Score E
Sequences producing significant alignments: (bits) Value
emb|CAC27452.1| (AJ297887) DigA protein [Aspergillus nidulans] 105 1e-27
dbj|BAA95999.1| (AB040908) KIAA1475 protein [Homo sapiens] 61 2e-09
gb|AAG34679.1|AF308802_1 (AF308802) vacuolar protein sortin... 61 2e-09
pir||T41607 probable vacuolar membrane protein - fission ye... 57 2e-08
ref|NP_013249.1| vacuolar membrane protein; Pep3p [Saccharo... 51 2e-06
gb|AAF88074.1|AC025417_2 (AC025417) T12C24.2 [Arabidopsis t... 49 6e-06
gb|AAF79641.1|AC025416_15 (AC025416) F5O11.22 [Arabidopsis ... 49 6e-06
gb|AAF45652.1| (AE003421) dor gene product [Drosophila mela... 45 1e-04
pir||S54252 deep orange protein - fruit fly (Drosophila mel... 45 1e-04
emb|CAB91628.1| (AJ289080) Vps18 protein [Candida albicans] 45 2e-04
sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN >gi|2832850|emb|CAA... 44 3e-04
pir||T34481 hypothetical protein W06B4.3 - Caenorhabditis e... 42 0.001
gb|AAC46819.2| (U23522) similar to vacuolar membrane protei... 42 0.001
dbj|BAB08428.1| (AB017067) gb|AAF32311.1~gene_id:MJC20.5~si... 35 0.13
emb|CAB89426.1| (AL109839) dJ1069P2.3.4 (novel PABPC1 (poly... 34 0.22
emb|CAB95611.1| (AL359782) hypothetical protein, CHR1.386 [... 34 0.22
emb|CAB89425.1| (AL109839) dJ1069P2.3.3 (novel PABPC1 (poly... 34 0.22
emb|CAB89424.1| (AL109839) dJ1069P2.3.2 (novel PABPC1 (poly... 34 0.22
emb|CAB89423.1| (AL109839) dJ1069P2.3.1 (novel PABPC1 (poly... 34 0.22
gb|AAF54693.1| (AE003692) CG6923 gene product [Drosophila m... 33 0.37
sp|Q06316|BLAC_NOCLA BETA-LACTAMASE PRECURSOR (PENICILLINAS... 33 0.48
pir||S22750 beta-lactamase (EC 3.5.2.6) - Streptomyces lact... 33 0.48
dbj|BAB22082.1| (AK002414) putative [Mus musculus] 32 0.82
ref|NP_055463.1| KIAA0675 gene product [Homo sapiens] >gi|7... 32 1.4
sp|Q10322|DMA1_SCHPO DMA1 PROTEIN >gi|7490447|pir||T37862 d... 32 1.4
gb|AAG51882.1|AC016162_3 (AC016162) c-Jun coactivator-like ... 31 1.8
gb|AAC36343.1| (AF087412) AJH2 [Arabidopsis thaliana] 31 1.8
gb|AAK40566.1| (AE006659) DNA-directed RNA polymerase, subu... 31 1.8
gb|AAH01657.1|AAH01657 (BC001657) Unknown (protein for IMAG... 31 2.4
gb|AAK38349.1| (AY030283) PHD zinc finger transcription fac... 31 2.4
ref|NP_077301.1| hypothetical protein MGC10715 [Homo sapien... 31 2.4
gb|AAD22654.1|AC007138_18 (AC007138) putative CHP-rich zinc... 30 3.1
gb|AAF58107.2| (AE003809) CG8242 gene product [Drosophila m... 30 4.1
pir||T37635 hypothetical protein SPAC13F5.10 - fission yeas... 30 4.1
emb|CAB86414.1| (AL163191) hypothetical protein [Schizosacc... 30 4.1
pir||T00600 hypothetical protein T8K22.6 - Arabidopsis thal... 30 4.1
pir||T00603 hypothetical protein T8K22.9 - Arabidopsis thal... 30 4.1
sp|P54583|GUN1_ACICE ENDOGLUCANASE E1 PRECURSOR (ENDO-1,4-B... 30 4.1
emb|CAA06670.1| (AJ005685) thr4 [Tenebrio molitor] 30 4.1
pir||T03962 r40g3 protein - rice >gi|1658315|emb|CAA70175.1... 30 4.1
pir||T03835 vacA protein - slime mold (Dictyostelium discoi... 30 5.3
gb|AAF47902.1| (AE003481) CG15021 gene product [Drosophila ... 30 5.3
pir||A33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain ... 30 5.3
sp|P15350|RPA1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT A'... 30 5.3
gb|AAD20403.1| (AC007019) unknown protein [Arabidopsis thal... 29 6.9
dbj|BAB01306.1| (AB025631) gene_id:MPN9.16~unknown protein ... 29 6.9
prf||1713471A extensin [Brassica napus] 29 6.9
ref|NP_073618.1| hypothetical protein FLJ21343 [Homo sapien... 29 6.9
gb|AAF40442.1|AF239615_1 (AF239615) CRANTZ hydroxyproline-r... 29 6.9
gb|AAC64304.1| (AC004450) putative extensin [Arabidopsis th... 29 6.9
pir||T41259 hypothetical protein SPCC285.13c - fission yeas... 29 6.9
pir||T38478 RhoGAP/LIM domain protein - fission yeast (Sch... 29 9.1
gb|AAG43279.1|AF135593_1 (AF135593) hVps41p [Homo sapiens] 29 9.1
ref|NP_055211.1| vacuolar protein sorting 41 (yeast homolog... 29 9.1
ref|XP_004830.3| vacuolar protein sorting 41 (yeast homolog... 29 9.1
pir||T45654 zinc-finger-like protein - Arabidopsis thaliana... 29 9.1
pir||S50755 hypothetical protein VSP-3 - Chlamydomonas rein... 29 9.1
ref|NP_111000.1| Uncharacterized conserved protein [Thermop... 29 9.1
pir||B33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain ... 29 9.1
sp|P11512|RPA1_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT A'... 29 9.1
pir||JQ1663 hybrid proline-rich protein - maize >gi|433707|... 29 9.1
gb|AAD15547.1| (AC004850) vacuolar assembly protein VPS41 h... 29 9.1
emb|CAB90157.1| (AL355013) putative vacuolar biogenesis pro... 29 9.1
>emb|CAC27452.1| (AJ297887) DigA protein [Aspergillus nidulans]
Length = 963
Score = 105 bits (263), Expect(2) = 1e-27
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = +1
Query: 16 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAG 195
TA I+ +IAALD RYAIVEPGEKC+TC LP+LSRQFFVFPCQH+FHSDCLGR+VLE AG
Sbjct: 839 TARQIRSEIAALDTRYAIVEPGEKCWTCSLPVLSRQFFVFPCQHAFHSDCLGREVLEGAG 898
Score = 36.6 bits (83), Expect(2) = 1e-27
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2
Query: 215 IRELQMQIQKGLVSGTQRETVVAELDALVASS 310
IR+LQ Q+ +G ++ +QRE VV ELD L+A +
Sbjct: 904 IRDLQSQLNEGALTSSQREEVVKELDGLIAEA 935
>dbj|BAA95999.1| (AB040908) KIAA1475 protein [Homo sapiens]
Length = 986
Score = 61.2 bits (147), Expect = 2e-09
Identities = 35/95 (36%), Positives = 49/95 (50%), Gaps = 6/95 (6%)
Frame = +1
Query: 16 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL------GRK 177
+A I+ D+ L RY VEP +KC TC PLL+R F++F C H FH+DCL G
Sbjct: 842 SAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLP 901
Query: 178 VLEQAGVGGVIAYQGTSNADTEGPGQWYAEGDGCGRTGRSR 300
+QA + + G + +G + G G SR
Sbjct: 902 AYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSR 942
>gb|AAG34679.1|AF308802_1 (AF308802) vacuolar protein sorting protein 18 [Homo sapiens]
Length = 973
Score = 61.2 bits (147), Expect = 2e-09
Identities = 35/95 (36%), Positives = 49/95 (50%), Gaps = 6/95 (6%)
Frame = +1
Query: 16 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL------GRK 177
+A I+ D+ L RY VEP +KC TC PLL+R F++F C H FH+DCL G
Sbjct: 829 SAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLP 888
Query: 178 VLEQAGVGGVIAYQGTSNADTEGPGQWYAEGDGCGRTGRSR 300
+QA + + G + +G + G G SR
Sbjct: 889 AYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSR 929
>pir||T41607 probable vacuolar membrane protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA21292.1| (AL031855) putative vacuolar membrane protein [Schizosaccharomyces
pombe]
Length = 900
Score = 57.4 bits (137), Expect = 2e-08
Identities = 23/64 (35%), Positives = 36/64 (55%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGV 198
A I+ + + +RY ++EP E C+ C PL S F +FPCQH+FH C+ K + A
Sbjct: 814 AHEIQTNAENMRNRYIVLEPNESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEKTYKLASE 873
Query: 199 GGVI 210
++
Sbjct: 874 KNIL 877
>ref|NP_013249.1| vacuolar membrane protein; Pep3p [Saccharomyces cerevisiae]
sp|P27801|PEP3_YEAST VACUOLAR MEMBRANE PROTEIN PEP3
pir||A41943 vacuolar membrane protein PEP3 - yeast (Saccharomyces cerevisiae)
gb|AAA34852.1| (M65144) PEP3 [Saccharomyces cerevisiae]
gb|AAB82382.1| (U53879) Pep3p: Vacuolar membrane protein [Saccharomyces
cerevisiae]
emb|CAA97720.1| (Z73320) ORF YLR148w [Saccharomyces cerevisiae]
Length = 918
Score = 51.2 bits (121), Expect = 2e-06
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +1
Query: 28 IKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVL 183
I +I+ + Y I+EPG+ C CG L ++F VFPC H FH +C+ R +L
Sbjct: 806 INTEISKFNEIYRILEPGKSCDECGKFLQIKKFIVFPCGHCFHWNCIIRVIL 857
>gb|AAF88074.1|AC025417_2 (AC025417) T12C24.2 [Arabidopsis thaliana]
Length = 1010
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 17/50 (34%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQ-----------------FFVFPCQH 147
A NI+ DI+AL RYA+++ E+C C +L F+VFPC H
Sbjct: 835 ADNIRNDISALTQRYAVIDRDEECGVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGH 894
Query: 148 SFHSDCL 168
SFH+ CL
Sbjct: 895 SFHAQCL 901
>gb|AAF79641.1|AC025416_15 (AC025416) F5O11.22 [Arabidopsis thaliana]
Length = 1063
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 17/50 (34%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQ-----------------FFVFPCQH 147
A NI+ DI+AL RYA+++ E+C C +L F+VFPC H
Sbjct: 888 ADNIRNDISALTQRYAVIDRDEECGVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGH 947
Query: 148 SFHSDCL 168
SFH+ CL
Sbjct: 948 SFHAQCL 954
>gb|AAF45652.1| (AE003421) dor gene product [Drosophila melanogaster]
Length = 1002
Score = 45.1 bits (105), Expect = 1e-04
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 7 TRPTATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVL- 183
T + ++ L VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 858 TTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVP 917
Query: 184 ----EQAGVGGVIAYQGTSNADTEGPGQ 255
EQ G + Q + T+ Q
Sbjct: 918 LLTKEQCRRLGTLKQQLEAEVQTQAQPQ 945
>pir||S54252 deep orange protein - fruit fly (Drosophila melanogaster)
emb|CAA60382.1| (X86683) deep orange (dor) [Drosophila melanogaster]
Length = 1002
Score = 45.1 bits (105), Expect = 1e-04
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 7 TRPTATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVL- 183
T + ++ L VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 858 TTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVP 917
Query: 184 ----EQAGVGGVIAYQGTSNADTEGPGQ 255
EQ G + Q + T+ Q
Sbjct: 918 LLTKEQCRRLGTLKQQLEAEVQTQAQPQ 945
>emb|CAB91628.1| (AJ289080) Vps18 protein [Candida albicans]
Length = 810
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 64 AIVEPGEKCYTCGLPLLSRQFFVFP-CQHSFHSDCL 168
AI+EPGE C CG L+ F FP C H+FH +C+
Sbjct: 761 AIIEPGEPCRKCGKLLVQENFVYFPNCHHAFHKECM 796
>sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN
emb|CAA16809.1| (AL021726) EG:171E4.1 [Drosophila melanogaster]
Length = 1002
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/62 (38%), Positives = 33/62 (52%), Gaps = 5/62 (8%)
Frame = +1
Query: 70 VEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVL-----EQAGVGGVIAYQGTSNA 234
VE + C C + LL + FF+F C H FHSDCL + V+ EQ G + Q +
Sbjct: 879 VESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVPLLTKEQCRRLGTLKQQLEAEV 938
Query: 235 DTEGPGQ 255
T+ Q
Sbjct: 939 QTQAQPQ 945
>pir||T34481 hypothetical protein W06B4.3 - Caenorhabditis elegans
Length = 543
Score = 41.6 bits (96), Expect = 0.001
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL 168
A+ I+ L +R +V+P + C C P+ R F V C+H FH +CL
Sbjct: 400 ASEIRDKQEKLKNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECL 449
>gb|AAC46819.2| (U23522) similar to vacuolar membrane protein PEP3 (SP:PEP3_YEAST,
P27801) [Caenorhabditis elegans]
Length = 1010
Score = 41.6 bits (96), Expect = 0.001
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL 168
A+ I+ L +R +V+P + C C P+ R F V C+H FH +CL
Sbjct: 867 ASEIRDKQEKLKNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECL 916
>dbj|BAB08428.1| (AB017067) gb|AAF32311.1~gene_id:MJC20.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 565
Score = 35.0 bits (79), Expect = 0.13
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = -2
Query: 201 SHARLLQYLSPQAIRVERVLTGKNKELSTQ*GQSTSITLLTRLHDCVAMVECSNINLDVG 22
+H RLLQ L P+ + R L+GK + +ST + T +T + V++ C+++ L G
Sbjct: 459 NHERLLQVLKPEPREMGRNLSGKAETMSTNVERKTVKVNITEI---VSVTPCADLTLPPG 515
Query: 21 SG 16
+G
Sbjct: 516 AG 517
>emb|CAB89426.1| (AL109839) dJ1069P2.3.4 (novel PABPC1 (poly(A)-binding protein,
cytoplasmic 1) (PABPL1) like protein (putative isoform
4)) [Homo sapiens]
Length = 328
Score = 34.3 bits (77), Expect = 0.22
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 290 PVLPQP-SPSAYH*PGPSVSAFEVP*YAMTPPTPACSSTFRP 168
P +PQP + +AY+ GP P + PP P+C+S RP
Sbjct: 117 PAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRP 158
>emb|CAB95611.1| (AL359782) hypothetical protein, CHR1.386 [Trypanosoma brucei]
Length = 731
Score = 34.3 bits (77), Expect = 0.22
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 7/53 (13%)
Frame = +1
Query: 10 RPTATNIKVDIA----ALDHRYAIVEPGEKC-YTCGLPL--LSRQFFVFPCQHSFHSDCL 168
RP A I+VD+ HR + E +C ++CGL + L PC H+F +CL
Sbjct: 578 RPVAQEIRVDVKNSLLTAMHRLIVAEEATECIFSCGLCMQPLKSPLTCVPCGHTFCEECL 637
>emb|CAB89425.1| (AL109839) dJ1069P2.3.3 (novel PABPC1 (poly(A)-binding protein,
cytoplasmic 1) (PABPL1) like protein (putative isoform
3)) [Homo sapiens]
Length = 347
Score = 34.3 bits (77), Expect = 0.22
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 290 PVLPQP-SPSAYH*PGPSVSAFEVP*YAMTPPTPACSSTFRP 168
P +PQP + +AY+ GP P + PP P+C+S RP
Sbjct: 117 PAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRP 158
>emb|CAB89424.1| (AL109839) dJ1069P2.3.2 (novel PABPC1 (poly(A)-binding protein,
cytoplasmic 1) (PABPL1) like protein (putative isoform
2)) [Homo sapiens]
Length = 325
Score = 34.3 bits (77), Expect = 0.22
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 290 PVLPQP-SPSAYH*PGPSVSAFEVP*YAMTPPTPACSSTFRP 168
P +PQP + +AY+ GP P + PP P+C+S RP
Sbjct: 117 PAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRP 158
>emb|CAB89423.1| (AL109839) dJ1069P2.3.1 (novel PABPC1 (poly(A)-binding protein,
cytoplasmic 1) (PABPL1) like protein (putative isoform
1)) [Homo sapiens]
Length = 322
Score = 34.3 bits (77), Expect = 0.22
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 290 PVLPQP-SPSAYH*PGPSVSAFEVP*YAMTPPTPACSSTFRP 168
P +PQP + +AY+ GP P + PP P+C+S RP
Sbjct: 117 PAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRP 158
>gb|AAF54693.1| (AE003692) CG6923 gene product [Drosophila melanogaster]
Length = 1256
Score = 33.5 bits (75), Expect = 0.37
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Frame = +1
Query: 4 PTRPT--ATNIKVDIAALDHRYAIV-------EPGEKCYTC-GLPLLSRQFFVFPCQHSF 153
P+RP AT ++ L H+Y V E EKC C L + + PC H F
Sbjct: 1150 PSRPNRGATLETIERNTLPHKYRRVRRPSETDEDAEKCAICLNLFEIENEVRRLPCMHLF 1209
Query: 154 HSDCL 168
H+DC+
Sbjct: 1210 HTDCV 1214
>sp|Q06316|BLAC_NOCLA BETA-LACTAMASE PRECURSOR (PENICILLINASE)
pir||S36188 beta-lactamase (EC 3.5.2.6) I precursor - Streptomyces lactamdurans
emb|CAA78373.1| (Z13971) cmcBla [Streptomyces lactamdurans]
Length = 302
Score = 33.1 bits (74), Expect = 0.48
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 299 RERPVLPQPSPSAYH*PGPSVSAFEV-P*YAMTPPTPACSSTFRPKQSEWN 150
R RP P+P+P P PS +A V P A TPP PA F Q++++
Sbjct: 12 RARPAAPEPAP-----PTPSAAAPSVAPGPAATPPDPAVEQEFTRLQTQYD 57
>pir||S22750 beta-lactamase (EC 3.5.2.6) - Streptomyces lactamdurans (fragment)
Length = 302
Score = 33.1 bits (74), Expect = 0.48
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 299 RERPVLPQPSPSAYH*PGPSVSAFEV-P*YAMTPPTPACSSTFRPKQSEWN 150
R RP P+P+P P PS +A V P A TPP PA F Q++++
Sbjct: 12 RARPAAPEPAP-----PTPSAAAPSVAPGPAATPPDPAVEQEFTRLQTQYD 57
>dbj|BAB22082.1| (AK002414) putative [Mus musculus]
Length = 379
Score = 32.3 bits (72), Expect = 0.82
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 61 YAIVEPG-EKCYTCGLPLLSRQFF-VFPCQHSFHSDCL 168
+++ EPG E C C ++Q+ V PC+H FH DC+
Sbjct: 317 HSLPEPGTETCAVCLDYFCNKQWLRVLPCKHEFHRDCV 354
>ref|NP_055463.1| KIAA0675 gene product [Homo sapiens]
pir||T00362 hypothetical protein KIAA0675 - human
dbj|BAA31650.1| (AB014575) KIAA0675 protein [Homo sapiens]
Length = 1208
Score = 31.6 bits (70), Expect = 1.4
Identities = 13/39 (33%), Positives = 18/39 (45%)
Frame = +1
Query: 73 EPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQ 189
E E C C L V PC H FH+ C+ +++Q
Sbjct: 1143 EEEEPCVICHENLSPENLSVLPCAHKFHAQCIRPWLMQQ 1181
>sp|Q10322|DMA1_SCHPO DMA1 PROTEIN
pir||T37862 dma1 protein - fission yeast (Schizosaccharomyces pombe)
emb|CAA93693.1| (Z69795) dma1 protein. [Schizosaccharomyces pombe]
emb|CAA57466.1| (X81883) non-essential gene [Schizosaccharomyces pombe]
Length = 267
Score = 31.6 bits (70), Expect = 1.4
Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Frame = +1
Query: 85 KCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 168
+C C +P+L Q FV PC HS+H C+
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCI 219
>gb|AAG51882.1|AC016162_3 (AC016162) c-Jun coactivator-like protein (AJH2); 90304-88609
[Arabidopsis thaliana]
Length = 358
Score = 31.2 bits (69), Expect = 1.8
Identities = 16/51 (31%), Positives = 25/51 (48%)
Frame = +2
Query: 50 STIATQSWSLVRSVILVDCPY*VDSSLFFPVSTRSTLIAWGERYWSRRAWE 202
STIA ++W L S++ VD P ++F+ T T R+ + WE
Sbjct: 6 STIARKTWELENSILTVDSPDSTSDNIFYYDDTSQT------RFQQEKPWE 50
>gb|AAC36343.1| (AF087412) AJH2 [Arabidopsis thaliana]
Length = 358
Score = 31.2 bits (69), Expect = 1.8
Identities = 16/51 (31%), Positives = 25/51 (48%)
Frame = +2
Query: 50 STIATQSWSLVRSVILVDCPY*VDSSLFFPVSTRSTLIAWGERYWSRRAWE 202
STIA ++W L S++ VD P ++F+ T T R+ + WE
Sbjct: 6 STIARKTWELENSILTVDSPDSTSDNIFYYDDTSQT------RFQQEKPWE 50
>gb|AAK40566.1| (AE006659) DNA-directed RNA polymerase, subunit A' (rpoA1)
[Sulfolobus solfataricus]
Length = 880
Score = 31.2 bits (69), Expect = 1.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
++ + +D R ++EPG+KC TCG
Sbjct: 40 IEGSVMDPRLGVIEPGQKCPTCG 62
>gb|AAH01657.1|AAH01657 (BC001657) Unknown (protein for IMAGE:3356959) [Homo sapiens]
Length = 487
Score = 30.8 bits (68), Expect = 2.4
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 5/56 (8%)
Frame = +1
Query: 1 RPTRPTATNIKVDIAALDHRYAIVEPGEKCYTCG-----LPLLSRQFFVFPCQHSFHSDC 165
R T N+K LDH + P + C+TC PL+ + C FH DC
Sbjct: 160 RKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDY----CPLLFHMDC 215
Query: 166 L 168
L
Sbjct: 216 L 216
>gb|AAK38349.1| (AY030283) PHD zinc finger transcription factor [Homo sapiens]
Length = 704
Score = 30.8 bits (68), Expect = 2.4
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 5/56 (8%)
Frame = +1
Query: 1 RPTRPTATNIKVDIAALDHRYAIVEPGEKCYTCG-----LPLLSRQFFVFPCQHSFHSDC 165
R T N+K LDH + P + C+TC PL+ + C FH DC
Sbjct: 245 RKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDY----CPLLFHMDC 300
Query: 166 L 168
L
Sbjct: 301 L 301
>ref|NP_077301.1| hypothetical protein MGC10715 [Homo sapiens]
ref|XP_016258.1| hypothetical protein MGC10715 [Homo sapiens]
gb|AAH02897.1|AAH02897 (BC002897) Unknown (protein for MGC:10715) [Homo sapiens]
emb|CAB46713.2| (AL049650) dJ734P14.1 (novel KRAB box protein) [Homo sapiens]
Length = 118
Score = 30.8 bits (68), Expect = 2.4
Identities = 17/63 (26%), Positives = 36/63 (56%), Gaps = 3/63 (4%)
Frame = +2
Query: 101 DCPY*VD--SSLFFPVSTRSTLIAWGERYWSRRAWEESSRIRELQMQIQKGLVS-GTQRE 271
DCP + + + PV+ R + + E W R + E+ + +E+ ++ + L+S G + E
Sbjct: 47 DCPQKKEGKAQIVVPVTFRDVTVIFTEAEWKRLSPEQRNLYKEVMLENYRNLLSLGQEIE 106
Query: 272 TVVAEL 289
T++A +
Sbjct: 107 TILANI 112
>gb|AAD22654.1|AC007138_18 (AC007138) putative CHP-rich zinc finger protein [Arabidopsis
thaliana]
emb|CAB80685.1| (AL161493) putative CHP-rich zinc finger protein [Arabidopsis
thaliana]
Length = 658
Score = 30.4 bits (67), Expect = 3.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 1 RPTRPTATNIKVDIAALDHRYAIVEPGEK--CYTCGLPLLSRQFFVFPCQHSFHSDCLG 171
RP + + N+K A DH+ ++ + C CGL + F C H DCLG
Sbjct: 233 RPPQQSLLNLK----AHDHQLTLLPKLDSFTCNACGLKGDRSPYVCFQCGFMIHQDCLG 287
>gb|AAF58107.2| (AE003809) CG8242 gene product [Drosophila melanogaster]
Length = 422
Score = 30.0 bits (66), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 85 KCYTCGLPLLSRQFFVFPCQHSFHSDC 165
KC+ CG P+ + +V H++HS C
Sbjct: 367 KCFACGFPVEAGDRWVEALNHNYHSQC 393
>pir||T37635 hypothetical protein SPAC13F5.10 - fission yeast
(Schizosaccharomyces pombe)
Length = 393
Score = 30.0 bits (66), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 173 ERYWSRRAWEESSRIRELQMQIQKGLVSGTQRE 271
+RY SRR W + +RIR M + G VS Q++
Sbjct: 73 QRYRSRRKWSDPTRIRLFTMYLDLGGVSTGQKQ 105
>emb|CAB86414.1| (AL163191) hypothetical protein [Schizosaccharomyces pombe]
Length = 399
Score = 30.0 bits (66), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 173 ERYWSRRAWEESSRIRELQMQIQKGLVSGTQRE 271
+RY SRR W + +RIR M + G VS Q++
Sbjct: 79 QRYRSRRKWSDPTRIRLFTMYLDLGGVSTGQKQ 111
>pir||T00600 hypothetical protein T8K22.6 - Arabidopsis thaliana
gb|AAC18923.1| (AC004136) hypothetical protein [Arabidopsis thaliana]
Length = 627
Score = 30.0 bits (66), Expect = 4.1
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 73 EPGEKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 168
E G++CY+C + + +F C FH +C+
Sbjct: 114 EEGDECYSCSIQTIGTDYYFCATCDKRFHKECV 146
>pir||T00603 hypothetical protein T8K22.9 - Arabidopsis thaliana
gb|AAC18926.1| (AC004136) hypothetical protein [Arabidopsis thaliana]
Length = 627
Score = 30.0 bits (66), Expect = 4.1
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 73 EPGEKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 168
E G++CY+C + + +F C FH +C+
Sbjct: 114 EEGDECYSCSIQTIGTDYYFCATCDKRFHKECV 146
>sp|P54583|GUN1_ACICE ENDOGLUCANASE E1 PRECURSOR (ENDO-1,4-BETA-GLUCANASE E1) (CELLULASE
E1) (ENDOCELLULASE E1)
gb|AAA75477.1| (U33212) E I beta-1,4-endoglucanase precursor [Acidothermus
cellulolyticus]
Length = 562
Score = 30.0 bits (66), Expect = 4.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 281 PQPSPSAYH*PGPSVSAFEVP*YAMTP---PTPACSSTFRPKQSEWNEC 144
P PSPSA P P+ + P +TP PTP S T P + C
Sbjct: 417 PSPSPSASRTPTPTPTPTASPTPTLTPTATPTPTASPTPSPTAASGARC 465
Score = 29.3 bits (64), Expect = 6.9
Identities = 18/37 (48%), Positives = 19/37 (50%), Gaps = 3/37 (8%)
Frame = -3
Query: 278 QPSPSAYH*PGPSVSAFEVP*YAMTP---PTPACSSTFRP 168
QPSPS P PS SA P TP PTP + T P
Sbjct: 408 QPSPSVSPSPSPSPSASRTPTPTPTPTASPTPTLTPTATP 447
>emb|CAA06670.1| (AJ005685) thr4 [Tenebrio molitor]
Length = 810
Score = 30.0 bits (66), Expect = 4.1
Identities = 22/82 (26%), Positives = 37/82 (44%)
Frame = +2
Query: 14 RPLPTSRLILLHSTIATQSWSLVRSVILVDCPY*VDSSLFFPVSTRSTLIAWGERYWSRR 193
RP TS +I+ + TIA + S + +V C SS +R +I+ +
Sbjct: 134 RPANTSPVIIHNPTIAQPTSSRAKLSTMVTCQEPTSSSPSAVSKSRGVIISHPTSLTQSQ 193
Query: 194 AWEESSRIRELQMQIQKGLVSG 259
W + SRI ++ ++ G SG
Sbjct: 194 LWMKHSRINGVKPELIGGNFSG 215
>pir||T03962 r40g3 protein - rice
emb|CAA70175.1| (Y08988) osr40g3 [Oryza sativa]
Length = 204
Score = 30.0 bits (66), Expect = 4.1
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = +1
Query: 193 GVGGVIAYQGTSNADTEGPGQWYAEGDGCGRT 288
G GG +A G + A G Q EG+GCGRT
Sbjct: 17 GGGGALATPGYAPAAPYGMSQVNIEGNGCGRT 48
>pir||T03835 vacA protein - slime mold (Dictyostelium discoideum) (fragment)
gb|AAB69389.1| (AF015565) VacA [Dictyostelium discoideum]
Length = 708
Score = 29.6 bits (65), Expect = 5.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 130 VFPCQHSFHSDCLGR 174
V+ C H+FHS+CLG+
Sbjct: 558 VYQCNHTFHSECLGK 572
>gb|AAF47902.1| (AE003481) CG15021 gene product [Drosophila melanogaster]
Length = 446
Score = 29.6 bits (65), Expect = 5.3
Identities = 16/48 (33%), Positives = 24/48 (49%), Gaps = 9/48 (18%)
Frame = -3
Query: 308 KTQRERPVLPQPSPSAYH*PGPSVS---------AFEVP*YAMTPPTPACSSTFRPK 165
+ Q RP P+P P + + P P + VP Y PP P T++P+
Sbjct: 285 RPQPPRPQPPRPQPGSEYLPPPGENEVTPTQPQPTAPVPEYGPPPPAPPAGPTYQPR 341
>pir||A33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain A - Halobacterium
salinarum
Length = 972
Score = 29.6 bits (65), Expect = 5.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
+D+ +D R +++PG +C TCG
Sbjct: 44 IDMGLMDPRLGVIDPGLECKTCG 66
>sp|P15350|RPA1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT A'
emb|CAA40426.1| (X57144) RNA polymerase subunit A [Halobacterium salinarum]
Length = 971
Score = 29.6 bits (65), Expect = 5.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
+D+ +D R +++PG +C TCG
Sbjct: 44 IDMGLMDPRLGVIDPGLECKTCG 66
>gb|AAD20403.1| (AC007019) unknown protein [Arabidopsis thaliana]
Length = 746
Score = 29.3 bits (64), Expect = 6.9
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Frame = +1
Query: 49 LDHRYAI-VEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL 168
+DH AI ++ G KC C L + + C+ +FH +C+
Sbjct: 578 VDHMLAISLKSGSKCTACQLNITKYGYHCTICEINFHIECI 618
>dbj|BAB01306.1| (AB025631) gene_id:MPN9.16~unknown protein [Arabidopsis thaliana]
Length = 340
Score = 29.3 bits (64), Expect = 6.9
Identities = 11/29 (37%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Frame = +1
Query: 82 EKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 168
E C C L + + PC+HS+HS+C+
Sbjct: 286 ESCVICRLDYEDDEDLILLPCKHSYHSECI 315
>prf||1713471A extensin [Brassica napus]
Length = 392
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACSS 180
PV P P YH P P V + P Y +PP P S+
Sbjct: 241 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPMKSA 277
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 225 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 260
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 65 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 100
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 145 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 180
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 97 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVQS 132
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 161 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 196
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 113 PVKSPPPPYYYHSPPPPVQSPPPPYYYHSPPPPVKS 148
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 81 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 116
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 129 PVQSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 164
Score = 28.9 bits (63), Expect = 9.1
Identities = 14/36 (38%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P + + P Y +PP P S
Sbjct: 257 PVKSPPPPYYYHSPPPPMKSAPPPYYYNSPPPPVKS 292
Score = 28.9 bits (63), Expect = 9.1
Identities = 14/36 (38%), Positives = 18/36 (49%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
P+ P+P YH P P V + P Y +PP P S
Sbjct: 209 PMKSPPAPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 244
Score = 28.9 bits (63), Expect = 9.1
Identities = 14/36 (38%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P + + P Y +PP P S
Sbjct: 193 PVKSPPPPYYYHSPPPPMKSPPAPYYYHSPPPPVKS 228
Score = 28.9 bits (63), Expect = 9.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTP 192
PV P P YH P P V + P Y +PP P
Sbjct: 177 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPP 209
>ref|NP_073618.1| hypothetical protein FLJ21343 [Homo sapiens]
ref|XP_017882.1| hypothetical protein FLJ21343 [Homo sapiens]
dbj|BAB15050.1| (AK024996) unnamed protein product [Homo sapiens]
Length = 332
Score = 29.3 bits (64), Expect = 6.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 88 CYTCGLPLLSRQFF-VFPCQHSFHSDCLGR 174
C C SRQ V PC H FH+ C+ +
Sbjct: 280 CVVCMCDFESRQLLRVLPCNHEFHAKCVDK 309
>gb|AAF40442.1|AF239615_1 (AF239615) CRANTZ hydroxyproline-rich glycoprotein [Manihot
esculenta]
Length = 232
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 74 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 109
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 90 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 125
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 106 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 141
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 122 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 157
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 138 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 173
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 154 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 189
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 170 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 205
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 186 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 221
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 58 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 93
>gb|AAC64304.1| (AC004450) putative extensin [Arabidopsis thaliana]
Length = 212
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 112 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 147
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 128 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 163
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 144 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 179
Score = 29.3 bits (64), Expect = 6.9
Identities = 15/36 (41%), Positives = 17/36 (46%)
Frame = -3
Query: 290 PVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACS 183
PV P P YH P P V + P Y +PP P S
Sbjct: 96 PVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKS 131
>pir||T41259 hypothetical protein SPCC285.13c - fission yeast
(Schizosaccharomyces pombe)
emb|CAA20852.1| (AL031545) hypothetical protein [Schizosaccharomyces pombe]
Length = 736
Score = 29.3 bits (64), Expect = 6.9
Identities = 20/43 (46%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Frame = -3
Query: 302 QRERPVLPQPSPSAY-H*PGPSVSA---FEVP*YAMTPPTPACSSTF 174
+ + PV +PSA P P VS+ F P A T P+PA SSTF
Sbjct: 444 ENKTPVFSFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTF 490
>pir||T38478 RhoGAP/LIM domain protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAB10138.1| (Z97210) RhoGAP/LIM domain protein [Schizosaccharomyces pombe]
Length = 969
Score = 28.9 bits (63), Expect = 9.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 55 HRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLE 186
H AI +P +CY C + + F C S HS CL R E
Sbjct: 701 HVNAIFKPS-RCYICSESVWGSELRCFHCSISCHSRCLKRLFAE 743
>gb|AAG43279.1|AF135593_1 (AF135593) hVps41p [Homo sapiens]
Length = 779
Score = 28.9 bits (63), Expect = 9.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +1
Query: 67 IVEPGEKCYTCGLPLLSRQ------FFVFPCQHSFHSDCLGRKVLEQAGVGGVIAYQGTS 228
+V+ C +C P+L VF C+H FH +CL + A +
Sbjct: 709 LVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAA-----QFCNIC 763
Query: 229 NADTEGPG 252
+A GPG
Sbjct: 764 SAKNRGPG 771
>ref|NP_055211.1| vacuolar protein sorting 41 (yeast homolog); vacuolar assembly
protein 41 [Homo sapiens]
sp|P49754|VP41_HUMAN VACUOLAR ASSEMBLY PROTEIN VPS41 HOMOLOG (S53)
gb|AAB47563.1| (U87309) hVps41p [Homo sapiens]
Length = 854
Score = 28.9 bits (63), Expect = 9.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +1
Query: 67 IVEPGEKCYTCGLPLLSRQ------FFVFPCQHSFHSDCLGRKVLEQAGVGGVIAYQGTS 228
+V+ C +C P+L VF C+H FH +CL + A +
Sbjct: 784 LVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAA-----QFCNIC 838
Query: 229 NADTEGPG 252
+A GPG
Sbjct: 839 SAKNRGPG 846
>ref|XP_004830.3| vacuolar protein sorting 41 (yeast homolog) [Homo sapiens]
Length = 854
Score = 28.9 bits (63), Expect = 9.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +1
Query: 67 IVEPGEKCYTCGLPLLSRQ------FFVFPCQHSFHSDCLGRKVLEQAGVGGVIAYQGTS 228
+V+ C +C P+L VF C+H FH +CL + A +
Sbjct: 784 LVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAA-----QFCNIC 838
Query: 229 NADTEGPG 252
+A GPG
Sbjct: 839 SAKNRGPG 846
>pir||T45654 zinc-finger-like protein - Arabidopsis thaliana
emb|CAB61964.1| (AL133292) zinc-finger-like protein [Arabidopsis thaliana]
Length = 210
Score = 28.9 bits (63), Expect = 9.1
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 82 EKCYTCGLPLLSRQFFVF--PCQHSFHSDCL 168
++C C + R+ V PC H +HS+C+
Sbjct: 160 DRCVVCQMEFEERESLVVLRPCDHPYHSECI 190
>pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii
gb|AAB53953.1| (L29029) amino acid feature: Rod protein domain, aa 266 .. 468;
amino acid feature: globular protein domain, aa 32 ..
265 [Chlamydomonas reinhardtii]
Length = 473
Score = 28.9 bits (63), Expect = 9.1
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -3
Query: 299 RERPVLPQPSPSAYH*PGPSVSAFEVP*YAMTPPTPACSSTFRPKQS 159
R P LP PSPS P PS S P P+P+ S + PK S
Sbjct: 360 RPSPPLPSPSPSPSPSPSPSPSPSPKP-----SPSPSPSPSPSPKPS 401
>ref|NP_111000.1| Uncharacterized conserved protein [Thermoplasma volcanium]
dbj|BAB59622.1| (AP000992) unknown product [Thermoplasma volcanium]
Length = 100
Score = 28.9 bits (63), Expect = 9.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = +1
Query: 85 KCYTCGLPLLSRQFFVFPCQHSFHSDC--------LGRKVLEQAGVGGVIAYQGTSN 231
KCY C P+ + + F F + S H DC LG + LE V ++ N
Sbjct: 5 KCYVCEKPVKTGEKFTFTKKGSVHYDCFIADKRNKLGEEKLENLRVLSILLDSNLQN 61
>pir||B33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain A [validated] -
Sulfolobus acidocaldarius
Length = 880
Score = 28.9 bits (63), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
++ +D + ++EPGEKC CG
Sbjct: 40 IEGGVMDPKLGVIEPGEKCPVCG 62
>sp|P11512|RPA1_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT A'
pir||S04717 DNA-directed RNA polymerase (EC 2.7.7.6) chain A - Sulfolobus
acidocaldarius
emb|CAA32925.1| (X14818) RNA polymerase subunit A (AA 1-880) [Sulfolobus
acidocaldarius]
Length = 880
Score = 28.9 bits (63), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
++ +D + ++EPGEKC CG
Sbjct: 40 IEGGVMDPKLGVIEPGEKCPVCG 62
>pir||JQ1663 hybrid proline-rich protein - maize
emb|CAA42959.1| (X60432) prolin rich protein [Zea mays]
Length = 301
Score = 28.9 bits (63), Expect = 9.1
Identities = 18/41 (43%), Positives = 20/41 (47%), Gaps = 3/41 (7%)
Frame = -3
Query: 290 PVLPQPSPS---AYH*PGPSVSAFEVP*YAMTPPTPACSSTFRP 168
P P+PSP Y P P S VP Y PPTP S + P
Sbjct: 79 PPTPRPSPPYVPPYVPPTPRPSPPYVPPYVPVPPTPRPSPPYVP 122
>gb|AAD15547.1| (AC004850) vacuolar assembly protein VPS41 homolog (S53) [Homo
sapiens]
Length = 704
Score = 28.9 bits (63), Expect = 9.1
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = +1
Query: 67 IVEPGEKCYTCGLPLLSRQ------FFVFPCQHSFHSDCLGRKVLEQAGVGGVIAYQGTS 228
+V+ C +C P+L VF C+H FH +CL + A +
Sbjct: 634 LVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAA-----QFCNIC 688
Query: 229 NADTEGPG 252
+A GPG
Sbjct: 689 SAKNRGPG 696
>emb|CAB90157.1| (AL355013) putative vacuolar biogenesis protein; yeast end1 homolog
[Schizosaccharomyces pombe]
Length = 906
Score = 28.9 bits (63), Expect = 9.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 64 AIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL 168
A V KC TCG+ L F C HS+H C+
Sbjct: 863 AFVVQESKCSTCGIDL-ELPMVHFRCGHSYHQRCV 896
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,746,634
Number of Sequences: 705144
Number of extensions: 2520003
Number of successful extensions: 9383
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 8539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9292
length of database: 222,175,239
effective HSP length: 78
effective length of database: 167,174,007
effective search space used: 4012176168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)