The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1605_H09_O17ZS5.seq 1605_H09_O17ZS5 0 0 0 1 452
(452 letters)
Database: nr
705,144 sequences; 222,175,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||I54551 histocompatibility antigen - crab-eating macaqu... 32 1.3
dbj|BAA88486.1| (AB025333) RNA polymerase III largest subun... 32 1.6
ref|NP_014759.1| RNA polymerase III large subunit; Rpo31p [... 32 2.1
emb|CAB53757.1| (AL049730) putative protein [Arabidopsis th... 30 4.8
pir||T19781 hypothetical protein C36B1.10 - Caenorhabditis ... 30 4.8
ref|NP_044051.1| MC100R [Molluscum contagiosum virus subtyp... 30 6.2
pir||S48317 hypothetical protein YFL013w-a - yeast (Sacchar... 30 8.1
gb|AAA98795.1|AAA98795 (L49344) leucine zipper protein 1 [M... 30 8.1
>pir||I54551 histocompatibility antigen - crab-eating macaque (fragment)
gb|AAA70050.1| (U02976) histocompatibility antigen [Macaca fascicularis]
Length = 354
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/54 (35%), Positives = 27/54 (49%)
Frame = +1
Query: 133 HSSHSGLPAGFQPRLLPHAPRSRQRPQLRGVPQGLLA*GAYMP*RLELQEIWRR 294
H H GLP +PR L P SR + G+ GL+ GA + + + +WRR
Sbjct: 273 HVQHEGLP---EPRALRWEPSSRSTIPIVGIIAGLVLLGAVVTGAVVVAVMWRR 323
>dbj|BAA88486.1| (AB025333) RNA polymerase III largest subunit [Eptatretus burgeri]
Length = 537
Score = 32.0 bits (71), Expect = 1.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 139 SHSGLPAGFQPRLLPHAPRSRQRPQLRG 222
S S +P GF+ R LPH PRS + P +G
Sbjct: 299 SGSRIPDGFEDRSLPHFPRSSKLPAAKG 326
>ref|NP_014759.1| RNA polymerase III large subunit; Rpo31p [Saccharomyces cerevisiae]
sp|P04051|RPC1_YEAST DNA-DIRECTED RNA POLYMERASE III LARGEST SUBUNIT (C160)
pir||RNBY3L DNA-directed RNA polymerase (EC 2.7.7.6) III 160K chain - yeast
(Saccharomyces cerevisiae)
emb|CAA26905.1| (X03129) RNA polymerase III largest subunit [Saccharomyces
cerevisiae]
emb|CAA62123.1| (X90518) ORF O3254 [Saccharomyces cerevisiae]
emb|CAA64036.1| (X94335) YOR3254c [Saccharomyces cerevisiae]
emb|CAA99314.1| (Z75024) ORF YOR116c [Saccharomyces cerevisiae]
Length = 1460
Score = 31.6 bits (70), Expect = 2.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 139 SHSGLPAGFQPRLLPHAPRSRQRPQLRG 222
S + +P GFQ R LPH P++ + PQ +G
Sbjct: 819 SGNRVPDGFQDRSLPHFPKNSKTPQSKG 846
>emb|CAB53757.1| (AL049730) putative protein [Arabidopsis thaliana]
emb|CAB78307.1| (AL161534) putative protein [Arabidopsis thaliana]
Length = 695
Score = 30.4 bits (67), Expect = 4.8
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 127 RDHSSHSGLPAGFQPRLLPHAPRS--RQRPQLRGVP 228
R H + + +PAGFQP L H S RQ+ Q++ P
Sbjct: 583 RYHDTETPVPAGFQPEQLTHLASSLPRQQQQVQNTP 618
>pir||T19781 hypothetical protein C36B1.10 - Caenorhabditis elegans
emb|CAB02275.1| (Z80215) contains similarity to Pfam domain: PF00069 (Eukaryotic
protein kinase domain), Score=128.5, E-value=4.1e-35,
N=2~cDNA EST EMBL:AW057130 comes from this gene~cDNA EST
EMBL:AW057330 comes from this gene~cDNA EST
EMBL:AW057408 comes from this ge>
Length = 381
Score = 30.4 bits (67), Expect = 4.8
Identities = 14/48 (29%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Frame = +2
Query: 119 NGEEITLHIQVSQPASNHASSPMHRGVVNV---HNYEVCLKVCWPEEPTCP 262
+G ++ L +Q ++ A S ++RG+ H E+ +K WP CP
Sbjct: 18 DGRDMNLSLQNMNLFASGAFSNVYRGIARTESNHQMEIVIKKTWPRHKGCP 68
>ref|NP_044051.1| MC100R [Molluscum contagiosum virus subtype 1]
sp|Q98267|NTP1_MCV1 NUCLEOSIDE TRIPHOSPHATASE I (NUCLEOSIDE TRIPHOSPHATE
PHOSPHOHYDROLASE I) (NPH I) (MC100R)
pir||T30702 hypothetical protein 100R - Molluscum contagiosum virus 1
gb|AAC55228.1| (U60315) MC100R [Molluscum contagiosum virus subtype 1]
Length = 634
Score = 30.0 bits (66), Expect = 6.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 77 IAAMPWSSPNAKQSNGEEITLHIQVSQPASNHASSPMHRGVVNVH 211
I M W+ + KQ G I LH +HA++P R VNVH
Sbjct: 459 ILDMTWNEASLKQIIGRAIRLH--------SHANNPPERRYVNVH 495
>pir||S48317 hypothetical protein YFL013w-a - yeast (Saccharomyces cerevisiae)
emb|CAA86348.1| (Z46255) orf, len: 267, CAI: 0.14, 93% overlapped [Saccharomyces
cerevisiae]
Length = 267
Score = 29.6 bits (65), Expect = 8.1
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = +2
Query: 44 FIASTLLLANGIAAMPWSSPNAKQSNG 124
F+ S++LL N + M W +PN+ S+G
Sbjct: 238 FLPSSILLMNSLLLMRWLAPNSNSSSG 264
>gb|AAA98795.1|AAA98795 (L49344) leucine zipper protein 1 [Mus musculus]
Length = 1067
Score = 29.6 bits (65), Expect = 8.1
Identities = 22/72 (30%), Positives = 42/72 (57%), Gaps = 6/72 (8%)
Frame = +2
Query: 20 SKSIKMKFFIASTLLLAN--GIAAMPWSSPNAKQSNGEEITLHIQVSQPA----SNHASS 181
SKS+ K + T+ ++ G A+P +P + ++ T +IQV P SNH SS
Sbjct: 786 SKSVTSKVTSSITIYPSDSSGPRAVPSEAPRERHTS----TSNIQVGPPELTAISNHVSS 841
Query: 182 PMHRGVVNVHNYEVCLKV 235
P+ +++H +++ L++
Sbjct: 842 PLE---LSIHKHDITLQL 856
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,764,785
Number of Sequences: 705144
Number of extensions: 3483467
Number of successful extensions: 8861
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8858
length of database: 222,175,239
effective HSP length: 108
effective length of database: 146,019,687
effective search space used: 6132826854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)