The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1605_A02_A03ZS5.seq 1605_A02_A03ZS5 0 0 0 1 627
(514 letters)
Database: nr
705,144 sequences; 222,175,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||T16157 hypothetical protein F26A1.3 - Caenorhabditis e... 31 3.9
gb|AAC45868.1| (U50396) WbpN [Pseudomonas aeruginosa] 30 6.7
>pir||T16157 hypothetical protein F26A1.3 - Caenorhabditis elegans
gb|AAA68250.1| (U27312) Hypothetical protein F26A1.3 [Caenorhabditis elegans]
Length = 512
Score = 31.2 bits (69), Expect = 3.9
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Frame = +3
Query: 45 WISSSTPPRSTLMMTRISAKTSLNKATDSSKATVEV--NNNRAMANNK 182
WI+ TPP+++ M R K S+ K+ +S+ T + N + NK
Sbjct: 465 WITKRTPPKASAEMARSKEKGSIPKSNESASQTSDAKSKNQKKSPKNK 512
>gb|AAC45868.1| (U50396) WbpN [Pseudomonas aeruginosa]
Length = 463
Score = 30.4 bits (67), Expect = 6.7
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = -3
Query: 275 LVLGCRQEEGTAAAGHTGLPA----AVHSRPPVRN---LVVGHSPVVVDLHRSLAAVRGF 117
LV+G + AA GL A ++H RN LVV H+ VDL R+ V GF
Sbjct: 357 LVVGGDPFDRQVAARRVGLDAGLLGSLHGTQQ-RNAPLLVVVHAHAQVDLARTGIGVEGF 415
Query: 116 VETGLGAYPCHHQG 75
V+ G CH G
Sbjct: 416 VQAKDGITRCHFDG 429
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,501,407
Number of Sequences: 705144
Number of extensions: 2465820
Number of successful extensions: 7712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7705
length of database: 222,175,239
effective HSP length: 110
effective length of database: 144,609,399
effective search space used: 8676563940
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)