Score E
Sequences producing significant alignments: (bits) Value
ref|NP_013390.1| Ribosomal protein S30A; Rps30ap [Saccharom... 96 6e-20
sp|O42952|RS30_SCHPO 40S RIBOSOMAL PROTEIN S30 >gi|7493319|... 91 2e-18
emb|CAC02584.1| (AL390114) probable 40s ribosomal protein s... 79 8e-15
sp|Q05472|RS30_HUMAN 40S RIBOSOMAL PROTEIN S30 >gi|1334234|... 74 4e-13
gb|AAA83776.1| (U41499) arsenite-resistance protein [Cricet... 74 4e-13
pir||A47416 ubiquitin-like protein / ribosomal protein S30,... 74 4e-13
gb|AAB52915.1| (U72543) ubiquitin-like/S30 ribosomal fusion... 74 4e-13
ref|NP_032016.1| Finkel-Biskis-Reilly murine sarcoma virus ... 74 4e-13
ref|NP_001988.1| Finkel-Biskis-Reilly murine sarcoma virus ... 74 4e-13
pir||T15642 hypothetical protein C26F1.4 - Caenorhabditis e... 73 6e-13
gb|AAF55815.1| (AE003732) CG15697 gene product [Drosophila ... 72 2e-12
emb|CAB79697.1| (AL161574) RIBOSOMAL PROTEIN S30 homolog [A... 69 1e-11
gb|AAC62141.1| (AC005169) 40S ribosomal protein S30 [Arabid... 69 1e-11
emb|CAB40969.1| (AJ238274) 40S ribosomal protein S30 [Oryzi... 66 7e-11
sp|Q9W6Y0|RS30_ORYLA 40S RIBOSOMAL PROTEIN S30 66 7e-11
sp|P49689|RS30_ARATH PROBABLE 40S RIBOSOMAL PROTEIN S30 62 2e-09
sp|O96269|RS30_PLAFA 40S RIBOSOMAL PROTEIN S30 >gi|7441133|... 59 1e-08
gb|AAK41214.1| (AE006714) LSU ribosomal protein S30E (rps30... 43 6e-04
sp|Q9Y9T9|RS30_AERPE 30S RIBOSOMAL PROTEIN S30 >gi|7521385|... 39 0.009
gb|AAG18370.1|AF273019_1 (AF273019) immunoglobulin light ch... 32 1.9
gb|AAB28467.2| (S65986) anti-insulin 193020 monoclonal anti... 32 1.9
gb|AAG18368.1|AF273017_1 (AF273017) immunoglobulin light ch... 31 2.5
dbj|BAB02844.1| (AB025634) gene_id:MSD21.13~unknown protein... 31 3.3
pir||S29577 Ig light chain - rainbow trout (fragment) >gi|6... 31 3.3
pir||A70132 cell division protein homolog - Lyme disease sp... 30 4.3
gb|AAD28287.1|AF139377_1 (AF139377) stearoyl acyl carrier p... 30 4.3
sp|P45264|FTSK_HAEIN CELL DIVISION PROTEIN FTSK HOMOLOG >gi... 30 5.6
sp|P37710|ALYS_ENTFA AUTOLYSIN PRECURSOR (PEPTIDOGLYCAN HYD... 30 5.6
ref|XP_016911.1| hypothetical protein FLJ14100 [Homo sapiens] 30 5.6
gb|AAK20923.1| (AY028400) flagellar hook control length pro... 30 7.4
gb|AAK02339.1| (AE006060) FtsK [Pasteurella multocida] 30 7.4
pir||PH1060 Ig light chain V region (clone 74-c1) - mouse (... 30 7.4
emb|CAA80113.1| (Z22139) immunoglobulin variable region [Mu... 30 7.4
pir||PH1059 Ig light chain V region (clone 17s-c1) - mouse ... 30 7.4
emb|CAA80086.1| (Z22112) immunoglobulin variable region [Mu... 30 7.4
gb|AAA96377.1| (U22996) immunoglobulin light chain [Mus mus... 30 7.4
pir||B75571 hypothetical protein - Deinococcus radiodurans ... 30 7.4
gb|AAA65403.1| (U23012) immunoglobulin light chain [Mus mus... 30 7.4
dbj|BAA03482.1| (D14629) imunoglobulin gamma-3 kappa chain ... 29 9.6
gb|AAA96774.1| (U51462) IgG anti-nucleosome kappa light cha... 29 9.6
gb|AAA19722.1| (L23163) immunoglobulin kappa chain [Mus mus... 29 9.6
emb|CAA53064.1| (X75315) SEB4B [Homo sapiens] 29 9.6
sp|P44215|YE89_HAEIN HYPOTHETICAL PROTEIN HI1489 >gi|107480... 29 9.6
gb|AAF23624.1| (AF188327) dioxygenase alpha subunit [Austra... 29 9.6
>ref|NP_013390.1| Ribosomal protein S30A; Rps30ap [Saccharomyces cerevisiae]
ref|NP_014825.1| Ribosomal protein S30B; Rps30bp [Saccharomyces cerevisiae]
sp|Q12087|RS30_YEAST 40S RIBOSOMAL PROTEIN S30
pir||S67074 ribosomal protein S30.e, cytosolic - yeast (Saccharomyces
cerevisiae)
gb|AAC49316.1| (U48699) Rps30ap [Saccharomyces cerevisiae]
gb|AAC49317.1| (U48700) yrpS30 [Saccharomyces cerevisiae]
gb|AAB67333.1| (U17243) L8003.23 gene product [Saccharomyces cerevisiae]
emb|CAA99391.1| (Z75090) ORF YOR182c [Saccharomyces cerevisiae]
gb|AAB41050.1| (U83406) Rps30bp [Saccharomyces cerevisiae]
gb|AAB41051.1| (U83407) Rps30bp [Saccharomyces cerevisiae]
Length = 63
Score = 96.3 bits (238), Expect = 6e-20
Identities = 47/56 (83%), Positives = 48/56 (84%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNP 179
HGSLARAGKVKSQTPKVEK EK K PKGRA KRL YTRRFVNVTL GKR+MNP P
Sbjct: 5 HGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRRMNPGP 60
>sp|O42952|RS30_SCHPO 40S RIBOSOMAL PROTEIN S30
pir||T39834 ribosomal protein s30 - fission yeast (Schizosaccharomyces pombe)
emb|CAA05693.1| (AJ002731) ribosomal protein s30 [Schizosaccharomyces pombe]
emb|CAA17057.2| (AL021839) ribosomal protein s30 [Schizosaccharomyces pombe]
emb|CAC00552.1| (AL390814) 40s ribosomal protein s30 [Schizosaccharomyces pombe]
Length = 61
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/55 (83%), Positives = 49/55 (88%), Gaps = 1/55 (1%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVT-LTGGKRKMNPN 176
HGSLARAGKVKSQTPKVEKQEK K PKGRA KRL Y RRFVNVT + GGKR+MNP+
Sbjct: 5 HGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPS 60
>emb|CAC02584.1| (AL390114) probable 40s ribosomal protein s30 [Leishmania major]
Length = 67
Score = 79.3 bits (194), Expect = 8e-15
Identities = 40/56 (71%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKR-KMNPNP 179
HGSLARAGKVK+QTPKV KQEK K P+GRALKRLKYTRRF++ T+ G++ MN P
Sbjct: 7 HGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLSKTVKPGEKVHMNKQP 63
>sp|Q05472|RS30_HUMAN 40S RIBOSOMAL PROTEIN S30
emb|CAA44546.1| (X62671) ribosomal protein S30 [Rattus rattus]
Length = 59
Score = 73.6 bits (179), Expect = 4e-13
Identities = 38/58 (65%), Positives = 43/58 (73%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNPGS 185
HGSLARAGKV+ QTPKV KQEK K GRA +R++Y RRFVNV T GK+K PN S
Sbjct: 3 HGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKK-GPNANS 59
>gb|AAA83776.1| (U41499) arsenite-resistance protein [Cricetulus griseus]
Length = 133
Score = 73.6 bits (179), Expect = 4e-13
Identities = 38/58 (65%), Positives = 43/58 (73%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNPGS 185
HGSLARAGKV+ QTPKV KQEK K GRA +R++Y RRFVNV T GK+K PN S
Sbjct: 77 HGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKK-GPNANS 133
>pir||A47416 ubiquitin-like protein / ribosomal protein S30, cytosolic
[validated] - rat
emb|CAA44545.1| (X62671) fusion protein [Rattus rattus]
Length = 133
Score = 73.6 bits (179), Expect = 4e-13
Identities = 38/58 (65%), Positives = 43/58 (73%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNPGS 185
HGSLARAGKV+ QTPKV KQEK K GRA +R++Y RRFVNV T GK+K PN S
Sbjct: 77 HGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKK-GPNANS 133
>gb|AAB52915.1| (U72543) ubiquitin-like/S30 ribosomal fusion protein [Sus scrofa]
Length = 133
Score = 73.6 bits (179), Expect = 4e-13
Identities = 38/58 (65%), Positives = 43/58 (73%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNPGS 185
HGSLARAGKV+ QTPKV KQEK K GRA +R++Y RRFVNV T GK+K PN S
Sbjct: 77 HGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKK-GPNANS 133
>ref|NP_032016.1| Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously
expressed (fox derived) [Mus musculus]
pir||I48346 ribosomal protein fau - mouse
emb|CAA46715.1| (X65922) fau [Mus musculus]
gb|AAA91564.1| (L33715) Fau gene product [Mus musculus]
dbj|BAA05655.1| (D26610) monoclonal nonspecific suppressor factor beta [Mus
musculus]
gb|AAF80246.1|AF147745_1 (AF147745) monoclonal non-specific suppressor factor beta [Mus
musculus]
dbj|BAB22034.1| (AK002355) putative [Mus musculus]
dbj|BAB25684.1| (AK008466) putative [Mus musculus]
Length = 133
Score = 73.6 bits (179), Expect = 4e-13
Identities = 38/58 (65%), Positives = 43/58 (73%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNPGS 185
HGSLARAGKV+ QTPKV KQEK K GRA +R++Y RRFVNV T GK+K PN S
Sbjct: 77 HGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKK-GPNANS 133
>ref|NP_001988.1| Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously
expressed (fox derived); ribosomal protein S30 [Homo
sapiens]
ref|XP_006522.3| Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously
expressed (fox derived); ribosomal protein S30 [Homo
sapiens]
pir||JC1278 ubiquitin-like protein / ribosomal protein S30, cytosolic - human
emb|CAA46716.1| (X65923) fau [Homo sapiens]
emb|CAA46714.1| (X65921) fau 1 [Homo sapiens]
dbj|BAB15515.1| (AK026639) unnamed protein product [Homo sapiens]
Length = 133
Score = 73.6 bits (179), Expect = 4e-13
Identities = 38/58 (65%), Positives = 43/58 (73%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNPGS 185
HGSLARAGKV+ QTPKV KQEK K GRA +R++Y RRFVNV T GK+K PN S
Sbjct: 77 HGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKK-GPNANS 133
>pir||T15642 hypothetical protein C26F1.4 - Caenorhabditis elegans
gb|AAB37076.1| (U53148) similar to 40S ribosomal protein S30/ubiquitin-like
protein [Caenorhabditis elegans]
Length = 130
Score = 73.2 bits (178), Expect = 6e-13
Identities = 35/58 (60%), Positives = 46/58 (78%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNPGS 185
HGSLARAGKV++QTPKV+KQ+K K +GRA +R++YTRR+VNV +G +K PN S
Sbjct: 74 HGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVA-SGPGKKRGPNSNS 130
>gb|AAF55815.1| (AE003732) CG15697 gene product [Drosophila melanogaster]
Length = 132
Score = 71.6 bits (174), Expect = 2e-12
Identities = 37/58 (63%), Positives = 42/58 (71%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPNPGS 185
HGSLARAGKVK QTPKVEKQEK K GRA +R++Y RRFVN G+R+ PN S
Sbjct: 75 HGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNFVQGFGRRR-GPNANS 131
>emb|CAB79697.1| (AL161574) RIBOSOMAL PROTEIN S30 homolog [Arabidopsis thaliana]
dbj|BAB09885.1| (AB013392) 40S ribosomal protein S30 homolog [Arabidopsis thaliana]
Length = 62
Score = 68.9 bits (167), Expect = 1e-11
Identities = 35/55 (63%), Positives = 41/55 (73%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPN 176
HGSLARAGKV+ QTPKV KQ+K K P+GRA KRL++ RRFV + GK K PN
Sbjct: 5 HGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGK-KRGPN 58
>gb|AAC62141.1| (AC005169) 40S ribosomal protein S30 [Arabidopsis thaliana]
Length = 68
Score = 68.9 bits (167), Expect = 1e-11
Identities = 35/55 (63%), Positives = 41/55 (73%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPN 176
HGSLARAGKV+ QTPKV KQ+K K P+GRA KRL++ RRFV + GK K PN
Sbjct: 11 HGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGK-KRGPN 64
>emb|CAB40969.1| (AJ238274) 40S ribosomal protein S30 [Oryzias latipes]
Length = 76
Score = 66.2 bits (160), Expect = 7e-11
Identities = 31/51 (60%), Positives = 39/51 (75%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRK 164
HGSLARAGKV+ QTP V+K E+ + GRA +R++Y RRFVNV T GK+K
Sbjct: 20 HGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKK 70
>sp|Q9W6Y0|RS30_ORYLA 40S RIBOSOMAL PROTEIN S30
Length = 59
Score = 66.2 bits (160), Expect = 7e-11
Identities = 31/51 (60%), Positives = 39/51 (75%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRK 164
HGSLARAGKV+ QTP V+K E+ + GRA +R++Y RRFVNV T GK+K
Sbjct: 3 HGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKK 53
>sp|P49689|RS30_ARATH PROBABLE 40S RIBOSOMAL PROTEIN S30
Length = 60
Score = 61.6 bits (148), Expect = 2e-09
Identities = 32/55 (58%), Positives = 39/55 (70%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPN 176
HGSLARAGKV+ + KV KQ+K K P+GRA KRL++ RRFV + GK K PN
Sbjct: 3 HGSLARAGKVRGRHQKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGK-KRGPN 56
>sp|O96269|RS30_PLAFA 40S RIBOSOMAL PROTEIN S30
pir||A71604 ribosomal protein S30 PFB0885w - malaria parasite (Plasmodium
falciparum)
gb|AAC71966.1| (AE001422) ribosomal protein S30 [Plasmodium falciparum]
Length = 58
Score = 58.9 bits (141), Expect = 1e-08
Identities = 33/55 (60%), Positives = 36/55 (65%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNVTLTGGKRKMNPN 176
HGSLARAGKVK+QTPKV K +K K GRA KR Y RRF + G RK PN
Sbjct: 5 HGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD----NGGRKKGPN 55
>gb|AAK41214.1| (AE006714) LSU ribosomal protein S30E (rps30E) [Sulfolobus
solfataricus]
Length = 52
Score = 43.1 bits (100), Expect = 6e-04
Identities = 23/41 (56%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSK-VPKGRALKRLKYTRRFV 134
HGSL +AGKV+SQTPK++ +EK K VP+ R R +Y +R V
Sbjct: 4 HGSLTKAGKVRSQTPKIQPKEKHKEVPRVR--NRKEYEKRVV 43
>sp|Q9Y9T9|RS30_AERPE 30S RIBOSOMAL PROTEIN S30
pir||C72528 probable ribosomal protein S30 APES068 - Aeropyrum pernix (strain
K1)
dbj|BAA81211.1| (AP000063) 50aa long hypothetical 30S ribosomal protein S30
[Aeropyrum pernix]
Length = 50
Score = 39.3 bits (90), Expect = 0.009
Identities = 20/43 (46%), Positives = 26/43 (59%)
Frame = +3
Query: 12 HGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNV 140
HGSL +AGKV+ QTP++ ++K P R RLKY R V
Sbjct: 4 HGSLTKAGKVRKQTPRLPAKQKKNYPP-RLKNRLKYQVRIEKV 45
>gb|AAG18370.1|AF273019_1 (AF273019) immunoglobulin light chain precursor [Salmo salar]
Length = 238
Score = 31.6 bits (70), Expect = 1.9
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 3/57 (5%)
Frame = +2
Query: 35 QGQVSDSQGREAREVQGPQG---PCSQAPQVHPSIRQRYPHWWQEKDEPQPRLLNDWLKT 205
+GQV+ +Q + V C + V+ + Y HW+Q+K P LL W KT
Sbjct: 19 RGQVTVTQTPAVKSVSVGHSVSLSCKTSSAVYSNSNGHYLHWYQQKPGGAPELLIYWAKT 78
>gb|AAB28467.2| (S65986) anti-insulin 193020 monoclonal antibody kappa chain
variable region [Mus sp.]
Length = 109
Score = 31.6 bits (70), Expect = 1.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
S+ RY HW+Q+K E P+L W+ T SG+ A
Sbjct: 28 SVSSRYLHWYQQKSEASPKL---WIYGTSNLASGVPA 61
>gb|AAG18368.1|AF273017_1 (AF273017) immunoglobulin light chain precursor [Salmo salar]
Length = 238
Score = 31.2 bits (69), Expect = 2.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 35 QGQVSDSQGREAREVQGPQG---PCSQAPQVHPSIRQRYPHWWQEKDEPQPRLLNDWLKT 205
+GQV+ +Q + V C + V+ Y HW+Q+K P LL W KT
Sbjct: 19 RGQVTVTQTPAVKSVSVGNSVSLSCKTSSAVYSDSNGHYLHWYQQKPGGAPELLIYWAKT 78
>dbj|BAB02844.1| (AB025634) gene_id:MSD21.13~unknown protein [Arabidopsis thaliana]
Length = 565
Score = 30.8 bits (68), Expect = 3.3
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 372 PDAE*GRSASLPFPFLILKGAQPIPCDPTQSIIPLLSEVNHCCGPQA 232
PDAE + + PFL G + C + PL S +NH C P A
Sbjct: 455 PDAEKEETEEITRPFLDALGDEYSDCCQGTAFFPLQSCMNHSCCPNA 501
>pir||S29577 Ig light chain - rainbow trout (fragment)
emb|CAA48530.1| (X68519) immunoglobulin light chain [Oncorhynchus mykiss]
Length = 233
Score = 30.8 bits (68), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = +2
Query: 98 CSQAPQVHPSIRQRYPHWWQEKDEPQPRLLNDWLKT 205
C + V+ Y HW+Q+K P+LL W KT
Sbjct: 38 CKTSSAVYSDGNGHYLHWYQQKPGGAPKLLIYWAKT 73
>pir||A70132 cell division protein homolog - Lyme disease spirochete
gb|AAC66637.1| (AE001136) cell division protein, putative [Borrelia burgdorferi]
Length = 787
Score = 30.4 bits (67), Expect = 4.3
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -1
Query: 221 IPHILSFLTNRLRAGVGVHLSLATSEGNVDESTGVLEA 108
+ +++S L RA VG+HL LAT +VD TGV++A
Sbjct: 598 LENLISRLAAMARA-VGIHLVLATQRPSVDVITGVIKA 634
>gb|AAD28287.1|AF139377_1 (AF139377) stearoyl acyl carrier protein desaturase Lldd3A20
[Lupinus luteus]
Length = 384
Score = 30.4 bits (67), Expect = 4.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 288 TQSIIPLLSEVNHCCGPQANIPDSA 214
+QS++PLL V C PQ +PDS+
Sbjct: 65 SQSVLPLLKPVEQCWQPQEFVPDSS 89
>sp|P45264|FTSK_HAEIN CELL DIVISION PROTEIN FTSK HOMOLOG
pir||G64131 sporulation protein spoIIIE - Haemophilus influenzae (strain Rd
KW20)
gb|AAC23240.1| (U32833) cell division protein FtsK-related protein [Haemophilus
influenzae Rd]
Length = 529
Score = 30.0 bits (66), Expect = 5.6
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -1
Query: 221 IPHILSFLTNRLRAGVGVHLSLATSEGNVDESTGVLEA 108
I +++ L + RA +G+HL LAT +VD TG+++A
Sbjct: 334 IEELIARLAQKARA-IGIHLILATQRPSVDVITGLIKA 370
>sp|P37710|ALYS_ENTFA AUTOLYSIN PRECURSOR (PEPTIDOGLYCAN HYDROLASE) (BETA-GLYCOSIDASE)
pir||A38109 autolysin - Enterococcus faecalis
gb|AAA67325.1| (M58002) bacterial cell wall hydrolase [Enterococcus faecalis]
Length = 671
Score = 30.0 bits (66), Expect = 5.6
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = -3
Query: 291 PTQSIIPLLSEVNHCCGPQANIPDSAHIVVFNQSFKSRGWGSS 163
PTQS ++E+ C P A D V+ Q+ GWG+S
Sbjct: 176 PTQSPSEFIAELARCAQPIAQANDLYASVMMAQAIVESGWGAS 218
>ref|XP_016911.1| hypothetical protein FLJ14100 [Homo sapiens]
Length = 230
Score = 30.0 bits (66), Expect = 5.6
Identities = 15/36 (41%), Positives = 20/36 (54%)
Frame = +2
Query: 32 RQGQVSDSQGREAREVQGPQGPCSQAPQVHPSIRQR 139
R G+ SDSQ A ++G + PCS A P +QR
Sbjct: 2 RPGKPSDSQATAASPLRGRKSPCSAASAKAPVPKQR 37
>gb|AAK20923.1| (AY028400) flagellar hook control length protein [Aeromonas
hydrophila]
Length = 362
Score = 29.6 bits (65), Expect = 7.4
Identities = 21/57 (36%), Positives = 27/57 (46%)
Frame = +2
Query: 41 QVSDSQGREAREVQGPQGPCSQAPQVHPSIRQRYPHWWQEKDEPQPRLLNDWLKTTI 211
+V+ QG E QG Q Q PQ+ RQ WQE+ EP + DWL T +
Sbjct: 316 EVNVGQGSE----QGQQEKWQQ-PQIMAGRRQ-----WQEELEPTDGTMQDWLNTLV 362
>gb|AAK02339.1| (AE006060) FtsK [Pasteurella multocida]
Length = 930
Score = 29.6 bits (65), Expect = 7.4
Identities = 14/38 (36%), Positives = 25/38 (64%)
Frame = -1
Query: 221 IPHILSFLTNRLRAGVGVHLSLATSEGNVDESTGVLEA 108
+ +++ L + RA +G+HL LAT +VD TG+++A
Sbjct: 733 VEELIARLAQKARA-IGIHLILATQRPSVDVITGLIKA 769
>pir||PH1060 Ig light chain V region (clone 74-c1) - mouse (fragment)
Length = 99
Score = 29.6 bits (65), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
S+R Y HW+Q+K P+L W+ +T SG+ A
Sbjct: 28 SVRSSYLHWYQQKPGSSPKL---WIYSTSNLASGVPA 61
>emb|CAA80113.1| (Z22139) immunoglobulin variable region [Mus musculus domesticus]
Length = 108
Score = 29.6 bits (65), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
S+R Y HW+Q+K P+L W+ +T SG+ A
Sbjct: 28 SVRSSYLHWYQQKPGSSPKL---WIYSTSNLASGVPA 61
>pir||PH1059 Ig light chain V region (clone 17s-c1) - mouse (fragment)
Length = 99
Score = 29.6 bits (65), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
S+R Y HW+Q+K P+L W+ +T SG+ A
Sbjct: 28 SVRSSYLHWYQQKPGSSPKL---WIYSTSNLASGVPA 61
>emb|CAA80086.1| (Z22112) immunoglobulin variable region [Mus musculus domesticus]
Length = 108
Score = 29.6 bits (65), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
S+R Y HW+Q+K P+L W+ +T SG+ A
Sbjct: 28 SVRSSYLHWYQQKPGSSPKL---WIYSTSNLASGVPA 61
>gb|AAA96377.1| (U22996) immunoglobulin light chain [Mus musculus]
Length = 111
Score = 29.6 bits (65), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
S+ RY HW+Q+K P+L W+ +T SG+ A
Sbjct: 27 SVSSRYLHWYQQKPGSSPKL---WMYSTSNLASGVPA 60
>pir||B75571 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF09613.1|AE001865_10 (AE001865) hypothetical protein [Deinococcus radiodurans]
Length = 293
Score = 29.6 bits (65), Expect = 7.4
Identities = 16/48 (33%), Positives = 25/48 (51%)
Frame = +2
Query: 263 LSNGMMDWVGSHGIG*APLRIKKGNGKEALRPYSASGVSCQMQQHLFA 406
+ G ++W G G L++ GN + ALRP S+ V ++ LFA
Sbjct: 205 IHGGNLNWNGELASGEHQLKLHGGNARLALRPDSSLRVDARVTGGLFA 252
>gb|AAA65403.1| (U23012) immunoglobulin light chain [Mus musculus]
Length = 112
Score = 29.6 bits (65), Expect = 7.4
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
S+ Y HW+Q+K P+L W+ TT SG+ A
Sbjct: 28 SVSSSYLHWYQQKPGSSPKL---WIYTTSSLASGVPA 61
>dbj|BAA03482.1| (D14629) imunoglobulin gamma-3 kappa chain precursor [Mus
musculus]
Length = 131
Score = 29.3 bits (64), Expect = 9.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGM 229
S+R Y HW+Q+K P+L W+ +T SG+
Sbjct: 50 SVRSSYLHWYQQKPGSSPKL---WIYSTSNLASGV 81
>gb|AAA96774.1| (U51462) IgG anti-nucleosome kappa light chain variable region [Mus
musculus]
Length = 108
Score = 29.3 bits (64), Expect = 9.6
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +2
Query: 125 SIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
S+ RY HW+Q+K P+L W+ T SG+ A
Sbjct: 28 SVNSRYLHWYQQKSGASPKL---WIYGTSNLASGVPA 61
>gb|AAA19722.1| (L23163) immunoglobulin kappa chain [Mus musculus]
Length = 108
Score = 29.3 bits (64), Expect = 9.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 86 PQGPCSQAPQVHPSIRQRYPHWWQEKDEPQPRLLNDWLKTTICAESGMLA 235
P G + S+ Y HW+Q++ P+L W+ +T SG+ A
Sbjct: 15 PGGKVTMTCTASSSVSSSYKHWYQQRPGSSPKL---WIYSTSTLASGVPA 61
>emb|CAA53064.1| (X75315) SEB4B [Homo sapiens]
Length = 230
Score = 29.3 bits (64), Expect = 9.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 105 KRLKYTRRFVNVTLTGGKRK 164
+R++Y RRFVNV T GK+K
Sbjct: 1 RRMQYNRRFVNVVPTFGKKK 20
>sp|P44215|YE89_HAEIN HYPOTHETICAL PROTEIN HI1489
pir||I64031 hypothetical protein HI1489 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC23143.1| (U32826) H. influenzae predicted coding region HI1489 [Haemophilus
influenzae Rd]
Length = 184
Score = 29.3 bits (64), Expect = 9.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 6 RPHGSLARAGKVKSQTPKVEKQEKSKVPKGRALKRLKYTRRFVNV 140
+PH ++ R+GK +S+T K ++ E KV + Y RFV +
Sbjct: 120 KPHFAVIRSGKNQSETVKAQQAEDKKVQDA-----ILYVERFVQL 159
>gb|AAF23624.1| (AF188327) dioxygenase alpha subunit [Australian soil clone OD18]
Length = 164
Score = 29.3 bits (64), Expect = 9.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 32 RQGQVSDSQGREAREVQGPQGPCSQAPQVHPSIRQRYPHWW 154
R +++D RE EVQ GP Q HP I +P+ W
Sbjct: 73 RVNRITDESWREKPEVQQILGPVGMRAQSHPHI---FPNMW 110
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,899,358
Number of Sequences: 705144
Number of extensions: 3542330
Number of successful extensions: 12290
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 11879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12278
length of database: 222,175,239
effective HSP length: 107
effective length of database: 146,724,831
effective search space used: 5575543578
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)