGCAGCAGAGGTCTGGACACAGACCTTCGAGCCAGAGCGGTTCAGATAGGTGGTGCGGGCACAGGAGTAGGCGGTCGCAGTGTAGGCTCAGCCTTTC a S V V S R P V S G S S V S P S L S T T P V S S S A S V T S E S E S - b * A S S P D L C L E A R S R Q V Y P P R P C P H P P A S H P S R K A - c E R R L Q T C V W K L G L A K S I H H A R V L I R Q R H I R V G K - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d K L T T E L G T D P L E T E G L R D V V G T D E D A L T V D S D S L - e S R R R W V Q T Q F S P R A L D I W W A R T R M R W R * M R T P F - f Q A D D G S R H R S A R D R W T * G G R G H G * G G A D C G L R F - EagI BglI| Psp1406I BsmBI SfiI| | | || CAGATCGTCAACGTTCCTTCTTTCATCGTCCGTCTCGACTCCCAGAAGCACATCGACTTCGCTCTTACCTCGCCCTTCGGTGGTGGCCGTCCCGGCCGTG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GTCTAGCAGTTGCAAGGAAGAAAGTAGCAGGCAGAGCTGAGGGTCTTCGTGTAGCTGAAGCGAGAATGGAGCGGGAAGCCACCACCGGCAGGGCCGGCAC a R S S T F L L S S S V S T P R S T S T S L L P R P S V V A V P A V - b D R Q R S F F H R P S R L P E A H R L R S Y L A L R W W P S R P C - c Q I V N V P S F I V R L D S Q K H I D F A L T S P F G G G R P G R V - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L D D V N R R E D D T E V G L L V D V E S K G R G E T T A T G A T - e C I T L T G E K M T R R S E W F C M S K A R V E G K P P P R G P R - f A S R * R E K K * R G D R S G S A C R S R E * R A R R H H G D R G H - TCCGCAGAAAGAAGGCCAAGGCCGCCGAGGGCGGTGAGGGTGGCGAGGACNANGAGGACNAGGAGTAAATGCAACCAAAAATGCAAAAGCGGCTCTCCCT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AGGCGTCTTTCTTCCGGTTCCGGCGGCTCCCGCCACTCCCACCGCTCCTGNTNCTCCTGNTCCTCATTTACGTTGGTTTTTACGTTTTCGCCGAGAGGGA a S A E R R P R P P R A V R V A R T ? R T R S K C N Q K C K S G S P C - b P Q K E G Q G R R G R * G W R G ? ? G ? G V N A T K N A K A A L P - c R R K K A K A A E G G E G G E D ? E D ? E * M Q P K M Q K R L S L - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d D A S L L G L G G L A T L T A L V ? L V L L L H L W F H L L P E G - e T R L F F A L A A S P P S P P S S ? S S ? S Y I C G F I C F R S E R - f G C F S P W P R R P R H P H R P ? ? P ? P T F A V L F A F A A R G - DraIII EarI MscI | | | GTCTAGGGCACTTGGTGATGGGATACCACTCATGGGAAAGGGATTCTCTTCATAGCTTGCGGCGTTGGCCAGAAGATAAAAATGGAATTGATTTCACCGG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CAGATCCCGTGAACCACTACCCTATGGTGAGTACCCTTTCCCTAAGAGAAGTATCGAACGCCGCAACCGGTCTTCTATTTTTACCTTAACTAAAGTGGCC a L G H L V M G Y H S W E R D S L H S L R R W P E D K N G I D F T G - b V * G T W * W D T T H G K G I L F I A C G V G Q K I K M E L I S P D - c S R A L G D G I P L M G K G F S S * L A A L A R R * K W N * F H R - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d Q R P C K T I P Y W E H S L S E R * L K R R Q G S S L F P I S K V P - e D L A S P S P I G S M P F P N E E Y S A A N A L L Y F H F Q N * R - f T * P V Q H H S V V * P F P I R K M A Q P T P W F I F I S N I E G - BsaI | ATACGGACAACAAAAACTTTCCCGGTGGTCTCTCCTAACTGTGGATATGGAATCCCATGAAACCTGGAATCCATTACGACATCTAAAAAAAAAAAAAAAA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TATGCCTGTTGTTTTTGAAAGGGCCACCAGAGAGGATTGACACCTATACCTTAGGGTACTTTGGACCTTAGGTAATGCTGTAGATTTTTTTTTTTTTTTT a Y G Q Q K L S R W S L L T V D M E S H E T W N P L R H L K K K K K - b T D N K N F P G G L S * L W I W N P M K P G I H Y D I * K K K K K - c I R T T K T F P V V S P N C G Y G I P * N L E S I T T S K K K K K K - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d Y P C C F S E R H D R R V T S I S D W S V Q F G N R C R F F F F F - e I R V V F V K G T T E G L Q P Y P I G H F R S D M V V D L F F F F - f S V S L L F K G P P R E * S H I H F G M F G P I W * S M * F F F F F - ApaI | AAAAAAAACTTGGGGGGGGGCCCGGACCCAATTCCCCCATTAGGAGTGCGATTAAA 901 ---------+---------+---------+---------+---------+------ 956 TTTTTTTTGAACCCCCCCCCGGGCCTGGGTTAAGGGGGTAATCCTCACGCTAATTT a K K N L G G G P D P I P P L G V R L - b K K T W G G A R T Q F P H * E C D * - c K K L G G G P G P N S P I R S A I K - 901 ---------+---------+---------+---------+---------+------ 956 d F F F K P P P G S G I G G N P T R N F - e F F F S P P P G P G L E G M L L A I L - f F F V Q P P A R V W N G W * S H S * - Enzymes that do cut: AatII AceIII AflII AhdI ApaI BamHI Bce83I BcgI BglI BpmI BsaI BseRI BsmBI BsrBI BsrDI BssSI DraIII EagI EarI EciI EcoRI FspI MscI NotI NspV PshAI Psp1406I PstI SacI SacII SfiI SmaI SpeI Tth111I XbaI Enzymes that do not cut: AlwNI ApaBI ApaLI AscI AvrII BbsI BclI BfiI BglII BplI Bpu10I Bpu1102I BsaBI BsaXI BsbI BsgI BsiWI BsmI BspEI BspGI BspLU11I BspMI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DrdI DrdII Eco47III Eco57I EcoNI EcoRV FseI HgiEII HindIII HpaI KpnI MfeI MluI NarI NcoI NdeI NgoAIV NheI NruI NsiI PacI Pfl1108I PflMI PinAI PmeI PmlI PvuI PvuII RcaI RsrII SalI SanDI SapI ScaI SexAI SgfI SgrAI SnaBI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XcmI XhoI XmnI