Score E
Sequences producing significant alignments: (bits) Value
gb|AAF56673.1| (AE003759) CG6051 gene product [Drosophila m... 35 0.24
sp|P35146|AROD_BACSU 3-DEHYDROQUINATE DEHYDRATASE (3-DEHYDR... 33 0.68
ref|NP_055548.1| KIAA0305 gene product [Homo sapiens] >gi|2... 32 2.0
ref|XP_003699.3| KIAA0305 gene product [Homo sapiens] 32 2.0
sp|O02008|TRA2_DROVI TRANSFORMER-2 SEX-DETERMINING PROTEIN ... 32 2.0
pir||T37840 probable vacuolar protein - fission yeast (Sch... 32 2.0
gb|AAF52609.1| (AE003620) CG8506 gene product [Drosophila m... 32 2.0
pir||T49237 hypothetical protein F7K15.80 - Arabidopsis tha... 31 2.6
gb|AAC46631.1| (U23545) Hk protein [Drosophila melanogaster] 31 2.6
gb|AAF46567.1| (AE003449) Hk gene product [Drosophila melan... 31 2.6
gb|AAG10615.1|AC008030_15 (AC008030) Hypothetical protein [... 31 2.6
pir||T18961 FAB1 protein homolog VF11C1L.1 - Caenorhabditis... 31 2.6
pir||T40375 phosphatidylinositol-4-phosphate 5-kinase - fis... 31 3.4
gb|AAF56679.1| (AE003759) CG6001 gene product [Drosophila m... 30 4.4
ref|NP_116674.1| type II PI(4)P5-kinase (PIP4,5 kinase) sim... 30 4.4
sp|P34756|FAB1_YEAST PROBABLE PHOSPHATIDYLINOSITOL-4-PHOSPH... 30 4.4
ref|NP_071735.1| FYVE-finger-containing Rab5 effector prote... 30 4.4
dbj|BAB31910.1| (AK019909) putative [Mus musculus] 30 4.4
ref|NP_035216.1| phosphoinositide kinase, fyve-containing [... 30 4.4
dbj|BAB46907.1| (AB060914) hypothetical protein [Macaca fas... 30 4.4
pir||T48578 hypothetical protein T31B5.130 - Arabidopsis th... 30 5.8
gb|AAF64468.1|AF239997_1 (AF239997) smad anchor for recepto... 30 5.8
gb|AAF46725.1| (AE003454) Sara gene product [Drosophila mel... 30 5.8
pir||T09358 hypothetical protein F23K16.50 - Arabidopsis th... 30 5.8
sp|O06411|PIT_MYCTU PROBABLE LOW-AFFINITY INORGANIC PHOSPHA... 30 7.6
gb|AAK44792.1| (AE006955) phosphate transport protein [Myco... 30 7.6
pir||T17457 SARA protein - African clawed frog >gi|4092769|... 30 7.6
pir||T25148 hypothetical protein VT23B5.2 - Caenorhabditis ... 30 7.6
pir||T13576 hypothetical protein 52C10.5 - fruit fly (Droso... 30 7.6
sp|P34185|TOP1_SYNP7 DNA TOPOISOMERASE I (OMEGA-PROTEIN) (R... 30 7.6
pir||T33568 hypothetical protein R160.7 - Caenorhabditis el... 30 7.6
pir||T22532 hypothetical protein F53A2.8 - Caenorhabditis e... 30 7.6
pir||T24806 hypothetical protein T10G3.5 - Caenorhabditis e... 30 7.6
gb|AAF48305.1| (AE003493) CG9941 gene product [Drosophila m... 30 7.6
gb|AAK46387.1| (AE007061) polyketide synthase [Mycobacteriu... 30 7.6
pir||G70944 probable polyketide synthase Rv2048c - Mycobact... 30 7.6
gb|AAF57789.1| (AE003802) EG:52C10.5 gene product [Drosophi... 30 7.6
ref|NP_078789.1| FYVE and coiled-coil domain containing 1; ... 30 7.6
ref|XP_016981.1| FYVE and coiled-coil domain containing 1 [... 30 7.6
gb|AAK52089.1| (AY032860) EEA1 [Caenorhabditis elegans] 30 7.6
dbj|BAA34514.1| (AB018337) KIAA0794 protein [Homo sapiens] 29 9.9
ref|NP_079434.1| hypothetical protein FLJ22251 [Homo sapien... 29 9.9
pir||T37956 probable vacuolar protein sorting-associated pr... 29 9.9
gb|AAK50771.1|AF361055_1 (AF361055) FYVE-finger protein EIP... 29 9.9
emb|CAC17732.1| (AJ250024) FYVE-finger containing protein [... 29 9.9
gb|AAD03047.1| (AF098795) type I polyketide synthase; Cfa6 ... 29 9.9
>gb|AAF56673.1| (AE003759) CG6051 gene product [Drosophila melanogaster]
Length = 920
Score = 34.7 bits (78), Expect = 0.24
Identities = 15/21 (71%), Positives = 17/21 (80%), Gaps = 6/21 (28%)
Frame = +2
Query: 53 MGCQ------RRRCHCRVCGGIWCRVC 115
M CQ RRR HCR CGG++C VC
Sbjct: 847 MACQTPFTAFRRRHHCRNCGGVFCGVC 873
>sp|P35146|AROD_BACSU 3-DEHYDROQUINATE DEHYDRATASE (3-DEHYDROQUINASE) (TYPE I DHQASE)
pir||S45563 3-dehydroquinate dehydratase (EC 4.2.1.10) aroC - Bacillus subtilis
gb|AAA67501.1| (L09228) dehydroquinate dehydratase [Bacillus subtilis]
emb|CAB14240.1| (Z99116) 3-dehydroquinate dehydratase [Bacillus subtilis]
Length = 255
Score = 33.1 bits (74), Expect = 0.68
Identities = 19/70 (27%), Positives = 35/70 (49%)
Frame = +1
Query: 196 KSSDLQAVDCENFDGALSVRASLLGKSSDVTLAKPHSAFETTSRSDVSSGEVQESCVCRL 375
++ D+ +D E F G +V+A V+LA+ ++ + S D V++ + RL
Sbjct: 106 QTKDIDLIDIELFSGDANVKAL-------VSLAEENNVYVVMSNHDFEKTPVKDEIISRL 158
Query: 376 RNSEDLVRYI 405
R +DL +I
Sbjct: 159 RKMQDLGAHI 168
>ref|NP_055548.1| KIAA0305 gene product [Homo sapiens]
dbj|BAA20764.1| (AB002303) KIAA0305 [Homo sapiens]
Length = 1539
Score = 31.6 bits (70), Expect = 2.0
Identities = 13/21 (61%), Positives = 16/21 (75%), Gaps = 6/21 (28%)
Frame = +2
Query: 53 MGCQ------RRRCHCRVCGGIWCRVC 115
M CQ +RR HCR CG ++C VC
Sbjct: 754 MNCQVKFTFTKRRHHCRACGKVFCGVC 780
>ref|XP_003699.3| KIAA0305 gene product [Homo sapiens]
Length = 1539
Score = 31.6 bits (70), Expect = 2.0
Identities = 13/21 (61%), Positives = 16/21 (75%), Gaps = 6/21 (28%)
Frame = +2
Query: 53 MGCQ------RRRCHCRVCGGIWCRVC 115
M CQ +RR HCR CG ++C VC
Sbjct: 754 MNCQVKFTFTKRRHHCRACGKVFCGVC 780
>sp|O02008|TRA2_DROVI TRANSFORMER-2 SEX-DETERMINING PROTEIN
gb|AAB58113.1| (U72682) transformer-2 protein isoform 272 [Drosophila virilis]
Length = 272
Score = 31.6 bits (70), Expect = 2.0
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = -3
Query: 424 RHNCSHQYISPNPQSSANDKHNSLEPRQKKRPIYSSFRKQNEAWLASHR*IFQATMLLPT 245
+H CSH + +P S+A+ + + R+ +Y S R N + HR ++ P
Sbjct: 21 KHKCSHSSATSSPSSAASSESSRTRQRRSDGEVYGS-RHNNYKSSSQHRRRSRSGSDSPQ 79
Query: 244 APHRSFRNPLPEDRM 200
H S R RM
Sbjct: 80 VRHYSGRTSRDRQRM 94
>pir||T37840 probable vacuolar protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAB16219.1| (Z99162) putative vacuolar protein [Schizosaccharomyces pombe]
Length = 536
Score = 31.6 bits (70), Expect = 2.0
Identities = 11/17 (64%), Positives = 13/17 (75%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RRR HCR+CG + CR C
Sbjct: 292 RRRRHCRLCGRVICRFC 308
>gb|AAF52609.1| (AE003620) CG8506 gene product [Drosophila melanogaster]
Length = 505
Score = 31.6 bits (70), Expect = 2.0
Identities = 11/17 (64%), Positives = 13/17 (75%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR+CGGI C C
Sbjct: 197 RRQHHCRLCGGIMCNDC 213
>pir||T49237 hypothetical protein F7K15.80 - Arabidopsis thaliana
emb|CAB89044.1| (AL353871) putative protein [Arabidopsis thaliana]
Length = 485
Score = 31.2 bits (69), Expect = 2.6
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +2
Query: 71 RCHCRVCGGIWCRVC 115
R HCR CGGI+CR C
Sbjct: 195 RHHCRFCGGIFCRNC 209
>gb|AAC46631.1| (U23545) Hk protein [Drosophila melanogaster]
Length = 546
Score = 31.2 bits (69), Expect = 2.6
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = -2
Query: 290 SVTSLDFPS---NDALTDSAPSKFSQSTA*RSDDFLTARRGVVDAANTRCQRLLSANFTT 120
+VTS++ P+ +DA P QST L A + T Q+L+ N
Sbjct: 73 AVTSIEMPTVVADDAGVPPLPLPLPQSTPQPLLMALPANLNFITGPTT--QQLMIGNGAM 130
Query: 119 DNIPCTKSHHRHDNDNAGADNPCEES 42
IP T + ++N+N DN +ES
Sbjct: 131 GVIPSTNDSNNNNNNNNNVDNTSDES 156
>gb|AAF46567.1| (AE003449) Hk gene product [Drosophila melanogaster]
Length = 548
Score = 31.2 bits (69), Expect = 2.6
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = -2
Query: 290 SVTSLDFPS---NDALTDSAPSKFSQSTA*RSDDFLTARRGVVDAANTRCQRLLSANFTT 120
+VTS++ P+ +DA P QST L A + T Q+L+ N
Sbjct: 73 AVTSIEMPTVVADDAGVPPLPLPLPQSTPQPLLMALPANLNFITGPTT--QQLMIGNGAM 130
Query: 119 DNIPCTKSHHRHDNDNAGADNPCEES 42
IP T + ++N+N DN +ES
Sbjct: 131 GVIPSTNDSNNNNNNNNNVDNTSDES 156
>gb|AAG10615.1|AC008030_15 (AC008030) Hypothetical protein [Arabidopsis thaliana]
Length = 469
Score = 31.2 bits (69), Expect = 2.6
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +2
Query: 71 RCHCRVCGGIWCRVC 115
R HCR CGGI+CR C
Sbjct: 211 RHHCRYCGGIFCRDC 225
>pir||T18961 FAB1 protein homolog VF11C1L.1 - Caenorhabditis elegans
emb|CAA91791.1| (Z67879) contains similarity to Pfam domain: PF01363 (FYVE zinc
finger), Score=60.7, E-value=3.4e-16, N=1; PF01504
(Phosphatidylinositol-4-phosphate 5-Kinase),
Score=-46.5, E-value=3.9e-08, N=1~cDNA EST yk88b11.5
comes from this gene~cDNA EST yk76b6.3 >
emb|CAA19436.1| (AL023817) contains similarity to Pfam domain: PF01363 (FYVE zinc
finger), Score=60.7, E-value=3.4e-16, N=1; PF01504
(Phosphatidylinositol-4-phosphate 5-Kinase),
Score=-46.5, E-value=3.9e-08, N=1~cDNA EST yk88b11.5
comes from this gene~cDNA EST yk76b6.>
Length = 1375
Score = 31.2 bits (69), Expect = 2.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVCYRS 124
RRR HCR+CG I+C C S
Sbjct: 20 RRRHHCRLCGQIFCAKCCSS 39
>pir||T40375 phosphatidylinositol-4-phosphate 5-kinase - fission yeast
(Schizosaccharomyces pombe) (fragment)
emb|CAA19005.1| (AL023534) fyve finger containing putative
phosphatidylinositol-4-phosphate 5-kinase
[Schizosaccharomyces pombe]
Length = 1337
Score = 30.8 bits (68), Expect = 3.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVCYR 121
RR+ HCR+CG I C+ C +
Sbjct: 77 RRKHHCRICGKIICKYCLK 95
>gb|AAF56679.1| (AE003759) CG6001 gene product [Drosophila melanogaster]
Length = 1351
Score = 30.4 bits (67), Expect = 4.4
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR CG I+C+ C
Sbjct: 880 RRKHHCRSCGEIFCKAC 896
>ref|NP_116674.1| type II PI(4)P5-kinase (PIP4,5 kinase) similar to human PIP5K-II;
Fab1p [Saccharomyces cerevisiae]
pir||S56274 FAB1 protein - yeast (Saccharomyces cerevisiae)
dbj|BAA09258.1| (D50617) FAB1 protein [Saccharomyces cerevisiae]
Length = 2278
Score = 30.4 bits (67), Expect = 4.4
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR+CG I+C C
Sbjct: 257 RRKHHCRICGQIFCSSC 273
>sp|P34756|FAB1_YEAST PROBABLE PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAB1
(1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE KINASE) (PIP5K)
(PTDINS(4)P-5-KINASE) (DIPHOSPHOINOSITIDE KINASE)
gb|AAA81360.1| (U01017) Fab1p [Saccharomyces cerevisiae]
Length = 2278
Score = 30.4 bits (67), Expect = 4.4
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR+CG I+C C
Sbjct: 257 RRKHHCRICGQIFCSSC 273
>ref|NP_071735.1| FYVE-finger-containing Rab5 effector protein rabenosyn-5 [Homo
sapiens]
gb|AAG33246.1| (AY009133) FYVE-finger-containing Rab5 effector protein Rabenosyn-5
[Homo sapiens]
Length = 784
Score = 30.4 bits (67), Expect = 4.4
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +2
Query: 62 QRRRCHCRVCGGIWCRVC 115
+ RR HCR+CG I C+ C
Sbjct: 173 RNRRHHCRLCGSIMCKKC 190
>dbj|BAB31910.1| (AK019909) putative [Mus musculus]
Length = 384
Score = 30.4 bits (67), Expect = 4.4
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +2
Query: 62 QRRRCHCRVCGGIWCRVC 115
+ RR HCR+CG I C+ C
Sbjct: 172 RNRRHHCRLCGSIMCKKC 189
>ref|NP_035216.1| phosphoinositide kinase, fyve-containing [Mus musculus]
sp|Q9Z1T6|FYV1_MOUSE FYVE FINGER-CONTAINING PHOSPHOINOSITIDE KINASE
(1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE KINASE) (PIP5K)
(PTDINS(4)P-5-KINASE) (P235)
pir||T18290 FYVE finger-containing phosphoinositide kinase - mouse
gb|AAD10191.1| (AF102777) FYVE finger-containing phosphoinositide kinase [Mus
musculus]
Length = 2052
Score = 30.4 bits (67), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (75%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RRR HCR+CG I+C C
Sbjct: 186 RRRHHCRLCGQIFCSRC 202
>dbj|BAB46907.1| (AB060914) hypothetical protein [Macaca fascicularis]
Length = 543
Score = 30.4 bits (67), Expect = 4.4
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +2
Query: 62 QRRRCHCRVCGGIWCRVC 115
+ RR HCR+CG I C+ C
Sbjct: 173 RNRRHHCRLCGSIMCKKC 190
>pir||T48578 hypothetical protein T31B5.130 - Arabidopsis thaliana
emb|CAB86638.1| (AL163491) putative protein [Arabidopsis thaliana]
Length = 370
Score = 30.0 bits (66), Expect = 5.8
Identities = 21/43 (48%), Positives = 30/43 (68%), Gaps = 11/43 (25%)
Frame = +1
Query: 136 DKRRWQR--------VLAASTTPRLAVRKSS--DLQAVDC-ENFDGALSVRASL 264
+KR W+R A+S L +K S DL+ +DC E+FDG S+RAS+
Sbjct: 57 EKREWKRDSYDRDEIPCASSFDELLKQQKPSEDDLKDIDCGEDFDGVWSIRASM 110
>gb|AAF64468.1|AF239997_1 (AF239997) smad anchor for receptor activation [Drosophila
melanogaster]
emb|CAC37791.1| (AJ310804) Smad Anchor for Receptor Activation [Drosophila
melanogaster]
Length = 1343
Score = 30.0 bits (66), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
+RR HCR CG + C VC
Sbjct: 548 KRRHHCRACGKVLCSVC 564
>gb|AAF46725.1| (AE003454) Sara gene product [Drosophila melanogaster]
Length = 1291
Score = 30.0 bits (66), Expect = 5.8
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
+RR HCR CG + C VC
Sbjct: 548 KRRHHCRACGKVLCSVC 564
>pir||T09358 hypothetical protein F23K16.50 - Arabidopsis thaliana
emb|CAB44677.1| (AL078620) hypothetical protein [Arabidopsis thaliana]
emb|CAB80605.1| (AL161595) hypothetical protein [Arabidopsis thaliana]
Length = 781
Score = 30.0 bits (66), Expect = 5.8
Identities = 19/64 (29%), Positives = 32/64 (49%)
Frame = +1
Query: 40 QLSSHGLSAPALSLSCLWWDLVQGMLSVVKLADKRRWQRVLAASTTPRLAVRKSSDLQAV 219
QLS AP++S +C +V D+R++++++ AS TP +A + L V
Sbjct: 434 QLSDFQNRAPSMSKTC-----------IVGSTDRRKFRKLIVASHTPLIAAVDENGLVYV 482
Query: 220 DCEN 231
C N
Sbjct: 483 LCVN 486
>sp|O06411|PIT_MYCTU PROBABLE LOW-AFFINITY INORGANIC PHOSPHATE TRANSPORTER
pir||D70547 probable pitA protein - Mycobacterium tuberculosis (strain H37RV)
emb|CAB08979.1| (Z95558) pitA [Mycobacterium tuberculosis]
Length = 417
Score = 29.6 bits (65), Expect = 7.6
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Frame = +3
Query: 147 LAASVGSVNDTTSCGQEVIRSSGSGL--RKLRWGAVGKSIVAWKI 275
L+A G TT + SG G ++RWG G+ +VAW +
Sbjct: 269 LSAHFGYALSTTQVATGSVLGSGVGKPGAEVRWGVAGRMVVAWLV 313
>gb|AAK44792.1| (AE006955) phosphate transport protein [Mycobacterium tuberculosis
CDC1551]
Length = 417
Score = 29.6 bits (65), Expect = 7.6
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Frame = +3
Query: 147 LAASVGSVNDTTSCGQEVIRSSGSGL--RKLRWGAVGKSIVAWKI 275
L+A G TT + SG G ++RWG G+ +VAW +
Sbjct: 269 LSAHFGYALSTTQVATGSVLGSGVGKPGAEVRWGVAGRMVVAWLV 313
>pir||T17457 SARA protein - African clawed frog
gb|AAC99463.1| (AF104305) Smad anchor for receptor activation [Xenopus laevis]
Length = 1235
Score = 29.6 bits (65), Expect = 7.6
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
+RR HCR CG ++C C
Sbjct: 537 KRRHHCRACGKVFCAAC 553
>pir||T25148 hypothetical protein VT23B5.2 - Caenorhabditis elegans
emb|CAB07677.1| (Z93390) contains similarity to Pfam domain: PF00400 (WD domain,
G-beta repeat), Score=38.1, E-value=6.5e-08, N=3; PF01363
(FYVE zinc finger), Score=115.4, E-value=1.3e-31, N=1;
PF02138 (Beige/BEACH domain), Score=773.7,
E-value=2.4e-229, N=1~cDNA EST >
emb|CAA21780.1| (AL032675) contains similarity to Pfam domain: PF00400 (WD domain,
G-beta repeat), Score=38.1, E-value=6.5e-08, N=3; PF01363
(FYVE zinc finger), Score=115.4, E-value=1.3e-31, N=1;
PF02138 (Beige/BEACH domain), Score=773.7,
E-value=2.4e-229, N=1~cDNA ES>
Length = 931
Score = 29.6 bits (65), Expect = 7.6
Identities = 18/42 (42%), Positives = 22/42 (51%), Gaps = 9/42 (21%)
Frame = +2
Query: 17 GRAYHHLTNSPHMGCQR---------RRCHCRVCGGIWCRVCYRS*SWQTR 142
GRA H + + C R+ HCR CG I+C C R S TR
Sbjct: 855 GRADHWVQDVTRQRCDDCEHKFTLADRKHHCRNCGQIFCSTCSRFESHITR 905
>pir||T13576 hypothetical protein 52C10.5 - fruit fly (Drosophila melanogaster)
emb|CAA22949.1| (AL035311) 1-evidence=predicted by
content~1-method=genefinder;084~1-method_score=133.73~1-
evidence_end~2-evidence=predicted by
match~2-match_accession=SWISS-PROT:P34756~2-
match_description=PROBABLE
PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAB1 (EC 2.>
Length = 1854
Score = 29.6 bits (65), Expect = 7.6
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR+CG I+C C
Sbjct: 243 RRKHHCRLCGQIFCSKC 259
>sp|P34185|TOP1_SYNP7 DNA TOPOISOMERASE I (OMEGA-PROTEIN) (RELAXING ENZYME) (UNTWISTING
ENZYME) (SWIVELASE)
pir||S32158 DNA topoisomerase (EC 5.99.1.2) - Synechococcus sp
emb|CAA51086.1| (X72391) Topoisomerase I [Synechococcus sp.]
Length = 839
Score = 29.6 bits (65), Expect = 7.6
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 430 CVRHNCSHQYISPNPQSSANDKHNSLEPRQKKRPIYSSFRKQNEAWLA 287
CV Y+SP P+ N+ E + RP ++FR E L+
Sbjct: 341 CVEQMYGKNYLSPQPRQFTTKSKNAQEAHEAIRPAGNTFRLPQETGLS 388
>pir||T33568 hypothetical protein R160.7 - Caenorhabditis elegans
gb|AAC68738.1| (AF099001) contains similarity to a vac1/fab1-type domain
[Caenorhabditis elegans]
Length = 658
Score = 29.6 bits (65), Expect = 7.6
Identities = 11/17 (64%), Positives = 12/17 (69%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RRR HCR CG I+C C
Sbjct: 583 RRRHHCRNCGRIFCHKC 599
>pir||T22532 hypothetical protein F53A2.8 - Caenorhabditis elegans
emb|CAB04456.1| (Z81546) contains similarity to Pfam domain: PF01363 (FYVE zinc
finger), Score=28.0, E-value=5.7e-07, N=1~cDNA EST
yk31h5.5 comes from this gene~cDNA EST yk194b11.3 comes
from this gene~cDNA EST yk416b6.3 comes from this
gene~cDNA EST yk194b11.5 comes >
Length = 676
Score = 29.6 bits (65), Expect = 7.6
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +2
Query: 68 RRCHCRVCGGIWCRVCYR 121
RR HC +CG I+CR C +
Sbjct: 643 RRIHCHLCGMIFCRRCLK 660
>pir||T24806 hypothetical protein T10G3.5 - Caenorhabditis elegans
emb|CAB03330.1| (Z81118) Similarity to Human endosomal protein P162 (TR:Q15075),
contains similarity to Pfam domain: PF01363 (FYVE zinc
finger), Score=113.9, E-value=3.4e-31, N=1~cDNA EST
EMBL:Z14487 comes from this gene~cDNA EST EMBL:Z14556
comes from this gene~cDNA >
Length = 1164
Score = 29.6 bits (65), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 68 RRCHCRVCGGIWCRVC 115
R+ HCRVCG I+C C
Sbjct: 1123 RKHHCRVCGKIYCNPC 1138
>gb|AAF48305.1| (AE003493) CG9941 gene product [Drosophila melanogaster]
Length = 789
Score = 29.6 bits (65), Expect = 7.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = -2
Query: 269 PSNDALTDSAPSKFSQSTA*RSDDFLTARRGVVDAANTRCQRLLSANFTTDN-------- 114
P D L K+ +STA D VD+ N + LLS + N
Sbjct: 517 PKQDKLQIVNERKYPRSTAGSGGDGSAGTDDDVDSENEKLSPLLSPGSKSKNVSSKSLKQ 576
Query: 113 -IPCTKSHHRHDNDNAGADNPCEES 42
+ C ++ DN ++ D P EES
Sbjct: 577 VVACLEADDDVDNKSSTGDGPTEES 601
>gb|AAK46387.1| (AE007061) polyketide synthase [Mycobacterium tuberculosis CDC1551]
Length = 4151
Score = 29.6 bits (65), Expect = 7.6
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +1
Query: 49 SHGLSAPALSLSCLWWDLVQGMLSVVKLADKRRWQR--VLAASTTPRLAVRKSSDLQAVD 222
+HGL PA+SL WD M + AD R R VLA ST L
Sbjct: 1844 AHGL--PAISLGWGLWDQASAMTGGLDAADLARLGREGVLALSTAEAL------------ 1889
Query: 223 CENFDGALSVRASLLGKSS-DVTLAKPHSAFETTSRSDVSS 342
E FD A+ V L + D+T + H+ SD++S
Sbjct: 1890 -ELFDTAMIVDEPFLAPARIDLTALRAHAVAVPPMFSDLAS 1929
>pir||G70944 probable polyketide synthase Rv2048c - Mycobacterium tuberculosis
(strain H37RV)
emb|CAA17262.1| (AL021899) pks12 [Mycobacterium tuberculosis]
Length = 4151
Score = 29.6 bits (65), Expect = 7.6
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +1
Query: 49 SHGLSAPALSLSCLWWDLVQGMLSVVKLADKRRWQR--VLAASTTPRLAVRKSSDLQAVD 222
+HGL PA+SL WD M + AD R R VLA ST L
Sbjct: 1844 AHGL--PAISLGWGLWDQASAMTGGLDAADLARLGREGVLALSTAEAL------------ 1889
Query: 223 CENFDGALSVRASLLGKSS-DVTLAKPHSAFETTSRSDVSS 342
E FD A+ V L + D+T + H+ SD++S
Sbjct: 1890 -ELFDTAMIVDEPFLAPARIDLTALRAHAVAVPPMFSDLAS 1929
>gb|AAF57789.1| (AE003802) EG:52C10.5 gene product [Drosophila melanogaster]
Length = 1809
Score = 29.6 bits (65), Expect = 7.6
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR+CG I+C C
Sbjct: 203 RRKHHCRLCGQIFCSKC 219
>ref|NP_078789.1| FYVE and coiled-coil domain containing 1; hypothetical protein
FLJ13335 [Homo sapiens]
emb|CAC33883.1| (AJ292348) FYVE and coiled-coil domain containing 1 [Homo sapiens]
Length = 1478
Score = 29.6 bits (65), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 68 RRCHCRVCGGIWCRVC 115
RR HCR+CG I+C C
Sbjct: 1191 RRHHCRICGRIFCYYC 1206
>ref|XP_016981.1| FYVE and coiled-coil domain containing 1 [Homo sapiens]
Length = 1478
Score = 29.6 bits (65), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 68 RRCHCRVCGGIWCRVC 115
RR HCR+CG I+C C
Sbjct: 1191 RRHHCRICGRIFCYYC 1206
>gb|AAK52089.1| (AY032860) EEA1 [Caenorhabditis elegans]
Length = 1205
Score = 29.6 bits (65), Expect = 7.6
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 68 RRCHCRVCGGIWCRVC 115
R+ HCRVCG I+C C
Sbjct: 1164 RKHHCRVCGKIYCNPC 1179
>dbj|BAA34514.1| (AB018337) KIAA0794 protein [Homo sapiens]
Length = 490
Score = 29.3 bits (64), Expect = 9.9
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +1
Query: 166 ASTTPRLAVRKSSDLQAVDCENFDGALSVRASLLGKSSDVTLAKPHSAFETTSRSDVSSG 345
+S+ P+ R S + A + + A +RASL D T K S + S S++ SG
Sbjct: 269 SSSPPKKCARSESLIDASEDSQLEAA--IRASLQETHFDSTQTKQDSRSDEESESELFSG 326
Query: 346 EVQESCVCRLRNSEDL 393
+ VC E++
Sbjct: 327 SEEFISVCGSDEEEEV 342
>ref|NP_079434.1| hypothetical protein FLJ22251 [Homo sapiens]
dbj|BAB15276.1| (AK025904) unnamed protein product [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 9.9
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR CG I+C C
Sbjct: 261 RRKHHCRNCGHIFCNTC 277
>pir||T37956 probable vacuolar protein sorting-associated protein - fission
yeast (Schizosaccharomyces pombe)
emb|CAB11641.1| (Z98974) putative vacuolar protein sorting-associated protein
[Schizosaccharomyces pombe]
Length = 610
Score = 29.3 bits (64), Expect = 9.9
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +2
Query: 68 RRCHCRVCGGIWCRVC 115
R+ HCR CGG++C C
Sbjct: 188 RKHHCRNCGGVFCNQC 203
>gb|AAK50771.1|AF361055_1 (AF361055) FYVE-finger protein EIP1 [Homo sapiens]
Length = 600
Score = 29.3 bits (64), Expect = 9.9
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR CG I+C C
Sbjct: 551 RRKHHCRNCGHIFCNTC 567
>emb|CAC17732.1| (AJ250024) FYVE-finger containing protein [Mus musculus]
Length = 600
Score = 29.3 bits (64), Expect = 9.9
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 65 RRRCHCRVCGGIWCRVC 115
RR+ HCR CG I+C C
Sbjct: 551 RRKHHCRNCGHIFCNTC 567
>gb|AAD03047.1| (AF098795) type I polyketide synthase; Cfa6 [Pseudomonas syringae]
Length = 2731
Score = 29.3 bits (64), Expect = 9.9
Identities = 16/38 (42%), Positives = 19/38 (49%)
Frame = +1
Query: 67 PALSLSCLWWDLVQGMLSVVKLADKRRWQRVLAASTTP 180
PA SL+ WW V G+ S + AD R R A TP
Sbjct: 2467 PATSLAWGWWQPVTGLSSRLTAADNARIARTGFAPITP 2504
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.315 0.127 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,900,197
Number of Sequences: 705144
Number of extensions: 3589656
Number of successful extensions: 11156
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 10834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11149
length of database: 222,175,239
effective HSP length: 107
effective length of database: 146,724,831
effective search space used: 5722268409
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)