Score E
Sequences producing significant alignments: (bits) Value
emb|CAC27452.1| (AJ297887) DigA protein [Aspergillus nidulans] 179 5e-45
dbj|BAA95999.1| (AB040908) KIAA1475 protein [Homo sapiens] 94 1e-19
gb|AAG34679.1|AF308802_1 (AF308802) vacuolar protein sortin... 94 1e-19
gb|AAF88074.1|AC025417_2 (AC025417) T12C24.2 [Arabidopsis t... 72 6e-13
gb|AAF79641.1|AC025416_15 (AC025416) F5O11.22 [Arabidopsis ... 72 6e-13
ref|NP_013249.1| vacuolar membrane protein; Pep3p [Saccharo... 69 9e-12
gb|AAF45652.1| (AE003421) dor gene product [Drosophila mela... 65 1e-10
pir||S54252 deep orange protein - fruit fly (Drosophila mel... 65 1e-10
sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN >gi|2832850|emb|CAA... 64 2e-10
gb|AAC46819.2| (U23522) similar to vacuolar membrane protei... 59 5e-09
pir||T34481 hypothetical protein W06B4.3 - Caenorhabditis e... 59 5e-09
pir||T41607 probable vacuolar membrane protein - fission ye... 57 2e-08
emb|CAB91628.1| (AJ289080) Vps18 protein [Candida albicans] 45 1e-04
gb|AAK40566.1| (AE006659) DNA-directed RNA polymerase, subu... 35 0.11
emb|CAB95611.1| (AL359782) hypothetical protein, CHR1.386 [... 34 0.18
gb|AAF54693.1| (AE003692) CG6923 gene product [Drosophila m... 33 0.31
dbj|BAB08428.1| (AB017067) gb|AAF32311.1~gene_id:MJC20.5~si... 33 0.41
ref|NP_055463.1| KIAA0675 gene product [Homo sapiens] >gi|7... 33 0.53
dbj|BAB22082.1| (AK002414) putative [Mus musculus] 32 0.69
pir||E72520 hypothetical protein APE2138 - Aeropyrum pernix... 32 0.69
emb|CAA11444.1| (AJ223577) intermediate filament protein C1... 32 0.91
ref|NP_111000.1| Uncharacterized conserved protein [Thermop... 32 1.2
sp|Q10322|DMA1_SCHPO DMA1 PROTEIN >gi|7490447|pir||T37862 d... 32 1.2
gb|AAF58107.2| (AE003809) CG8242 gene product [Drosophila m... 31 1.5
gb|AAH01657.1|AAH01657 (BC001657) Unknown (protein for IMAG... 31 2.0
gb|AAK38349.1| (AY030283) PHD zinc finger transcription fac... 31 2.0
gb|AAD22654.1|AC007138_18 (AC007138) putative CHP-rich zinc... 30 2.6
pir||T00600 hypothetical protein T8K22.6 - Arabidopsis thal... 30 3.4
pir||T00603 hypothetical protein T8K22.9 - Arabidopsis thal... 30 3.4
dbj|BAB27445.1| (AK011171) putative [Mus musculus] 30 4.5
gb|AAB71964.1| (AC002292) Hypothetical protein [Arabidopsis... 30 4.5
dbj|BAB22071.1| (AK002399) putative [Mus musculus] 30 4.5
pir||T03835 vacA protein - slime mold (Dictyostelium discoi... 30 4.5
gb|AAF81249.1|AF267753_1 (AF267753) putative potassium chan... 30 4.5
sp|P15350|RPA1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT A'... 30 4.5
pir||A33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain ... 30 4.5
ref|NP_073618.1| hypothetical protein FLJ21343 [Homo sapien... 29 5.9
ref|NP_066681.1| similar to ardC gene in pSa(IncW plasmid) ... 29 5.9
dbj|BAB01306.1| (AB025631) gene_id:MPN9.16~unknown protein ... 29 5.9
gb|AAC58817.1| (U84793) envelope glycoprotein [Human immuno... 29 5.9
dbj|BAB24549.1| (AK006367) putative [Mus musculus] 29 5.9
gb|AAD20403.1| (AC007019) unknown protein [Arabidopsis thal... 29 5.9
pir||S39006 zygote-specific protein (clone pZS102-2) - Chla... 29 5.9
pir||S36918 zygote-specific protein (clone pZS102-69) - Chl... 29 5.9
pir||T38478 RhoGAP/LIM domain protein - fission yeast (Sch... 29 7.7
pir||B33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain ... 29 7.7
sp|P11512|RPA1_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT A'... 29 7.7
pir||T12177 potassium channel protein - fava bean (fragment... 29 7.7
gb|AAG51882.1|AC016162_3 (AC016162) c-Jun coactivator-like ... 29 7.7
gb|AAC36343.1| (AF087412) AJH2 [Arabidopsis thaliana] 29 7.7
emb|CAB90157.1| (AL355013) putative vacuolar biogenesis pro... 29 7.7
pir||T45654 zinc-finger-like protein - Arabidopsis thaliana... 29 7.7
>emb|CAC27452.1| (AJ297887) DigA protein [Aspergillus nidulans]
Length = 963
Score = 179 bits (453), Expect = 5e-45
Identities = 86/126 (68%), Positives = 103/126 (81%)
Frame = +1
Query: 16 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAG 195
TA I+ +IAALD RYAIVEPGEKC+TC LP+LSRQFFVFPCQH+FHSDCLGR+VLE AG
Sbjct: 839 TARQIRSEIAALDTRYAIVEPGEKCWTCSLPVLSRQFFVFPCQHAFHSDCLGREVLEGAG 898
Query: 196 VGKSSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAIKRIDEPFITHNDN 375
GK IR+LQ Q+ +G ++ +QRE VV ELD L+A +CILC D AIK+ID+PFIT DN
Sbjct: 899 -GKKKYIRDLQSQLNEGALTSSQREEVVKELDGLIAEACILCGDHAIKQIDKPFITATDN 957
Query: 376 VNEWIL 393
V+EW L
Sbjct: 958 VDEWCL 963
>dbj|BAA95999.1| (AB040908) KIAA1475 protein [Homo sapiens]
Length = 986
Score = 94.4 bits (233), Expect = 1e-19
Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 17/115 (14%)
Frame = +1
Query: 16 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAG 195
+A I+ D+ L RY VEP +KC TC PLL+R F++F C H FH+DCL + V
Sbjct: 842 SAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLP 901
Query: 196 VGKSSRIRELQMQI------QKG-----------LVSGTQRETVVAELDALVASSCILCS 324
K +R+ ELQ ++ KG +G RE + A+LD LVA+ C+ C
Sbjct: 902 AYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCG 961
Query: 325 DLAIKRIDEPFI 360
+L I+ ID PFI
Sbjct: 962 ELMIRSIDRPFI 973
>gb|AAG34679.1|AF308802_1 (AF308802) vacuolar protein sorting protein 18 [Homo sapiens]
Length = 973
Score = 94.4 bits (233), Expect = 1e-19
Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 17/115 (14%)
Frame = +1
Query: 16 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAG 195
+A I+ D+ L RY VEP +KC TC PLL+R F++F C H FH+DCL + V
Sbjct: 829 SAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLP 888
Query: 196 VGKSSRIRELQMQI------QKG-----------LVSGTQRETVVAELDALVASSCILCS 324
K +R+ ELQ ++ KG +G RE + A+LD LVA+ C+ C
Sbjct: 889 AYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCG 948
Query: 325 DLAIKRIDEPFI 360
+L I+ ID PFI
Sbjct: 949 ELMIRSIDRPFI 960
>gb|AAF88074.1|AC025417_2 (AC025417) T12C24.2 [Arabidopsis thaliana]
Length = 1010
Score = 72.4 bits (176), Expect = 6e-13
Identities = 47/119 (39%), Positives = 68/119 (56%), Gaps = 33/119 (27%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQ-----------------FFVFPCQH 147
A NI+ DI+AL RYA+++ E+C C +L F+VFPC H
Sbjct: 835 ADNIRNDISALTQRYAVIDRDEECGVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGH 894
Query: 148 SFHSDCLGRKVLEQAGVGKSSRIRELQMQI----------------QKGLVSGTQRETVV 279
SFH+ CL V A ++ I +LQ Q+ + + S T + +
Sbjct: 895 SFHAQCLITHVTSCAHEEQAEHILDLQKQLTLLGSETRRDINGNRSDEPITSTTTADKLR 954
Query: 280 AELDALVASSCILCSDLAIKRIDEPFITHNDN 375
+ELD +AS C C +L I I PFI D+
Sbjct: 955 SELDDAIASECPFCGELMINEITLPFIKPEDS 986
>gb|AAF79641.1|AC025416_15 (AC025416) F5O11.22 [Arabidopsis thaliana]
Length = 1063
Score = 72.4 bits (176), Expect = 6e-13
Identities = 47/119 (39%), Positives = 68/119 (56%), Gaps = 33/119 (27%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQ-----------------FFVFPCQH 147
A NI+ DI+AL RYA+++ E+C C +L F+VFPC H
Sbjct: 888 ADNIRNDISALTQRYAVIDRDEECGVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGH 947
Query: 148 SFHSDCLGRKVLEQAGVGKSSRIRELQMQI----------------QKGLVSGTQRETVV 279
SFH+ CL V A ++ I +LQ Q+ + + S T + +
Sbjct: 948 SFHAQCLITHVTSCAHEEQAEHILDLQKQLTLLGSETRRDINGNRSDEPITSTTTADKLR 1007
Query: 280 AELDALVASSCILCSDLAIKRIDEPFITHNDN 375
+ELD +AS C C +L I I PFI D+
Sbjct: 1008 SELDDAIASECPFCGELMINEITLPFIKPEDS 1039
>ref|NP_013249.1| vacuolar membrane protein; Pep3p [Saccharomyces cerevisiae]
sp|P27801|PEP3_YEAST VACUOLAR MEMBRANE PROTEIN PEP3
pir||A41943 vacuolar membrane protein PEP3 - yeast (Saccharomyces cerevisiae)
gb|AAA34852.1| (M65144) PEP3 [Saccharomyces cerevisiae]
gb|AAB82382.1| (U53879) Pep3p: Vacuolar membrane protein [Saccharomyces cerevisiae]
emb|CAA97720.1| (Z73320) ORF YLR148w [Saccharomyces cerevisiae]
Length = 918
Score = 68.6 bits (166), Expect = 9e-12
Identities = 36/120 (30%), Positives = 63/120 (52%)
Frame = +1
Query: 28 IKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKS 207
I +I+ + Y I+EPG+ C CG L ++F VFPC H FH +C+ R +L +
Sbjct: 806 INTEISKFNEIYRILEPGKSCDECGKFLQIKKFIVFPCGHCFHWNCIIRVIL-------N 858
Query: 208 SRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAIKRIDEPFITHNDNVNEW 387
S L+ + + L + ++ + +L+ ++ C LCSD+ I +ID+P + +W
Sbjct: 859 SNDYNLRQKTENFLKAKSKHN--LNDLENIIVEKCGLCSDININKIDQPISIDETELAKW 916
>gb|AAF45652.1| (AE003421) dor gene product [Drosophila melanogaster]
Length = 1002
Score = 65.1 bits (157), Expect = 1e-10
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Frame = +1
Query: 7 TRPTATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLE 186
T + ++ L VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 858 TTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVP 917
Query: 187 QAGVGKSSRIRELQMQI----------QKGLVSGTQ-------RETVVAELDALVASSCI 315
+ R+ L+ Q+ Q G +S Q R + E++ ++A+ C+
Sbjct: 918 LLTKEQCRRLGTLKQQLEAEVQTQAQPQSGALSKQQAMELQRKRAALKTEIEDILAADCL 977
Query: 316 LCSDLAIKRIDEPFITHNDNVN-EW 387
C L I ID+PF+ + VN EW
Sbjct: 978 FCG-LLISTIDQPFVDDWEQVNVEW 1001
>pir||S54252 deep orange protein - fruit fly (Drosophila melanogaster)
emb|CAA60382.1| (X86683) deep orange (dor) [Drosophila melanogaster]
Length = 1002
Score = 65.1 bits (157), Expect = 1e-10
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Frame = +1
Query: 7 TRPTATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLE 186
T + ++ L VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 858 TTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVP 917
Query: 187 QAGVGKSSRIRELQMQI----------QKGLVSGTQ-------RETVVAELDALVASSCI 315
+ R+ L+ Q+ Q G +S Q R + E++ ++A+ C+
Sbjct: 918 LLTKEQCRRLGTLKQQLEAEVQTQAQPQSGALSKQQAMELQRKRAALKTEIEDILAADCL 977
Query: 316 LCSDLAIKRIDEPFITHNDNVN-EW 387
C L I ID+PF+ + VN EW
Sbjct: 978 FCG-LLISTIDQPFVDDWEQVNVEW 1001
>sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN
emb|CAA16809.1| (AL021726) EG:171E4.1 [Drosophila melanogaster]
Length = 1002
Score = 63.9 bits (154), Expect = 2e-10
Identities = 40/106 (37%), Positives = 61/106 (56%), Gaps = 18/106 (16%)
Frame = +1
Query: 70 VEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKSSRIRELQMQI---- 237
VE + C C + LL + FF+F C H FHSDCL + V+ + R+ L+ Q+
Sbjct: 879 VESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVPLLTKEQCRRLGTLKQQLEAEV 938
Query: 238 ------QKGLVSGTQ-------RETVVAELDALVASSCILCSDLAIKRIDEPFITHNDNV 378
Q G +S Q R + E++ ++A+ C+ C L I ID+PF+ + V
Sbjct: 939 QTQAQPQSGALSKQQAMELQRKRAALKTEIEDILAADCLFCG-LLISTIDQPFVDDWEQV 997
Query: 379 N-EW 387
N EW
Sbjct: 998 NVEW 1001
>gb|AAC46819.2| (U23522) similar to vacuolar membrane protein PEP3 (SP:PEP3_YEAST,
P27801) [Caenorhabditis elegans]
Length = 1010
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/125 (29%), Positives = 70/125 (55%), Gaps = 19/125 (15%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGV 198
A+ I+ L +R +V+P + C C P+ R F V C+H FH +CL ++
Sbjct: 867 ASEIRDKQEKLKNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECLEIAMISFLSQ 926
Query: 199 GKSSRIREL---------QMQI------QKGLVSGTQRE-TVVAELDALVASSCILCSDL 330
+ +++ L QM+ QKG + ++ + A + +V + C LC ++
Sbjct: 927 EEVEKMKTLIIDEERVLSQMKAEQLAGNQKGFIEKQEKYLKIAAFISNIVGAECPLCGNI 986
Query: 331 AIKRIDEPFITHND---NVNEWIL 393
AI +ID+ F++ + ++N W+L
Sbjct: 987 AISQIDKQFLSDEEFAADLNTWLL 1010
>pir||T34481 hypothetical protein W06B4.3 - Caenorhabditis elegans
Length = 543
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/125 (29%), Positives = 70/125 (55%), Gaps = 19/125 (15%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGV 198
A+ I+ L +R +V+P + C C P+ R F V C+H FH +CL ++
Sbjct: 400 ASEIRDKQEKLKNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECLEIAMISFLSQ 459
Query: 199 GKSSRIREL---------QMQI------QKGLVSGTQRE-TVVAELDALVASSCILCSDL 330
+ +++ L QM+ QKG + ++ + A + +V + C LC ++
Sbjct: 460 EEVEKMKTLIIDEERVLSQMKAEQLAGNQKGFIEKQEKYLKIAAFISNIVGAECPLCGNI 519
Query: 331 AIKRIDEPFITHND---NVNEWIL 393
AI +ID+ F++ + ++N W+L
Sbjct: 520 AISQIDKQFLSDEEFAADLNTWLL 543
>pir||T41607 probable vacuolar membrane protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA21292.1| (AL031855) putative vacuolar membrane protein [Schizosaccharomyces
pombe]
Length = 900
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 19 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGV 198
A I+ + + +RY ++EP E C+ C PL S F +FPCQH+FH C+ K + A
Sbjct: 814 AHEIQTNAENMRNRYIVLEPNESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEKTYKLA-- 871
Query: 199 GKSSRIRELQM 231
+ + ++E Q+
Sbjct: 872 SEKNILKECQL 882
>emb|CAB91628.1| (AJ289080) Vps18 protein [Candida albicans]
Length = 810
Score = 44.7 bits (104), Expect = 1e-04
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 64 AIVEPGEKCYTCGLPLLSRQFFVFP-CQHSFHSDCL 168
AI+EPGE C CG L+ F FP C H+FH +C+
Sbjct: 761 AIIEPGEPCRKCGKLLVQENFVYFPNCHHAFHKECM 796
>gb|AAK40566.1| (AE006659) DNA-directed RNA polymerase, subunit A' (rpoA1)
[Sulfolobus solfataricus]
Length = 880
Score = 35.0 bits (79), Expect = 0.11
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 18/108 (16%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG------------LPLLSRQFFVFPCQHSFH---SDC- 165
++ + +D R ++EPG+KC TCG + L+ V +H + + C
Sbjct: 40 IEGSVMDPRLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCR 99
Query: 166 -LGRKVLEQAGVGKSSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAIK- 339
GR + + + K SRI I+K S +R T + A+ A C C++ K
Sbjct: 100 RCGRVKISEDEIEKYSRIYN---AIKKRWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKI 156
Query: 340 RIDEPF 357
++++P+
Sbjct: 157 KLEKPY 162
>emb|CAB95611.1| (AL359782) hypothetical protein, CHR1.386 [Trypanosoma brucei]
Length = 731
Score = 34.3 bits (77), Expect = 0.18
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 7/53 (13%)
Frame = +1
Query: 10 RPTATNIKVDIA----ALDHRYAIVEPGEKC-YTCGLPL--LSRQFFVFPCQHSFHSDCL 168
RP A I+VD+ HR + E +C ++CGL + L PC H+F +CL
Sbjct: 578 RPVAQEIRVDVKNSLLTAMHRLIVAEEATECIFSCGLCMQPLKSPLTCVPCGHTFCEECL 637
>gb|AAF54693.1| (AE003692) CG6923 gene product [Drosophila melanogaster]
Length = 1256
Score = 33.5 bits (75), Expect = 0.31
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Frame = +1
Query: 4 PTRPT--ATNIKVDIAALDHRYAIV-------EPGEKCYTC-GLPLLSRQFFVFPCQHSF 153
P+RP AT ++ L H+Y V E EKC C L + + PC H F
Sbjct: 1150 PSRPNRGATLETIERNTLPHKYRRVRRPSETDEDAEKCAICLNLFEIENEVRRLPCMHLF 1209
Query: 154 HSDCL 168
H+DC+
Sbjct: 1210 HTDCV 1214
>dbj|BAB08428.1| (AB017067) gb|AAF32311.1~gene_id:MJC20.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 565
Score = 33.1 bits (74), Expect = 0.41
Identities = 20/63 (31%), Positives = 35/63 (54%)
Frame = -1
Query: 204 LSDARLLQYLSPQAIRVERVLTGKNKELSTQ*GQSTSITLLTRLHDCVAMVECSNINLDV 25
L+ RLLQ L P+ + R L+GK + +ST + T +T + V++ C+++ L
Sbjct: 458 LNHERLLQVLKPEPREMGRNLSGKAETMSTNVERKTVKVNITEI---VSVTPCADLTLPP 514
Query: 24 GSG 16
G+G
Sbjct: 515 GAG 517
>ref|NP_055463.1| KIAA0675 gene product [Homo sapiens]
pir||T00362 hypothetical protein KIAA0675 - human
dbj|BAA31650.1| (AB014575) KIAA0675 protein [Homo sapiens]
Length = 1208
Score = 32.7 bits (73), Expect = 0.53
Identities = 18/51 (35%), Positives = 22/51 (42%)
Frame = +1
Query: 73 EPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKSSRIREL 225
E E C C L V PC H FH+ C+ R L Q G + R+ L
Sbjct: 1143 EEEEPCVICHENLSPENLSVLPCAHKFHAQCI-RPWLMQQGTCPTCRLHVL 1192
>dbj|BAB22082.1| (AK002414) putative [Mus musculus]
Length = 379
Score = 32.3 bits (72), Expect = 0.69
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 61 YAIVEPG-EKCYTCGLPLLSRQFF-VFPCQHSFHSDCL 168
+++ EPG E C C ++Q+ V PC+H FH DC+
Sbjct: 317 HSLPEPGTETCAVCLDYFCNKQWLRVLPCKHEFHRDCV 354
>pir||E72520 hypothetical protein APE2138 - Aeropyrum pernix (strain K1)
dbj|BAA81149.1| (AP000063) 122aa long hypothetical protein [Aeropyrum pernix]
Length = 122
Score = 32.3 bits (72), Expect = 0.69
Identities = 19/57 (33%), Positives = 28/57 (48%)
Frame = +1
Query: 148 SFHSDCLGRKVLEQAGVGKSSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCIL 318
S S C+G+KV E AGV K S E + + K L + E +V + A + +L
Sbjct: 40 SMLSACIGKKVAENAGVDKVSVSIEAYVNVDKLLEGKEEIEHIVVRIRAPASEEAVL 96
>emb|CAA11444.1| (AJ223577) intermediate filament protein C1 [Branchiostoma
floridae]
Length = 839
Score = 32.0 bits (71), Expect = 0.91
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 145 HSFHSDCLGRKVLEQAGVGKSSRIRELQMQIQKGLVSGTQRETVVAELDALVA 303
HS S V E+ G SRI LQ +I L +R+T++A+L A +A
Sbjct: 472 HSVQSSVQSSAVFEKQVSGLESRIGSLQGEIDSKLAIIRERDTMIADLRAQIA 524
>ref|NP_111000.1| Uncharacterized conserved protein [Thermoplasma volcanium]
dbj|BAB59622.1| (AP000992) unknown product [Thermoplasma volcanium]
Length = 100
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 85 KCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKSSRIRELQMQIQKGL 249
KCY C P+ + + F F + S H DC + G K +R L + + L
Sbjct: 5 KCYVCEKPVKTGEKFTFTKKGSVHYDCFIADKRNKLGEEKLENLRVLSILLDSNL 59
>sp|Q10322|DMA1_SCHPO DMA1 PROTEIN
pir||T37862 dma1 protein - fission yeast (Schizosaccharomyces pombe)
emb|CAA93693.1| (Z69795) dma1 protein. [Schizosaccharomyces pombe]
emb|CAA57466.1| (X81883) non-essential gene [Schizosaccharomyces pombe]
Length = 267
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Frame = +1
Query: 85 KCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 168
+C C +P+L Q FV PC HS+H C+
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCI 219
>gb|AAF58107.2| (AE003809) CG8242 gene product [Drosophila melanogaster]
Length = 422
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = +1
Query: 85 KCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKS 207
KC+ CG P+ + +V H++HS C +Q G+S
Sbjct: 367 KCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQS 407
>gb|AAH01657.1|AAH01657 (BC001657) Unknown (protein for IMAGE:3356959) [Homo sapiens]
Length = 487
Score = 30.8 bits (68), Expect = 2.0
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 5/56 (8%)
Frame = +1
Query: 1 RPTRPTATNIKVDIAALDHRYAIVEPGEKCYTCG-----LPLLSRQFFVFPCQHSFHSDC 165
R T N+K LDH + P + C+TC PL+ + C FH DC
Sbjct: 160 RKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDY----CPLLFHMDC 215
Query: 166 L 168
L
Sbjct: 216 L 216
>gb|AAK38349.1| (AY030283) PHD zinc finger transcription factor [Homo sapiens]
Length = 704
Score = 30.8 bits (68), Expect = 2.0
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 5/56 (8%)
Frame = +1
Query: 1 RPTRPTATNIKVDIAALDHRYAIVEPGEKCYTCG-----LPLLSRQFFVFPCQHSFHSDC 165
R T N+K LDH + P + C+TC PL+ + C FH DC
Sbjct: 245 RKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDY----CPLLFHMDC 300
Query: 166 L 168
L
Sbjct: 301 L 301
>gb|AAD22654.1|AC007138_18 (AC007138) putative CHP-rich zinc finger protein [Arabidopsis
thaliana]
emb|CAB80685.1| (AL161493) putative CHP-rich zinc finger protein [Arabidopsis
thaliana]
Length = 658
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 1 RPTRPTATNIKVDIAALDHRYAIVEPGEK--CYTCGLPLLSRQFFVFPCQHSFHSDCLG 171
RP + + N+K A DH+ ++ + C CGL + F C H DCLG
Sbjct: 233 RPPQQSLLNLK----AHDHQLTLLPKLDSFTCNACGLKGDRSPYVCFQCGFMIHQDCLG 287
>pir||T00600 hypothetical protein T8K22.6 - Arabidopsis thaliana
gb|AAC18923.1| (AC004136) hypothetical protein [Arabidopsis thaliana]
Length = 627
Score = 30.0 bits (66), Expect = 3.4
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 73 EPGEKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 168
E G++CY+C + + +F C FH +C+
Sbjct: 114 EEGDECYSCSIQTIGTDYYFCATCDKRFHKECV 146
>pir||T00603 hypothetical protein T8K22.9 - Arabidopsis thaliana
gb|AAC18926.1| (AC004136) hypothetical protein [Arabidopsis thaliana]
Length = 627
Score = 30.0 bits (66), Expect = 3.4
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 73 EPGEKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 168
E G++CY+C + + +F C FH +C+
Sbjct: 114 EEGDECYSCSIQTIGTDYYFCATCDKRFHKECV 146
>dbj|BAB27445.1| (AK011171) putative [Mus musculus]
Length = 121
Score = 29.6 bits (65), Expect = 4.5
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 7/77 (9%)
Frame = +1
Query: 76 PGEKCYTCGLPLLSRQFFV-FPCQHSFHSDCLGRKV--LEQAGVGKSSRIRELQMQIQKG 246
P +C C ++ F PC H FH CL R + +EQ + + +E Q + K
Sbjct: 19 PHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQE-LTTQEQEQERQHVVTKQ 77
Query: 247 LVSGTQ----RETVVAELDALVAS 306
G Q RE +V +L +L A+
Sbjct: 78 KAVGVQCPVCREPLVYDLASLKAA 101
>gb|AAB71964.1| (AC002292) Hypothetical protein [Arabidopsis thaliana]
Length = 664
Score = 29.6 bits (65), Expect = 4.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 85 KCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKS 207
KC C L + S F F C+ +FH C+ K ++ G+ KS
Sbjct: 507 KCIACKLDIKSYGHFCFICEVAFHIKCI--KDVDGLGIVKS 545
>dbj|BAB22071.1| (AK002399) putative [Mus musculus]
Length = 456
Score = 29.6 bits (65), Expect = 4.5
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 7/77 (9%)
Frame = +1
Query: 76 PGEKCYTCGLPLLSRQFFV-FPCQHSFHSDCLGRKV--LEQAGVGKSSRIRELQMQIQKG 246
P +C C ++ F PC H FH CL R + +EQ + + +E Q + K
Sbjct: 130 PHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQE-LTTQEQEQERQHVVTKQ 188
Query: 247 LVSGTQ----RETVVAELDALVAS 306
G Q RE +V +L +L A+
Sbjct: 189 KAVGVQCPVCREPLVYDLASLKAA 212
>pir||T03835 vacA protein - slime mold (Dictyostelium discoideum) (fragment)
gb|AAB69389.1| (AF015565) VacA [Dictyostelium discoideum]
Length = 708
Score = 29.6 bits (65), Expect = 4.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 130 VFPCQHSFHSDCLGR 174
V+ C H+FHS+CLG+
Sbjct: 558 VYQCNHTFHSECLGK 572
>gb|AAF81249.1|AF267753_1 (AF267753) putative potassium channel protein Mkt1p
[Mesembryanthemum crystallinum]
Length = 870
Score = 29.6 bits (65), Expect = 4.5
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Frame = -1
Query: 312 TRRRNESVQFC-----HNRLPLRTTDQALLYLHLKF-PDTR*LSDARLLQYLSPQAIR 157
TRR +++Q NRLP+R DQ L +L LK+ D+ L +L L P+AI+
Sbjct: 306 TRRFRDTIQAASSFGLRNRLPVRLQDQMLAHLCLKYRTDSEGLQQQEVLDSL-PKAIK 362
>sp|P15350|RPA1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT A'
emb|CAA40426.1| (X57144) RNA polymerase subunit A [Halobacterium salinarum]
Length = 971
Score = 29.6 bits (65), Expect = 4.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
+D+ +D R +++PG +C TCG
Sbjct: 44 IDMGLMDPRLGVIDPGLECKTCG 66
>pir||A33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain A - Halobacterium
salinarum
Length = 972
Score = 29.6 bits (65), Expect = 4.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
+D+ +D R +++PG +C TCG
Sbjct: 44 IDMGLMDPRLGVIDPGLECKTCG 66
>ref|NP_073618.1| hypothetical protein FLJ21343 [Homo sapiens]
ref|XP_017882.1| hypothetical protein FLJ21343 [Homo sapiens]
dbj|BAB15050.1| (AK024996) unnamed protein product [Homo sapiens]
Length = 332
Score = 29.3 bits (64), Expect = 5.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 88 CYTCGLPLLSRQFF-VFPCQHSFHSDCLGR 174
C C SRQ V PC H FH+ C+ +
Sbjct: 280 CVVCMCDFESRQLLRVLPCNHEFHAKCVDK 309
>ref|NP_066681.1| similar to ardC gene in pSa(IncW plasmid) [Rhizobium rhizogenes]
dbj|BAB16219.1| (AP002086) similar to ardC gene in pSa(IncW plasmid) [Rhizobium
rhizogenes]
Length = 309
Score = 29.3 bits (64), Expect = 5.9
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = +1
Query: 265 RETVVAELDALVASSCILCSDLAIKRIDEPFITHNDNVNEWI 390
RE ++AEL SC LC+DL I EP H + W+
Sbjct: 234 REELIAEL-----GSCFLCADLGIAPELEPRPDHASYLQSWL 270
>dbj|BAB01306.1| (AB025631) gene_id:MPN9.16~unknown protein [Arabidopsis thaliana]
Length = 340
Score = 29.3 bits (64), Expect = 5.9
Identities = 11/29 (37%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Frame = +1
Query: 82 EKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 168
E C C L + + PC+HS+HS+C+
Sbjct: 286 ESCVICRLDYEDDEDLILLPCKHSYHSECI 315
>gb|AAC58817.1| (U84793) envelope glycoprotein [Human immunodeficiency virus type
1]
Length = 403
Score = 29.3 bits (64), Expect = 5.9
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 263 CVPLTRPFCICI*-SSLIRDDFPTPACSSTFRPKQSEWNEC*QGKTKNCRLN 111
CV LT P CI + ++ ++D T + S+T S W E +G+ KNC N
Sbjct: 3 CVKLT-PLCITLNCTNWKKNDTKTSSSSTT---TNSSWGEIKEGEIKNCSFN 50
>dbj|BAB24549.1| (AK006367) putative [Mus musculus]
Length = 631
Score = 29.3 bits (64), Expect = 5.9
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +1
Query: 67 IVEPGEKCYTCGLPLLSRQFF-VFPCQHSFHSDCLGRKVLEQAGVGKSSRIRELQMQIQK 243
++ PG +C C Q+ + PC H FH C+ +L + R I K
Sbjct: 337 LLAPGYQCRLCLKSFSFGQYTRLLPCTHKFHRKCIDNWLLHKCNSCPIDRQVIYNPLIWK 396
Query: 244 GLVSGTQRETVVAELD 291
G+ + Q + + D
Sbjct: 397 GIATDGQAHQLASSKD 412
>gb|AAD20403.1| (AC007019) unknown protein [Arabidopsis thaliana]
Length = 746
Score = 29.3 bits (64), Expect = 5.9
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Frame = +1
Query: 49 LDHRYAI-VEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL 168
+DH AI ++ G KC C L + + C+ +FH +C+
Sbjct: 578 VDHMLAISLKSGSKCTACQLNITKYGYHCTICEINFHIECI 618
>pir||S39006 zygote-specific protein (clone pZS102-2) - Chlamydomonas
reinhardtii
emb|CAA42205.1| (X59683) zys1A [Chlamydomonas reinhardtii]
dbj|BAA77271.1| (AB001485) zys1A [Chlamydomonas reinhardtii]
Length = 183
Score = 29.3 bits (64), Expect = 5.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 139 CQHSFHSDCLGRKVLEQAGVGKSSRIR 219
C S H CLGR L+QAG + R R
Sbjct: 30 CPRSVHLSCLGRWQLQQAGRSEEQRCR 56
>pir||S36918 zygote-specific protein (clone pZS102-69) - Chlamydomonas
reinhardtii
emb|CAA53723.1| (X76117) zys1B [Chlamydomonas reinhardtii]
dbj|BAA77272.1| (AB001486) The zys1A and B genes are linked in inverted orientation
within a 15 kb genomic clone, p213-1.~similar to zys1A
genomic sequence in DDBJ Accession Number AB001485
[Chlamydomonas reinhardtii]
Length = 187
Score = 29.3 bits (64), Expect = 5.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 139 CQHSFHSDCLGRKVLEQAGVGKSSRIR 219
C S H CLGR L+QAG + R R
Sbjct: 30 CPRSVHLSCLGRWQLQQAGRSEEQRCR 56
>pir||T38478 RhoGAP/LIM domain protein - fission yeast (Schizosaccharomyces
pombe)
emb|CAB10138.1| (Z97210) RhoGAP/LIM domain protein [Schizosaccharomyces pombe]
Length = 969
Score = 28.9 bits (63), Expect = 7.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 55 HRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLE 186
H AI +P +CY C + + F C S HS CL R E
Sbjct: 701 HVNAIFKPS-RCYICSESVWGSELRCFHCSISCHSRCLKRLFAE 743
>pir||B33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain A [validated] -
Sulfolobus acidocaldarius
Length = 880
Score = 28.9 bits (63), Expect = 7.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
++ +D + ++EPGEKC CG
Sbjct: 40 IEGGVMDPKLGVIEPGEKCPVCG 62
>sp|P11512|RPA1_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT A'
pir||S04717 DNA-directed RNA polymerase (EC 2.7.7.6) chain A - Sulfolobus
acidocaldarius
emb|CAA32925.1| (X14818) RNA polymerase subunit A (AA 1-880) [Sulfolobus
acidocaldarius]
Length = 880
Score = 28.9 bits (63), Expect = 7.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 34 VDIAALDHRYAIVEPGEKCYTCG 102
++ +D + ++EPGEKC CG
Sbjct: 40 IEGGVMDPKLGVIEPGEKCPVCG 62
>pir||T12177 potassium channel protein - fava bean (fragment)
emb|CAA71598.1| (Y10579) potassium channel [Vicia faba]
Length = 807
Score = 28.9 bits (63), Expect = 7.7
Identities = 17/41 (41%), Positives = 26/41 (62%)
Frame = -1
Query: 282 CHNRLPLRTTDQALLYLHLKFPDTR*LSDARLLQYLSPQAI 160
C NRLP R +Q L Y+ L+F R L+ +L++ L P++I
Sbjct: 319 CRNRLPPRLREQILAYMCLRFKAER-LNQHQLIEQL-PKSI 357
>gb|AAG51882.1|AC016162_3 (AC016162) c-Jun coactivator-like protein (AJH2); 90304-88609
[Arabidopsis thaliana]
Length = 358
Score = 28.9 bits (63), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 50 STIATQSWSLVRSVILVDCPY*VDSSLFFPVSTRST 157
STIA ++W L S++ VD P ++F+ T T
Sbjct: 6 STIARKTWELENSILTVDSPDSTSDNIFYYDDTSQT 41
>gb|AAC36343.1| (AF087412) AJH2 [Arabidopsis thaliana]
Length = 358
Score = 28.9 bits (63), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 50 STIATQSWSLVRSVILVDCPY*VDSSLFFPVSTRST 157
STIA ++W L S++ VD P ++F+ T T
Sbjct: 6 STIARKTWELENSILTVDSPDSTSDNIFYYDDTSQT 41
>emb|CAB90157.1| (AL355013) putative vacuolar biogenesis protein; yeast end1 homolog
[Schizosaccharomyces pombe]
Length = 906
Score = 28.9 bits (63), Expect = 7.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 64 AIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL 168
A V KC TCG+ L F C HS+H C+
Sbjct: 863 AFVVQESKCSTCGIDL-ELPMVHFRCGHSYHQRCV 896
>pir||T45654 zinc-finger-like protein - Arabidopsis thaliana
emb|CAB61964.1| (AL133292) zinc-finger-like protein [Arabidopsis thaliana]
Length = 210
Score = 28.9 bits (63), Expect = 7.7
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 82 EKCYTCGLPLLSRQFFVF--PCQHSFHSDCL 168
++C C + R+ V PC H +HS+C+
Sbjct: 160 DRCVVCQMEFEERESLVVLRPCDHPYHSECI 190
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,272,270
Number of Sequences: 705144
Number of extensions: 3315238
Number of successful extensions: 10402
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 10025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10387
length of database: 222,175,239
effective HSP length: 114
effective length of database: 141,788,823
effective search space used: 3402931752
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)