The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1605_C01_E01ZS5.seq 1605_C01_E01ZS5 0 0 0 1 669
(669 letters)
Database: nr
705,144 sequences; 222,175,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||A32230 tenascin precursor - chicken >gi|211718|gb|AAA4... 34 1.1
gb|AAA48748.1| (M20816) cytotactin [Gallus gallus] 33 2.4
pir||A31930 cytotactin - chicken (fragments) 33 2.4
gb|AAA49084.1| (M23121) 200 kd tenascin precursor [Gallus g... 32 3.1
gb|AAA49085.1| (M23121) 190 kd tenascin precursor [Gallus g... 32 3.1
emb|CAA30824.1| (X08030) tenascin [Gallus gallus] 32 3.1
sp|P10039|TENA_CHICK TENASCIN PRECURSOR (TN) (HEXABRACHION)... 32 3.1
gb|AAG13466.1|AC026758_3 (AC026758) hypothetical protein [O... 32 5.3
ref|NP_002143.1| histidine-rich calcium-binding protein pre... 31 7.0
sp|Q29116|TENA_PIG TENASCIN PRECURSOR (TN) (HEXABRACHION) (... 31 9.1
pir||T42629 tenascin-X - bovine >gi|2462979|emb|CAA72671.1|... 31 9.1
>pir||A32230 tenascin precursor - chicken
gb|AAA48745.1| (J04519) cytotactin precursor [Gallus gallus]
Length = 1810
Score = 33.9 bits (76), Expect = 1.1
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSRH-GGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C ++ R GQ G CG+ RCP + Q+ GR
Sbjct: 404 CGELRCPNDCHNRGRCINGQCVCDEGFIGEDCGELRCPNDCQQRGR 449
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 466 CGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 511
>gb|AAA48748.1| (M20816) cytotactin [Gallus gallus]
Length = 672
Score = 32.7 bits (73), Expect = 2.4
Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 5/44 (11%)
Frame = -3
Query: 559 RRWCGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
R CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 5 REDCGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 53
>pir||A31930 cytotactin - chicken (fragments)
Length = 933
Score = 32.7 bits (73), Expect = 2.4
Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 5/44 (11%)
Frame = -3
Query: 559 RRWCGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
R CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 5 REDCGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 53
>gb|AAA49084.1| (M23121) 200 kd tenascin precursor [Gallus gallus]
Length = 1714
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 466 CGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 511
Score = 31.6 bits (70), Expect = 5.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C ++ R GQ G CG+ RCP + GR
Sbjct: 404 CGELRCPNDCHNRGRCINGQCVCDEGFIGEDCGELRCPNDCHNRGR 449
>gb|AAA49085.1| (M23121) 190 kd tenascin precursor [Gallus gallus]
Length = 1532
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 466 CGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 511
Score = 31.6 bits (70), Expect = 5.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C ++ R GQ G CG+ RCP + GR
Sbjct: 404 CGELRCPNDCHNRGRCINGQCVCDEGFIGEDCGELRCPNDCHNRGR 449
>emb|CAA30824.1| (X08030) tenascin [Gallus gallus]
Length = 632
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 375 CGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 420
Score = 31.6 bits (70), Expect = 5.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C ++ R GQ G CG+ RCP + GR
Sbjct: 313 CGELRCPNDCHNRGRCINGQCVCDEGFIGEDCGELRCPNDCHNRGR 358
>sp|P10039|TENA_CHICK TENASCIN PRECURSOR (TN) (HEXABRACHION) (CYTOTACTIN) (NEURONECTIN)
(GMEM) (JI) (MIOTENDINOUS ANTIGEN)
(GLIOMA-ASSOCIATED-EXTRACELLULAR MATRIX ANTIGEN) (GP
150-225)
gb|AAA49086.1| (M23121) 230 kd tenascin precursor [Gallus gallus]
Length = 1808
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 466 CGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 511
Score = 31.6 bits (70), Expect = 5.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CG+LRC C ++ R GQ G CG+ RCP + GR
Sbjct: 404 CGELRCPNDCHNRGRCINGQCVCDEGFIGEDCGELRCPNDCHNRGR 449
>gb|AAG13466.1|AC026758_3 (AC026758) hypothetical protein [Oryza sativa]
Length = 467
Score = 31.6 bits (70), Expect = 5.3
Identities = 14/37 (37%), Positives = 22/37 (58%)
Frame = -3
Query: 568 IQFRRWCGQLRCDGSCPSQSRHGGQQRWQHGCCGDRR 458
I+FRR G+ +GS ++ GG ++W+ G G RR
Sbjct: 231 IRFRRRMGRRSTEGSRRREAASGGGRQWRRGHAGQRR 267
>ref|NP_002143.1| histidine-rich calcium-binding protein precursor [Homo sapiens]
ref|XP_008915.2| histidine-rich calcium-binding protein precursor [Homo sapiens]
sp|P23327|SRCH_HUMAN SARCOPLASMIC RETICULUM HISTIDINE-RICH CALCIUM-BINDING PROTEIN
PRECURSOR
pir||A54660 histidine rich calcium binding protein - human
gb|AAA88071.1| (M60052) histidine-rich calcium binding protein [Homo sapiens]
Length = 699
Score = 31.2 bits (69), Expect = 7.0
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = +3
Query: 12 VRNHLNSSTRYPNTFTNYTKNNNHHVWSH 98
+R+HL+S +P+ + + N HH WSH
Sbjct: 57 LRHHLHSPRDHPDENKDVSTENGHHFWSH 85
>sp|Q29116|TENA_PIG TENASCIN PRECURSOR (TN) (HEXABRACHION) (CYTOTACTIN) (NEURONECTIN)
(GMEM) (JI) (MIOTENDINOUS ANTIGEN)
(GLIOMA-ASSOCIATED-EXTRACELLULAR MATRIX ANTIGEN) (GP
150-225) (TENASCIN-C) (TN-C) (P230)
pir||S19694 tenascin precursor - pig
emb|CAA43796.1| (X61599) Tenascin [Sus scrofa]
Length = 1746
Score = 30.8 bits (68), Expect = 9.1
Identities = 18/41 (43%), Positives = 20/41 (47%), Gaps = 5/41 (12%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 428
CGQ RC G C Q R GQ G CG R CP + G+
Sbjct: 558 CGQRRCPGDCHGQGRCVDGQCVCHEGFTGLDCGQRSCPNDCSNWGQ 603
>pir||T42629 tenascin-X - bovine
emb|CAA72671.1| (Y11915) Tenascin-X [Bos taurus]
Length = 4135
Score = 30.8 bits (68), Expect = 9.1
Identities = 32/95 (33%), Positives = 40/95 (41%), Gaps = 16/95 (16%)
Frame = -3
Query: 550 CGQLRCDGSCPSQSRHGG-----QQRWQHGCCGDRRCPREDQRSGR*SQVL*SGRACS-- 392
CG RC G C + R G ++ CG R CPR Q G Q L C
Sbjct: 522 CGSRRCPGDCRGRGRCGDGVCSCDVGYEGEDCGKRSCPRGCQGRG---QCLEGRCVCDDG 578
Query: 391 -QSEIQFRR*CGRWCGQQ--CR------W*SLDHQWCGQLQCVESYPSRSR 266
+ E R C R C Q+ C+ W + CG C + R R
Sbjct: 579 YEGEDCGVRRCPRDCNQRGVCQDGVCTCWEGFAGEDCGLRVCPSNCHRRGR 629
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.304 0.122 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,752,436
Number of Sequences: 705144
Number of extensions: 3022263
Number of successful extensions: 4723
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4666
length of database: 222,175,239
effective HSP length: 114
effective length of database: 141,788,823
effective search space used: 15313192884
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)