The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1605_D10_G19ZS5.seq 1605_D10_G19ZS5 0 0 0 1 532
(521 letters)
Database: nr
705,144 sequences; 222,175,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07868|PBPB_BACSU PENICILLIN-BINDING PROTEIN 2B (PBP-2B)... 30 7.1
pir||T06982 glutenin low molecular weight chain (clone L4) ... 30 9.2
>sp|Q07868|PBPB_BACSU PENICILLIN-BINDING PROTEIN 2B (PBP-2B)
pir||C53292 penicillin-binding protein 2B (cell-division septum) pbpB -
Bacillus subtilis
gb|AAC36837.1| (L09703) penicillin-binding protein [Bacillus subtilis]
emb|CAA92527.1| (Z68230) high molecular weight penicillin binding protein [Bacillus
subtilis]
emb|CAB13389.1| (Z99111) penicillin-binding protein 2B [Bacillus subtilis]
Length = 716
Score = 30.4 bits (67), Expect = 7.1
Identities = 17/40 (42%), Positives = 22/40 (54%)
Frame = +3
Query: 294 FSGREIQKFGDFKVAGSRREPSLAHSNGVGAFERTHQDGV 413
F+ E K G F+V G+ P H+NGVG T+ DGV
Sbjct: 328 FNANEKYKSGTFEVGGA---PVKDHNNGVGWGPTTYHDGV 364
>pir||T06982 glutenin low molecular weight chain (clone L4) precursor - wheat
gb|AAB48479.1| (U86030) low-molecular-weight glutenin storage protein [Triticum
aestivum]
Length = 359
Score = 30.0 bits (66), Expect = 9.2
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = -3
Query: 435 ARVSENRQRRPGGFSRKRQRRCCEQAKVRDESQPP*SPQTFESPFLRR 292
A++S+ +Q+ P FS+++Q + +Q + QPP S Q + PF ++
Sbjct: 19 AQISQQQQQPP--FSQQQQPQFSQQPPFSQQQQPPFSQQQQQPPFAQQ 64
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,800,001
Number of Sequences: 705144
Number of extensions: 4182336
Number of successful extensions: 184683603110
Number of sequences better than 10.0: 268721844
Number of HSP's better than 10.0 without gapping: 9075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9378
length of database: 222,175,239
effective HSP length: 110
effective length of database: 144,609,399
effective search space used: 9110392137
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)