Score E
Sequences producing significant alignments: (bits) Value
gb|AAF90187.1|AF280422_1 (AF280422) WD repeat protein [Ajel... 162 1e-39
pir||T39105 WD repeat protein - fission yeast (Schizosaccha... 87 8e-17
gb|AAF52654.1| (AE003621) CG17293 gene product [Drosophila ... 81 4e-15
ref|NP_012907.1| Ykl018wp [Saccharomyces cerevisiae] >gi|54... 80 1e-14
pir||T48626 hypothetical protein T15N1.20 - Arabidopsis tha... 74 5e-13
dbj|BAB10703.1| (AB022211) WD repeat protein-like [Arabidop... 58 4e-08
pir||T34139 hypothetical protein C33H5.7 - Caenorhabditis e... 58 4e-08
pir||T34140 hypothetical protein C33H5.6 - Caenorhabditis e... 58 4e-08
pir||T39770 trp-ast repeats containing protein - fission ye... 55 4e-07
gb|AAF51244.1| (AE003582) CG3515 gene product [Drosophila m... 44 0.001
gb|AAD27557.1|AF111710_3 (AF111710) hypothetical protein [O... 38 0.042
pir||T38992 WD-40 repeat regulatory protein tup1 - fission ... 38 0.055
gb|AAB81475.2| (U92792) general transcriptional repressor T... 38 0.055
emb|CAB66178.1| (AL136500) probable serine/threonine protei... 37 0.072
gb|AAC29438.1| (AF079369) transcriptional repressor TUP1 [D... 36 0.21
pir||T09687 chitinase (EC 3.2.1.14) class I - alfalfa >gi|1... 36 0.21
gb|AAG18891.1| (AE004991) Vng0310c [Halobacterium sp. NRC-1] 35 0.36
gb|AAG28504.1|AF197225_1 (AF197225) TUPA [Aspergillus nidul... 34 0.61
sp|Q00808|HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN HE... 34 0.61
pir||T08544 hypothetical protein F27B13.70 - Arabidopsis th... 34 0.61
ref|NP_062627.1| WSB-1 [Mus musculus] >gi|2766489|gb|AAB966... 33 1.0
gb|AAC46713.2| (U23176) Hypothetical protein F21H12.1 [Caen... 33 1.4
sp|Q09309|YQS1_CAEEL HYPOTHETICAL 54.2 KD TRP-ASP REPEATS C... 33 1.4
emb|CAA71402.1| (Y10373) chitinase [Medicago truncatula] 33 1.8
sp|P06215|CHIT_PHAVU ENDOCHITINASE PRECURSOR >gi|169331|gb|... 32 2.3
sp|P36361|CHI5_PHAVU ENDOCHITINASE CH5B PRECURSOR >gi|81866... 32 2.3
pir||T14773 hypothetical protein DKFZp564B0482.1 - human >g... 32 2.3
gb|AAD28807.1|AF072879_1 (AF072879) SOCS box-containing WD ... 32 2.3
gb|AAD28808.1|AF072880_1 (AF072880) SOCS box-containing WD ... 32 2.3
gb|AAG44736.1|AF268193_1 (AF268193) IRA1 [Homo sapiens] 32 3.9
ref|NP_109657.1| IRA1 protein [Mus musculus] >gi|12006108|g... 32 3.9
ref|NP_078941.1| hypothetical protein FLJ12894 [Homo sapien... 32 3.9
gb|AAK00301.1|AF314544_1 (AF314544) nuclear receptor co-rep... 32 3.9
gb|AAD43152.1|AC007504_7 (AC007504) Hypothetical Protein [A... 32 3.9
sp|Q9QZP1|GEM2_RAT SURVIVAL OF MOTOR NEURON PROTEIN-INTERAC... 32 3.9
dbj|BAB25083.1| (AK007515) putative [Mus musculus] >gi|1285... 32 3.9
ref|NP_079932.1| survivor of motor neuron protein interacti... 32 3.9
ref|NP_009984.1| regulatory protein; Pwp2p [Saccharomyces c... 31 5.1
emb|CAA10189.1| (AJ012821) class I chitinase [Cicer arietinum] 31 5.1
pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd4... 31 5.1
ref|NP_033495.1| Unc-51 like kinase 1 (C. elegans); Unc-51 ... 31 6.7
gb|AAC83164.1| (AF071310) OPA-containing protein 1 [Mus mus... 31 6.7
ref|NP_005638.1| transducin (beta)-like 1 [Homo sapiens] >g... 31 6.7
gb|AAG60193.1|AC084763_13 (AC084763) putative WD40 protein ... 30 8.8
ref|NP_104079.1| WD-repeart protein, beta transducin-like [... 30 8.8
ref|NP_005111.1| trinucleotide repeat containing 11 (THR-as... 30 8.8
sp|P49695|PKWA_THECU PUTATIVE SERINE/THREONINE-PROTEIN KINA... 30 8.8
pir||T37201 hypothetical protein F49D11.9 - Caenorhabditis ... 30 8.8
ref|NP_009757.1| Probable transcription-associated factor p... 30 8.8
gb|AAF24956.1|AC012375_19 (AC012375) T22C5.29 [Arabidopsis ... 30 8.8
ref|NP_003571.1| neutral sphingomyelinase (N-SMase) activat... 30 8.8
sp|Q93074|Y192_HUMAN HYPOTHETICAL PROTEIN KIAA0192 >gi|1663... 30 8.8
pir||T30341 zinc finger protein - African clawed frog >gi|1... 30 8.8
pir||T40831 probable guanine nucleotide-binding protein - f... 30 8.8
gb|AAH04354.1|AAH04354 (BC004354) trinucleotide repeat cont... 30 8.8
ref|NP_035075.1| neutral sphingomyelinase (N-SMase) activat... 30 8.8
sp|Q9QXE7|TBL1_MOUSE TRANSDUCIN BETA-LIKE 1 PROTEIN >gi|662... 30 8.8
>gb|AAF90187.1|AF280422_1 (AF280422) WD repeat protein [Ajellomyces capsulatus]
Length = 307
Score = 162 bits (410), Expect = 1e-39
Identities = 87/186 (46%), Positives = 109/186 (57%), Gaps = 2/186 (1%)
Frame = +2
Query: 17 GKLFLRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCL 196
GKL L +PYL A+DPSG+V A+A S+ +VLLYD RNYDK P AT D+ Q +
Sbjct: 126 GKLKLATPYLVAFDPSGSVIAIASQSTSSVLLYDFRNYDKPPCATFDLAAQEDRFTPSTR 185
Query: 197 NKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGD 376
+ WT LEFSNDGK LLVGT +GHFL+DAFEG +KA+L
Sbjct: 186 GRAWTRLEFSNDGKHLLVGTDYHGHFLLDAFEGNVKAFL--------------------- 224
Query: 377 TNHIESSGECCFAPDGRYVL--SGSKKDVLVWDTMAAPDDNKVLKPSWTLPDEREAAVLA 550
G+ CF PDGRYVL +G + D LVWDT PD + LKP++ LP + ++
Sbjct: 225 ------IGDVCFTPDGRYVLGSAGDQPDTLVWDTQHPPDSSLYLKPTFRLPYRARSVIVQ 278
Query: 551 FNPLYNFF 574
NP YN F
Sbjct: 279 ANPRYNMF 286
>pir||T39105 WD repeat protein - fission yeast (Schizosaccharomyces pombe)
emb|CAB57334.1| (AL121741) WD repeat protein. [Schizosaccharomyces pombe]
Length = 341
Score = 87.0 bits (214), Expect = 8e-17
Identities = 61/184 (33%), Positives = 92/184 (49%), Gaps = 11/184 (5%)
Frame = +2
Query: 17 GKLFLRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFA--TVDIVEQCRKVDSQ 190
G L L S + AYDP+G VFAVAC S + LYD RNY PF+ T+D +
Sbjct: 145 GNLDLPSLGIPAYDPTGLVFAVACHSLSRIFLYDVRNYGSDPFSTFTIDDSRYLSRFSFP 204
Query: 191 CLNKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAG 370
+ W +EFSNDGK +L+ TR N H+++DAF G + + L E Q
Sbjct: 205 PMMPEWKHMEFSNDGKCILLSTRANVHYILDAFSGDVLSRL-------------EDFQEL 251
Query: 371 GDTNHIESSGECCFAPDGRYVL-SGSKKDVLVWDT--------MAAPDDNKVLKPSWTLP 523
+N+ G F P G +V+ S + + VW+ P +++++ S P
Sbjct: 252 PFSNNFH-GGSTTFVPQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRIVSQSIINP 310
Query: 524 DEREAAVLAFNPLYN 568
++ +NP Y+
Sbjct: 311 -----GLVKYNPRYD 320
>gb|AAF52654.1| (AE003621) CG17293 gene product [Drosophila melanogaster]
Length = 317
Score = 81.3 bits (199), Expect = 4e-15
Identities = 63/187 (33%), Positives = 92/187 (48%), Gaps = 2/187 (1%)
Frame = +2
Query: 5 PTRPGKLFLRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVD 184
P G + L +AAYDP G +FA A V+S ++ LYD R++DK PF T + ++
Sbjct: 141 PNCQGLMHLSGRPIAAYDPEGLIFA-AGVNSESIKLYDLRSFDKGPFVTFKLNQE----- 194
Query: 185 SQCLNKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGT-LKAYLHKPNGGTRRLAVGEAA 361
+C WT L+FS DGK++L+ T G+ LVDAF GT L+ + PN +
Sbjct: 195 KEC---DWTGLKFSRDGKTILISTNGSVIRLVDAFHGTPLQTFTGYPNNKGIPI------ 245
Query: 362 QAGGDTNHIESSGECCFAPDGRYVLSGSKKD-VLVWDTMAAPDDNKVLKPSWTLPDEREA 538
E F+PD +++ SGS V +W+ A NKV + P +
Sbjct: 246 -------------EASFSPDSQFIFSGSTDGRVHIWN---ADTGNKVSVLNGDHPGPVQC 289
Query: 539 AVLAFNPLY 565
+ FNP Y
Sbjct: 290 --VQFNPKY 296
>ref|NP_012907.1| Ykl018wp [Saccharomyces cerevisiae]
sp|P36104|YKB8_YEAST HYPOTHETICAL 37.1 KDA TRP-ASP REPEATS CONTAINING PROTEIN IN
RAM2-ATP7 INTERGENIC REGION
pir||S37831 hypothetical protein YKL018w - yeast (Saccharomyces cerevisiae)
emb|CAA81853.1| (Z28018) ORF YKL018w [Saccharomyces cerevisiae]
Length = 329
Score = 79.7 bits (195), Expect = 1e-14
Identities = 62/179 (34%), Positives = 84/179 (46%), Gaps = 5/179 (2%)
Frame = +2
Query: 38 PYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCLNKGWTTL 217
P AYDPSG VFA+ + + LY+ + + PF + I + W L
Sbjct: 156 PNCIAYDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKI--------NDATFSQWNKL 207
Query: 218 EFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIESS 397
EFSN+GK LLVG+ H + DAF G L GTR + E S
Sbjct: 208 EFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELI----GTRAFPMRE----------FLDS 253
Query: 398 GECCFAPDGRYVLSGSKKD--VLVWDTMAAPDDNKVLKPSWTLP---DEREAAVLAFNPL 562
G CF PDG +VL G+ D + +W+ + NKVL+P +P E +AFNP
Sbjct: 254 GSACFTPDGEFVL-GTDYDGRIAIWN-HSDSISNKVLRPQGFIPCVSHETCPRSIAFNPK 311
Query: 563 YNFF 574
Y+ F
Sbjct: 312 YSMF 315
>pir||T48626 hypothetical protein T15N1.20 - Arabidopsis thaliana
emb|CAB87620.1| (AL163792) putative protein [Arabidopsis thaliana]
Length = 330
Score = 74.3 bits (181), Expect = 5e-13
Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Frame = +2
Query: 17 GKLFLRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCL 196
G L LR AYD G VFA+A + G V L+D+R YDK PF T + +V+
Sbjct: 150 GILHLRGRPAVAYDQQGLVFAIA-MEGGAVKLFDSRCYDKGPFDTFLVGGDTAEVND--- 205
Query: 197 NKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLK-AYLHKPNGGTRRLAVGEAAQAGG 373
++FSNDGKS+L+ T N +++DA+ G K + +P+ GT
Sbjct: 206 ------IKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEPSQGT------------- 246
Query: 374 DTNHIESSGECCFAPDGRYVLSGS 445
E F PDG+YVLSGS
Sbjct: 247 -------PIEATFTPDGKYVLSGS 263
>dbj|BAB10703.1| (AB022211) WD repeat protein-like [Arabidopsis thaliana]
Length = 328
Score = 58.2 bits (139), Expect = 4e-08
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Frame = +2
Query: 17 GKLFLRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCL 196
G L ++ AAYD G +FA+A G + ++DAR Y+K PF + + +
Sbjct: 153 GLLRVQGRPAAAYDDQGLIFAIAF--GGYIRMFDARMYEKGPFEIFSVGGDLSEAN---- 206
Query: 197 NKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGT-LKAYLHKPNGGTRRLAVGEAAQAGG 373
++FSNDG+ +L+ T ++D+F GT L + KP G
Sbjct: 207 -----VVKFSNDGRLMLLTTMDGFIHVLDSFRGTLLSTFSVKPVAG-------------- 247
Query: 374 DTNHIESSGECCFAPDGRYVLSGS 445
ES+ + F+P+G +V+SGS
Sbjct: 248 -----ESTLDAAFSPEGMFVVSGS 266
>pir||T34139 hypothetical protein C33H5.7 - Caenorhabditis elegans
gb|AAA82264.1| (U41007) similar to G beta repeats (PROSITE:PS00670)
[Caenorhabditis elegans]
Length = 326
Score = 58.2 bits (139), Expect = 4e-08
Identities = 34/101 (33%), Positives = 55/101 (53%)
Frame = +2
Query: 17 GKLFLRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCL 196
G + L + +A +DP G +FA A + + + LYD R++DK PF++ +E V+
Sbjct: 148 GLMNLSATPIATFDPEGLLFA-AGLDNNIIKLYDLRSFDKGPFSSFGPLENEDNVE---- 202
Query: 197 NKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHK 319
WT + FS GK +++ T + LVDAF G +K L +
Sbjct: 203 ---WTAMRFSPCGKYIMICTNSSQLLLVDAFTGLIKFTLEE 240
>pir||T34140 hypothetical protein C33H5.6 - Caenorhabditis elegans
gb|AAA82265.1| (U41007) similar to G beta repeats (PROSITE:PS00670)
[Caenorhabditis elegans]
Length = 248
Score = 58.2 bits (139), Expect = 4e-08
Identities = 35/86 (40%), Positives = 48/86 (55%)
Frame = +2
Query: 44 LAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCLNKGWTTLEF 223
L A+DP G +FAVA S T+ L+D R++D PF + I K D N W+ +EF
Sbjct: 157 LIAFDPDGILFAVA-TKSDTIKLFDMRSFDLGPFQSFIIT----KTD----NDEWSDIEF 207
Query: 224 SNDGKSLLVGTRGNGHFLVDAFEGTL 301
S GK +L+ T +DAF+GTL
Sbjct: 208 SPCGKFILISTTAGSVKWIDAFDGTL 233
>pir||T39770 trp-ast repeats containing protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA18403.1| (AL022304) trp-ast repeats containing protein [Schizosaccharomyces
pombe]
Length = 357
Score = 54.7 bits (130), Expect = 4e-07
Identities = 39/145 (26%), Positives = 66/145 (44%)
Frame = +2
Query: 5 PTRPGKLFLRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVD 184
P G L + SP +AA+D +G +FA + LY+ +++D PF + + V
Sbjct: 144 PNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVR 203
Query: 185 SQCLNKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQ 364
+EFS DGK LL+ T + H+++DA+ G+ L P+ V Q
Sbjct: 204 I-------ANVEFSTDGKYLLLTTGNDFHYVIDAYSGS--ELLRVPS------KVSTKTQ 248
Query: 365 AGGDTNHIESSGECCFAPDGRYVLS 439
G T + C +PD +++ +
Sbjct: 249 DGNLTYY----ASACMSPDSKFLFT 269
>gb|AAF51244.1| (AE003582) CG3515 gene product [Drosophila melanogaster]
Length = 386
Score = 43.5 bits (101), Expect = 0.001
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Frame = +2
Query: 29 LRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCLNKG- 205
LR P L A+DP G A + + G + + D R P RK Q K
Sbjct: 141 LRRP-LCAFDPEGLFLATSSGTEG-IQIRDVRMMGGEP---------SRKFVYQVNAKAN 189
Query: 206 WTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNH 385
WT L+F+ +GKSLL+ T + F V A +GT + G +N
Sbjct: 190 WTQLQFAPNGKSLLLSTDHSWCFSVSAIDGTYQ------------------QSFTGYSNK 231
Query: 386 IESSGECCFAPDGRYVLSGSKKD-VLVW 466
+ + + PD +++LSG+ K + +W
Sbjct: 232 LRLPLDATYTPDSQFILSGADKGRIHIW 259
>gb|AAD27557.1|AF111710_3 (AF111710) hypothetical protein [Oryza sativa subsp. indica]
Length = 789
Score = 38.1 bits (87), Expect = 0.042
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +2
Query: 215 LEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIES 394
++FSNDGKS+L+ T N +++DA+ GG +R + T
Sbjct: 690 IKFSNDGKSMLLTTTNNHIYVLDAY------------GGDKRCGFSLESSPNVAT----- 732
Query: 395 SGECCFAPDGRYVLS 439
E F PDG+YV+S
Sbjct: 733 --EAAFTPDGQYVIS 745
>pir||T38992 WD-40 repeat regulatory protein tup1 - fission yeast
(Schizosaccharomyces pombe)
emb|CAB52736.1| (AL109832) general transcriptional repressor tup1
[Schizosaccharomyces pombe]
Length = 586
Score = 37.7 bits (86), Expect = 0.055
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 20/86 (23%)
Frame = +2
Query: 212 TLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRL--AVGEAAQAGGDT-- 379
+L+FS DGK+L+ G+ L D G K LH +G T + G+ AG
Sbjct: 381 SLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKV 440
Query: 380 ---------------NHIESSGECCFAPDGRYVLSGSKKDVL-VWD 469
H ES F+PDG+Y++SGS + + +W+
Sbjct: 441 IRIWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWE 486
>gb|AAB81475.2| (U92792) general transcriptional repressor Tup1
[Schizosaccharomyces pombe]
Length = 561
Score = 37.7 bits (86), Expect = 0.055
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 20/86 (23%)
Frame = +2
Query: 212 TLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRL--AVGEAAQAGGDT-- 379
+L+FS DGK+L+ G+ L D G K LH +G T + G+ AG
Sbjct: 356 SLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKV 415
Query: 380 ---------------NHIESSGECCFAPDGRYVLSGSKKDVL-VWD 469
H ES F+PDG+Y++SGS + + +W+
Sbjct: 416 IRIWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWE 461
>emb|CAB66178.1| (AL136500) probable serine/threonine protein kinase. [Streptomyces
coelicolor A3(2)]
Length = 686
Score = 37.4 bits (85), Expect = 0.072
Identities = 44/179 (24%), Positives = 63/179 (34%), Gaps = 6/179 (3%)
Frame = +2
Query: 23 LFLRSPYLAAYDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCLNK 202
+F R A+ P G A G V L+DA RKV + + K
Sbjct: 356 IFARGTSGVAFSPDGETLATGG-QDGKVRLWDAAT---------------RKVRATLVEK 399
Query: 203 GW------TTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQ 364
GW + FS DGK+L+ T GT + V + A+
Sbjct: 400 GWYGPSRVVGVTFSADGKTLVTRT------------------------GTHLVGVWDVAR 435
Query: 365 AGGDTNHIESSGECCFAPDGRYVLSGSKKDVLVWDTMAAPDDNKVLKPSWTLPDEREAAV 544
ES+ +PDG+++ G +WD +D P L A
Sbjct: 436 RREVRRIEESAYSLALSPDGKWIALGDSAGANLWDLGRRGED-----PRAHLSQNLHATD 490
Query: 545 LAFNP 559
LAF+P
Sbjct: 491 LAFSP 495
Score = 33.1 bits (74), Expect = 1.4
Identities = 32/110 (29%), Positives = 44/110 (39%), Gaps = 1/110 (0%)
Frame = +2
Query: 221 FSNDGKSLLVGTRGNGHFLVDAFEGTLKAYL-HKPNGGTRRLAVGEAAQAGGDTNHIESS 397
FS DGK+L G +G G L DA G KA L HK + +
Sbjct: 551 FSPDGKTLATGGQGGGVRLWDAATGRPKATLTHK---------------------FVTEA 589
Query: 398 GECCFAPDGRYVLSGSKKDVLVWDTMAAPDDNKVLKPSWTLPDEREAAVLA 550
+ F+PDG T+A + +VL W L D + +A+LA
Sbjct: 590 RDLAFSPDG--------------STLAVTAEGRVL--LWNLADRKPSAILA 624
>gb|AAC29438.1| (AF079369) transcriptional repressor TUP1 [Dictyostelium
discoideum]
Length = 579
Score = 35.8 bits (81), Expect = 0.21
Identities = 27/85 (31%), Positives = 42/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 215 LEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIES 394
+ FSNDGK L G + A ++ + G + A + ++ GD +I S
Sbjct: 287 VNFSNDGKYLATGCNRS-------------AQIYDVDTGKKVHAFVDESEKDGDL-YIRS 332
Query: 395 SGECCFAPDGRYVLSGSK-KDVLVWD 469
CF+PDG Y+ +G++ K V VWD
Sbjct: 333 ---VCFSPDGNYLATGAEDKTVKVWD 355
>pir||T09687 chitinase (EC 3.2.1.14) class I - alfalfa
gb|AAB41324.1| (U83591) class I chitinase [Medicago sativa]
gb|AAB41325.1| (U83592) class I chitinase [Medicago sativa]
Length = 327
Score = 35.8 bits (81), Expect = 0.21
Identities = 22/60 (36%), Positives = 29/60 (47%)
Frame = +2
Query: 251 GTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIESSGECCFAPDGRY 430
G +G G + DAF KA+ + N G E A G T+H E++G APDG Y
Sbjct: 92 GCQGKGLYTYDAFISAAKAFPNFANNGDTATKKREIAAFLGQTSH-ETTGGWATAPDGPY 150
>gb|AAG18891.1| (AE004991) Vng0310c [Halobacterium sp. NRC-1]
Length = 387
Score = 35.0 bits (79), Expect = 0.36
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Frame = +2
Query: 101 TVLLYDA--RNYDKAPFATVDIVEQCRKVDSQCLNKGWTTLEFSNDGKSLLVGTRGNGHF 274
TV + DA R + AT+ +E+ D C++ G D + +LVG+ G F
Sbjct: 196 TVSVRDAADREHLALSTATITTIEEAGSADRVCVDTG----SLLADDEGMLVGSMSRGLF 251
Query: 275 LVDAFE---------------GTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIESSGECC 409
V A G + AY+ P+GGT+ LA +G + ++ G
Sbjct: 252 FVHAETAQSPYVAARPFRVNAGAVHAYVRTPDGGTKYLA---ELGSGDEVQVVDGDGRTR 308
Query: 410 FAPDGR 427
A GR
Sbjct: 309 SAVVGR 314
>gb|AAG28504.1|AF197225_1 (AF197225) TUPA [Aspergillus nidulans]
Length = 619
Score = 34.3 bits (77), Expect = 0.61
Identities = 27/85 (31%), Positives = 40/85 (46%), Gaps = 1/85 (1%)
Frame = +2
Query: 215 LEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIES 394
+ FS DGK L G + F+ TL G + E+ GD +I S
Sbjct: 310 VRFSRDGKYLATGCNRSAQI----FDVTL--------GQNVAVLQDESVDKSGDL-YIRS 356
Query: 395 SGECCFAPDGRYVLSGSK-KDVLVWD 469
CF+PDG+Y+ +G++ K + VWD
Sbjct: 357 ---VCFSPDGKYLATGAEDKQIRVWD 379
>sp|Q00808|HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1
pir||T18521 beta transducin-like protein - Podospora anserina
gb|AAA85775.1| (L28125) beta transducin-like protein [Podospora anserina]
Length = 1356
Score = 34.3 bits (77), Expect = 0.61
Identities = 31/90 (34%), Positives = 48/90 (52%), Gaps = 23/90 (25%)
Frame = +2
Query: 203 GWT-TLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAV---GEAAQAG 370
GW ++ FS DG+ + G+ + DA GT L G + +A G+ +G
Sbjct: 1136 GWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASG 1195
Query: 371 GDTNHIE----SSGEC--------------CFAPDGRYVLSGSKKDVL-VWDT 472
I+ +SG C F+PDG+ V SGS + + +WDT
Sbjct: 1196 SSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWDT 1248
Score = 31.2 bits (69), Expect = 5.1
Identities = 30/87 (34%), Positives = 48/87 (54%), Gaps = 23/87 (26%)
Frame = +2
Query: 212 TLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLH-----------KPNG-------GTR 337
++ FS DG+ + G+ + + DA GT L P+G G +
Sbjct: 930 SVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDK 989
Query: 338 RLAVGEAAQAGGDTNHIESSG----ECCFAPDGRYVLSGS-KKDVLVWDT 472
+ + + A +G T +E G F+PDG+ V SGS K + +WDT
Sbjct: 990 TIKIWDTA-SGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDT 1038
>pir||T08544 hypothetical protein F27B13.70 - Arabidopsis thaliana
emb|CAB43658.1| (AL050352) putative protein [Arabidopsis thaliana]
emb|CAB79741.1| (AL161575) putative protein [Arabidopsis thaliana]
Length = 321
Score = 34.3 bits (77), Expect = 0.61
Identities = 36/139 (25%), Positives = 63/139 (44%), Gaps = 23/139 (16%)
Frame = +2
Query: 53 YDPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCLNKGWTTLEFSND 232
++P GT+ AVA SS +V L+D ++ ++ + + D K ++ +S +
Sbjct: 110 FEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSKKFVLSVAWSPN 169
Query: 233 GKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVG----EAAQAGGDTNHI---E 391
GK L G+ + D L L N R L +G D H+ +
Sbjct: 170 GKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHD 229
Query: 392 SSGECCF---------------APDGRYVLSGSK-KDVLVWD 469
+ G+ +PDG + +GS + V +WD
Sbjct: 230 AEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWD 271
>ref|NP_062627.1| WSB-1 [Mus musculus]
gb|AAB96647.1| (AF033186) WSB-1 [Mus musculus]
Length = 421
Score = 33.5 bits (75), Expect = 1.0
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Frame = +2
Query: 185 SQCLNKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQ 364
S+C+N W F D L G + D + G L L
Sbjct: 124 SRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNL----------------- 166
Query: 365 AGGDTNHIESSGECCFAPDGRYVLSGSKKD--VLVWDTMAAPDDNKVLK 505
+HIE + FAPDG +L + +D + VWD DD ++K
Sbjct: 167 ----VDHIEMVRDLTFAPDGSLLLVSASRDKTLRVWD---LKDDGNMVK 208
>gb|AAC46713.2| (U23176) Hypothetical protein F21H12.1 [Caenorhabditis elegans]
Length = 514
Score = 33.1 bits (74), Expect = 1.4
Identities = 26/79 (32%), Positives = 37/79 (45%)
Frame = +2
Query: 65 GTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCLNKGWTTLEFSNDGKSL 244
G++ AV C + G VL+YD F T +I R + CL + L +S DG+ L
Sbjct: 37 GSIVAVGC-TDGRVLIYD--------FMTRNIA---RTFSAHCLPV--SCLSWSRDGRKL 82
Query: 245 LVGTRGNGHFLVDAFEGTL 301
L + N + D GTL
Sbjct: 83 LTSSADNSIAMFDVLAGTL 101
>sp|Q09309|YQS1_CAEEL HYPOTHETICAL 54.2 KD TRP-ASP REPEATS CONTAINING PROTEIN F21H12.1 IN
CHROMOSOME II
pir||T16130 hypothetical protein F21H12.1 - Caenorhabditis elegans
Length = 479
Score = 33.1 bits (74), Expect = 1.4
Identities = 26/79 (32%), Positives = 37/79 (45%)
Frame = +2
Query: 65 GTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCLNKGWTTLEFSNDGKSL 244
G++ AV C + G VL+YD F T +I R + CL + L +S DG+ L
Sbjct: 37 GSIVAVGC-TDGRVLIYD--------FMTRNIA---RTFSAHCLPV--SCLSWSRDGRKL 82
Query: 245 LVGTRGNGHFLVDAFEGTL 301
L + N + D GTL
Sbjct: 83 LTSSADNSIAMFDVLAGTL 101
>emb|CAA71402.1| (Y10373) chitinase [Medicago truncatula]
Length = 325
Score = 32.7 bits (73), Expect = 1.8
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 251 GTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIESSGECCFAPDGRY 430
G +G + DAF KA+ + N G E A G T+H E++G APDG Y
Sbjct: 89 GCQGKRLYTYDAFISAAKAFPNFANNGDTATKKREIAAFLGQTSH-ETTGGWATAPDGPY 147
>sp|P06215|CHIT_PHAVU ENDOCHITINASE PRECURSOR
gb|AAA33756.1| (M13968) chitinase (EC 3.2.1.14) [Phaseolus vulgaris]
Length = 328
Score = 32.3 bits (72), Expect = 2.3
Identities = 25/72 (34%), Positives = 30/72 (40%)
Frame = +2
Query: 215 LEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIES 394
L+ NDG G + DAF KAY N G E A G T+H E+
Sbjct: 89 LKHRNDG-----ACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSH-ET 142
Query: 395 SGECCFAPDGRY 430
+G APDG Y
Sbjct: 143 TGGWATAPDGPY 154
>sp|P36361|CHI5_PHAVU ENDOCHITINASE CH5B PRECURSOR
pir||JQ0965 chitinase (EC 3.2.1.14) precursor - kidney bean
gb|AAB23263.1| (S43926) chitinase [Phaseolus vulgaris=beans, cv Saxa, Peptide, 327
aa]
Length = 327
Score = 32.3 bits (72), Expect = 2.3
Identities = 25/72 (34%), Positives = 30/72 (40%)
Frame = +2
Query: 215 LEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIES 394
L+ NDG G + DAF KAY N G E A G T+H E+
Sbjct: 88 LKHRNDG-----ACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSH-ET 141
Query: 395 SGECCFAPDGRY 430
+G APDG Y
Sbjct: 142 TGGWATAPDGPY 153
>pir||T14773 hypothetical protein DKFZp564B0482.1 - human
emb|CAB53693.1| (AL110243) hypothetical protein [Homo sapiens]
gb|AAF17193.1|AF112205_1 (AF112205) WSB-1 protein [Homo sapiens]
Length = 421
Score = 32.3 bits (72), Expect = 2.3
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 2/107 (1%)
Frame = +2
Query: 185 SQCLNKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQ 364
S+C+N W F D L G + D + G L L
Sbjct: 124 SRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNL----------------- 166
Query: 365 AGGDTNHIESSGECCFAPDGRYVLSGSKKD--VLVWDTMAAPDDNKVLK 505
+H E + FAPDG +L + +D + VWD DD ++K
Sbjct: 167 ----VDHTEVVRDLTFAPDGSLILVSASRDKTLRVWD---LKDDGNMMK 208
>gb|AAD28807.1|AF072879_1 (AF072879) SOCS box-containing WD protein SWiP-1 [Gallus gallus]
Length = 421
Score = 32.3 bits (72), Expect = 2.3
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Frame = +2
Query: 185 SQCLNKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQ 364
S+C+N W +F D L G + D + G L L
Sbjct: 124 SRCVNIEWHRFKFGQDQLLLATGLNNGRIKIWDVYTGKLLLNL----------------- 166
Query: 365 AGGDTNHIESSGECCFAPDGRYVLSGSKKD--VLVWDTMAAPDDNKVLK 505
+H E + FAPDG +L + +D + VWD DD ++K
Sbjct: 167 ----MDHTEVVRDLTFAPDGSLILVSASRDKTLRVWD---LKDDGNMMK 208
>gb|AAD28808.1|AF072880_1 (AF072880) SOCS box-containing WD protein SWiP-1 [Homo sapiens]
gb|AAD20954.2| (AF069313) WSB1 protein [Homo sapiens]
Length = 421
Score = 32.3 bits (72), Expect = 2.3
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 2/107 (1%)
Frame = +2
Query: 185 SQCLNKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQ 364
S+C+N W F D L G + D + G L L
Sbjct: 124 SRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNL----------------- 166
Query: 365 AGGDTNHIESSGECCFAPDGRYVLSGSKKD--VLVWDTMAAPDDNKVLK 505
+H E + FAPDG +L + +D + VWD DD ++K
Sbjct: 167 ----VDHTEVVRDLTFAPDGSLILVSASRDKTLRVWD---LKDDGNMMK 208
>gb|AAG44736.1|AF268193_1 (AF268193) IRA1 [Homo sapiens]
Length = 514
Score = 31.6 bits (70), Expect = 3.9
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 377 TNHIESSGECCFAPDGRYVLSGS-KKDVLVWDT 472
T H E F+PDGRY+ SGS K V +W+T
Sbjct: 439 TKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNT 471
>ref|NP_109657.1| IRA1 protein [Mus musculus]
gb|AAG44738.1|AF268195_1 (AF268195) IRA1 [Mus musculus]
Length = 514
Score = 31.6 bits (70), Expect = 3.9
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 377 TNHIESSGECCFAPDGRYVLSGS-KKDVLVWDT 472
T H E F+PDGRY+ SGS K V +W+T
Sbjct: 439 TKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNT 471
>ref|NP_078941.1| hypothetical protein FLJ12894 [Homo sapiens]
dbj|BAB14331.1| (AK022956) unnamed protein product [Homo sapiens]
Length = 514
Score = 31.6 bits (70), Expect = 3.9
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 377 TNHIESSGECCFAPDGRYVLSGS-KKDVLVWDT 472
T H E F+PDGRY+ SGS K V +W+T
Sbjct: 439 TKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNT 471
>gb|AAK00301.1|AF314544_1 (AF314544) nuclear receptor co-repressor/HDAC3 complex subunit
TBLR1 [Homo sapiens]
Length = 514
Score = 31.6 bits (70), Expect = 3.9
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 377 TNHIESSGECCFAPDGRYVLSGS-KKDVLVWDT 472
T H E F+PDGRY+ SGS K V +W+T
Sbjct: 439 TKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNT 471
>gb|AAD43152.1|AC007504_7 (AC007504) Hypothetical Protein [Arabidopsis thaliana]
Length = 847
Score = 31.6 bits (70), Expect = 3.9
Identities = 20/69 (28%), Positives = 30/69 (42%)
Frame = -3
Query: 405 HSPLLSMWFVSPPACAASPTANRRVPPFGL*RYALSVPSKASTKKCPLPRVPTSSDLPSL 226
HSP ++ PP + PT N PP G P++A T +VPT S
Sbjct: 623 HSPPPPVYSPPPPTFSPPPTHNTNQPPMG-----APTPTQAPTPSSETTQVPTPSS--ES 675
Query: 225 ENSSVVHPL 199
+ S ++ P+
Sbjct: 676 DQSQILSPV 684
>sp|Q9QZP1|GEM2_RAT SURVIVAL OF MOTOR NEURON PROTEIN-INTERACTING PROTEIN 1
(SMN-INTERACTING PROTEIN 1) (COMPONENT OF GEMS 2)
(GEMIN2)
gb|AAD53287.1|AF176072_1 (AF176072) SMN-interacting protein 1 [Rattus norvegicus]
Length = 269
Score = 31.6 bits (70), Expect = 3.9
Identities = 22/56 (39%), Positives = 27/56 (47%)
Frame = -3
Query: 516 VQLGFNTLLSSGAAMVSQTKTSFLEPLRT*RPSGAKQHSPLLSMWFVSPPACAASP 349
VQ+GF LLS + M T TS LE L G + +P L WF + AC P
Sbjct: 161 VQVGFPPLLSIVSRMNQATITSVLEYLS--NWFGERDFTPELGRWFYALLACLEKP 214
>dbj|BAB25083.1| (AK007515) putative [Mus musculus]
dbj|BAB28842.1| (AK013414) putative [Mus musculus]
Length = 269
Score = 31.6 bits (70), Expect = 3.9
Identities = 22/56 (39%), Positives = 27/56 (47%)
Frame = -3
Query: 516 VQLGFNTLLSSGAAMVSQTKTSFLEPLRT*RPSGAKQHSPLLSMWFVSPPACAASP 349
VQ+GF LLS + M T TS LE L G + +P L WF + AC P
Sbjct: 161 VQVGFPPLLSIVSRMNQTTITSVLEYLS--NWFGERDFTPELGRWFYALLACLEKP 214
>ref|NP_079932.1| survivor of motor neuron protein interacting protein 1 [Mus
musculus]
dbj|BAB24321.1| (AK005928) putative [Mus musculus]
Length = 269
Score = 31.6 bits (70), Expect = 3.9
Identities = 22/56 (39%), Positives = 27/56 (47%)
Frame = -3
Query: 516 VQLGFNTLLSSGAAMVSQTKTSFLEPLRT*RPSGAKQHSPLLSMWFVSPPACAASP 349
VQ+GF LLS + M T TS LE L G + +P L WF + AC P
Sbjct: 161 VQVGFPPLLSIVSRMNQTTITSVLEYLS--NWFGERDFTPELGRWFYALLACLEKP 214
>ref|NP_009984.1| regulatory protein; Pwp2p [Saccharomyces cerevisiae]
sp|P25635|PWP2_YEAST PERIODIC TRYPTOPHAN PROTEIN 2
pir||S44226 periodic tryptophan protein PWP2 - yeast (Saccharomyces cerevisiae)
emb|CAA55558.1| (X78964) periodic tryptophan protein 2 [Saccharomyces cerevisiae]
emb|CAA42286.1| (X59720) YCR057c, len:923 [Saccharomyces cerevisiae]
Length = 923
Score = 31.2 bits (69), Expect = 5.1
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 20/94 (21%)
Frame = +2
Query: 215 LEFSNDGKSLL--VGTRGNGHFLVDAFEGTLKAYLHKPN--------GGTRRLAVGEAAQ 364
+ FS+DGK LL VG R + L++ T + Y H+ N GT +++ E +
Sbjct: 20 ITFSDDGKQLLSPVGNRVSVFDLINNKSFTFE-YEHRKNIAAIDLNKQGTLLISIDEDGR 78
Query: 365 A-------GGDTNHIESSGECC---FAPDGRYVLSGSKKDVLVWDTMAAPDDNK 496
A +H +C F+PDGR S + + +W T PD NK
Sbjct: 79 AILVNFKARNVLHHFNFKEKCSAVKFSPDGRLFALASGRFLQIWKT---PDVNK 129
>emb|CAA10189.1| (AJ012821) class I chitinase [Cicer arietinum]
Length = 328
Score = 31.2 bits (69), Expect = 5.1
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +2
Query: 251 GTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIESSGECCFAPDGRY 430
G G G + +AF K + N G E A G T+H E++G APDG Y
Sbjct: 89 GCEGKGFYTYEAFIAAAKYFPDLGNNGDTATKKREIAAFLGQTSH-ETTGGWSSAPDGPY 147
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.2 bits (69), Expect = 5.1
Identities = 21/85 (24%), Positives = 42/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 215 LEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHIES 394
++FSNDG+ L G + +G+L A L + + + + +I S
Sbjct: 70 VKFSNDGEYLATGCNKTTQ-VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128
Query: 395 SGECCFAPDGRYVLSGSKKDVL-VWD 469
CF+PDG+++ +G++ ++ +WD
Sbjct: 129 ---VCFSPDGKFLATGAEDRLIRIWD 151
>ref|NP_033495.1| Unc-51 like kinase 1 (C. elegans); Unc-51 like kinase 1 [Mus
musculus]
sp|O70405|ULK1_MOUSE SERINE/THREONINE-PROTEIN KINASE ULK1 (UNC-51-LIKE KINASE 1)
pir||JW0051 serine/threonine-specific protein kinase (EC 2.7.1.-) ULK1 - mouse
gb|AAC40118.1| (AF053756) UNC-51-like kinase ULK1 [Mus musculus]
gb|AAF23317.1|AF072370_1 (AF072370) UNC51.1 serine/threonine kinase [Mus musculus]
Length = 1051
Score = 30.8 bits (68), Expect = 6.7
Identities = 15/52 (28%), Positives = 26/52 (49%)
Frame = -3
Query: 369 PACAASPTANRRVPPFGL*RYALSVPSKASTKKCPLPRVPTSSDLPSLENSS 214
P C++SP+ + R PF RY SVP T+ R+ + P+ + ++
Sbjct: 406 PTCSSSPSPSGRPGPFSSNRYGASVPIPVPTQVHNYQRIEQNLQSPTQQQTA 457
>gb|AAC83164.1| (AF071310) OPA-containing protein 1 [Mus musculus]
Length = 2074
Score = 30.8 bits (68), Expect = 6.7
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 512 SLVSTLYYRQGQPWCPRPRRLSWSR*GHSGHLGQSSTRRYSRCGSYHRQ 366
S T YRQ QP P+ +RL G LGQSS + + SY Q
Sbjct: 1798 SSYKTSVYRQQQPTVPQGQRLRQQLQQSQGMLGQSSVHQMTPSSSYGLQ 1846
>ref|NP_005638.1| transducin (beta)-like 1 [Homo sapiens]
ref|XP_010334.1| transducin (beta)-like 1 [Homo sapiens]
sp|O60907|TBL1_HUMAN TRANSDUCIN BETA-LIKE 1 PROTEIN
emb|CAA73319.1| (Y12781) transducin (beta) like 1 protein [Homo sapiens]
Length = 577
Score = 30.8 bits (68), Expect = 6.7
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 377 TNHIESSGECCFAPDGRYVLSGS-KKDVLVWDTMA 478
T H E F+PDG+Y+ SGS K V +W+T +
Sbjct: 502 TKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQS 536
>gb|AAG60193.1|AC084763_13 (AC084763) putative WD40 protein [Oryza sativa]
Length = 470
Score = 30.4 bits (67), Expect = 8.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 377 TNHIESSGECCFAPDGRYVLSGSKKDVLVWDTMA 478
T + +G CCF+PDGRY+ ++V D ++
Sbjct: 4 TEAYKQTGPCCFSPDGRYLAVAVDYRLVVRDVVS 37
>ref|NP_104079.1| WD-repeart protein, beta transducin-like [Mesorhizobium loti]
dbj|BAB49865.1| (AP003000) WD-repeart protein, beta transducin-like [Mesorhizobium
loti]
Length = 1430
Score = 30.4 bits (67), Expect = 8.8
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Frame = +2
Query: 209 TTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQAGGDTNHI 388
T + FS DG+SLL +R + T++ + +GG R A G ++ +
Sbjct: 1275 TVVAFSPDGQSLLTASR----------DRTVRIW--SVSGGLER------AVLRGHSSAV 1316
Query: 389 ESSGECCFAPDGRYVLSGSKKD--VLVWDTMA-------APDDNKVLKPSWT 517
+S+ F+P+G Y+++ S +D V +W T + A D ++PS T
Sbjct: 1317 DSAQ---FSPNGLYLVTASSEDRTVRLWATQSGRQIAVLASQDEATVRPSLT 1365
>ref|NP_005111.1| trinucleotide repeat containing 11 (THR-associated protein, 230 kDa
subunit); thyroid hormone receptor-associated protein,
230 kDa subunit [Homo sapiens]
gb|AAD22033.1| (AF117755) thyroid hormone receptor-associated protein complex
component TRAP230 [Homo sapiens]
Length = 2212
Score = 30.4 bits (67), Expect = 8.8
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 512 SLVSTLYYRQGQPWCPRPRRLSWSR*GHSGHLGQSSTRRYSRCGSYHRQ 366
S T YRQ QP P+ +RL G LGQSS + + SY Q
Sbjct: 1926 SSYKTSVYRQQQPAVPQGQRLRQQLQQSQGMLGQSSVHQMTPSSSYGLQ 1974
>sp|P49695|PKWA_THECU PUTATIVE SERINE/THREONINE-PROTEIN KINASE PKWA
gb|AAB05822.1| (AF115313) PkwA [Thermomonospora curvata]
Length = 742
Score = 30.4 bits (67), Expect = 8.8
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Frame = +2
Query: 260 GNGHFLVD-AFEGTLKAYLHKPNGGTRRL---AVG-EAAQAGGDTNHIESSGECCFAPDG 424
G+ H+++D AF GT RL A G E A G T+++ + F+PDG
Sbjct: 541 GHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYA---VAFSPDG 597
Query: 425 RYVLSGSKKDVL-VWDTMAAPDDNKVLKPSWTLPDEREAAVLAFNP 559
V SGS+ + +WD + + + P+ LAF+P
Sbjct: 598 SMVASGSRDGTIRLWDVATGKERDVLQAPA------ENVVSLAFSP 637
>pir||T37201 hypothetical protein F49D11.9 - Caenorhabditis elegans
gb|AAB96714.1| (AF039711) contains similarity to Physcomitrella patens
glyceraldehyde 3-phosphate dehydrogenase (GB:X72381)
[Caenorhabditis elegans]
Length = 1017
Score = 30.4 bits (67), Expect = 8.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 410 FAPDGRYVLSGSKKDVLVWDTM 475
FA DGR+++ +KK V+ WDT+
Sbjct: 838 FAADGRHLIISTKKGVVCWDTL 859
>ref|NP_009757.1| Probable transcription-associated factor protein, probable
-transducin type; Taf90p [Saccharomyces cerevisiae]
sp|P38129|T2D4_YEAST TRANSCRIPTION INITIATION FACTOR TFIID 90 KD SUBUNIT (TAFII-90)
pir||S34023 TATA box-binding protein-associated factor chain TAFII90 - yeast
(Saccharomyces cerevisiae)
emb|CAA79685.1| (Z21487) unknown [Saccharomyces cerevisiae]
emb|CAA85160.1| (Z36067) ORF YBR198c [Saccharomyces cerevisiae]
prf||2020425A TATA box-binding protein-associated factor [Saccharomyces
cerevisiae]
Length = 798
Score = 30.4 bits (67), Expect = 8.8
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Frame = +2
Query: 188 QCLNKGWTTLEFSNDGKSLLVGTRGNGHFLVDAFEGTLKAYLHKPNGGTRRLAVGEAAQA 367
Q NK + L+FS+D + G + + + + + +G+ L+ PN E
Sbjct: 463 QNTNKDMSCLDFSDDCRIAAAGFQ-DSYIKIWSLDGSS---LNNPNIALNNNDKDEDPTC 518
Query: 368 GGDTNHIESSGECCFAPDGRYVLSGSK-KDVLVW--DTMAAPDDNKVLK-PSWTLPDERE 535
H + F+PD +Y+LSGS+ K V +W DT A K P W
Sbjct: 519 KTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWD------ 572
Query: 536 AAVLAFNPLYNFF 574
++F+PL ++F
Sbjct: 573 ---VSFSPLGHYF 582
>gb|AAF24956.1|AC012375_19 (AC012375) T22C5.29 [Arabidopsis thaliana]
gb|AAG50578.1|AC079280_9 (AC079280) hypothetical protein [Arabidopsis thaliana]
Length = 179
Score = 30.4 bits (67), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 383 HIESSGECCF-APDGRYVLSGSKKDVLVWDTMAAPDDNKV 499
H ES CCF + D SGS + +LVW +D V
Sbjct: 127 HYESVNTCCFNSNDQELYTSGSDRQILVWSPGGTVEDEMV 166
>ref|NP_003571.1| neutral sphingomyelinase (N-SMase) activation associated factor
[Homo sapiens]
sp|Q92636|FAN_HUMAN PROTEIN FAN (FACTOR ASSOCIATED WITH N-SMASE ACTIVATION) (FACTOR
ASSOCIATED WITH NEUTRAL-SPHINGOMYELINASE ACTIVATION)
emb|CAA65405.1| (X96586) FAN protein [Homo sapiens]
Length = 917
Score = 30.4 bits (67), Expect = 8.8
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 401 ECCFAPDGRYVLSGSKK-DVLVWDTMAAPDDNKV 499
+ CF DG VLSGS+ ++LVWD + A ++
Sbjct: 849 QTCFVWDGNSVLSGSQSGELLVWDLLGAKISERI 882
>sp|Q93074|Y192_HUMAN HYPOTHETICAL PROTEIN KIAA0192
dbj|BAA12112.1| (D83783) Product has a CAG repeat region similar to mouse mopa box
protein. It also retains the DNA topoisomerase II motif
and a transmembrane domain at N-terminal region.;
expressed ubiquitously [Homo sapiens]
Length = 2124
Score = 30.4 bits (67), Expect = 8.8
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 512 SLVSTLYYRQGQPWCPRPRRLSWSR*GHSGHLGQSSTRRYSRCGSYHRQ 366
S T YRQ QP P+ +RL G LGQSS + + SY Q
Sbjct: 1838 SSYKTSVYRQQQPAVPQGQRLRQQLQQSQGMLGQSSVHQMTPSSSYGLQ 1886
>pir||T30341 zinc finger protein - African clawed frog
gb|AAC42233.1| (L46583) zinc finger protein [Xenopus laevis]
Length = 1350
Score = 30.4 bits (67), Expect = 8.8
Identities = 37/117 (31%), Positives = 53/117 (44%), Gaps = 6/117 (5%)
Frame = -3
Query: 417 GAKQHSPLLSMWFVSPPACAASPTANRRVPPFGL*RYALSVPSKASTKK--CPLPRVPTS 244
G HS L + V PP + P + P F ++ PS AST CP+ VPT
Sbjct: 284 GFAAHSTL-QLTSVVPPTLSG-PATSGLPPSFENPQHMSQPPSGASTPNIPCPVSSVPTE 341
Query: 243 SDLPSLEN---SSVVHPLLRHCESTFLHCSTMST-VAKGALS*FRAS*SRTVPLLTQATA 76
S + N SS L + S H + ST + G + +S S PLL Q+++
Sbjct: 342 STISLSTNSKASSAAPSSLSNSTSNPTHPQSSSTPPSLGHGNILNSSSSLPSPLLPQSSS 401
Query: 75 KTV 67
+V
Sbjct: 402 NSV 404
>pir||T40831 probable guanine nucleotide-binding protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA18997.1| (AL023518) similar to guanine nucleotide-binding protein
[Schizosaccharomyces pombe]
Length = 399
Score = 30.4 bits (67), Expect = 8.8
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 56 DPSGTVFAVACVSSGTVLLYDARNYDKAPFATVDIVEQCRKVDSQCLNKGWTTLEFSNDG 235
DPS +FAV+ L+ +KA + +D Q R S CL +F+NDG
Sbjct: 117 DPSSNLFAVSSRDQPIKLINFTTGKNKASYHMID--HQERYQGSHCL-------QFTNDG 167
Query: 236 KSLLVGTRGNGH 271
+ L+ G + H
Sbjct: 168 EYLIAGDKNCLH 179
>gb|AAH04354.1|AAH04354 (BC004354) trinucleotide repeat containing 11 (THR-associated
protein, 230 kDa subunit) [Homo sapiens]
Length = 649
Score = 30.4 bits (67), Expect = 8.8
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 512 SLVSTLYYRQGQPWCPRPRRLSWSR*GHSGHLGQSSTRRYSRCGSYHRQ 366
S T YRQ QP P+ +RL G LGQSS + + SY Q
Sbjct: 363 SSYKTSVYRQQQPAVPQGQRLRQQLQQSQGMLGQSSVHQMTPSSSYGLQ 411
>ref|NP_035075.1| neutral sphingomyelinase (N-SMase) activation associated factor;
factor associated with N-SMase activation [Mus musculus]
sp|O35242|FAN_MOUSE PROTEIN FAN (FACTOR ASSOCIATED WITH N-SMASE ACTIVATION) (FACTOR
ASSOCIATED WITH NEUTRAL-SPHINGOMYELINASE ACTIVATION)
gb|AAB65394.1| (AF013632) FAN protein [Mus musculus]
Length = 920
Score = 30.4 bits (67), Expect = 8.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 407 CFAPDGRYVLSGSKK-DVLVWDTMAAPDDNKV 499
CF DG VLSGS+ ++LVWD + A ++
Sbjct: 854 CFVWDGNSVLSGSRSGELLVWDLLGAKVSERI 885
>sp|Q9QXE7|TBL1_MOUSE TRANSDUCIN BETA-LIKE 1 PROTEIN
emb|CAB61534.1| (F38006) transducin beta like 1 [Mus musculus]
Length = 313
Score = 30.4 bits (67), Expect = 8.8
Identities = 15/32 (46%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
Frame = +2
Query: 377 TNHIESSGECCFAPDGRYVLSGS-KKDVLVWDT 472
T H E F+PDG+Y+ SGS K V +W+T
Sbjct: 251 TKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNT 283
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,156,407
Number of Sequences: 705144
Number of extensions: 5440982
Number of successful extensions: 17089
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 16164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17026
length of database: 222,175,239
effective HSP length: 112
effective length of database: 143,199,111
effective search space used: 11312729769
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)