Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB21209.1| (AP002913) putative ribosomal protein L26 [... 119 8e-32
dbj|BAB08459.1| (AB013390) 60S ribosomal protein L26 [Arabi... 112 4e-31
sp|P78946|RL26_SCHPO 60S RIBOSOMAL PROTEIN L26 >gi|1236272|... 111 5e-31
gb|AAC64166.1| (AF093540) ribosomal protein L26 [Zea mays] 113 5e-30
ref|NP_057177.1| ribosomal protein L26 homolog [Homo sapien... 107 1e-29
ref|NP_000978.1| ribosomal protein L26 [Homo sapiens] >gi|6... 107 2e-29
gb|AAA60279.1| (L07287) ribosomal protein L26 [Homo sapiens] 107 2e-29
ref|XP_011224.2| ribosomal protein L26 homolog [Homo sapiens] 107 8e-29
sp|Q19869|RL26_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L26 >gi... 103 8e-29
sp|P12749|RL26_RAT 60S RIBOSOMAL PROTEIN L26 >gi|71312|pir|... 104 1e-28
sp|P47832|RL26_CHICK 60S RIBOSOMAL PROTEIN L26 >gi|505327|g... 107 5e-28
gb|AAF49215.1| (AE003519) CG6846 gene product [Drosophila m... 98 2e-26
pir||T46057 60S RIBOSOMAL PROTEIN-like - Arabidopsis thalia... 115 2e-25
pir||T18476 hypothetical protein C0535w - malaria parasite ... 102 5e-25
sp|Q39411|RL26_BRARA 60S RIBOSOMAL PROTEIN L26 >gi|2160300|... 109 1e-23
ref|NP_011548.1| Ribosomal protein L26B (L33B) (YL33); Rpl2... 109 1e-23
sp|P53221|R262_YEAST 60S RIBOSOMAL PROTEIN L26-B (YL33) 109 1e-23
ref|NP_013448.1| Ribosomal protein L26A (L33A) (YL33); Rpl2... 109 1e-23
pir||T21490 hypothetical protein F28C6.7b - Caenorhabditis ... 79 1e-21
ref|XP_018119.1| similar to ribosomal protein L26 (H. sapie... 96 9e-20
ref|XP_017690.1| similar to ribosomal protein L26 (H. sapie... 96 2e-19
sp|P51414|RL26_ARATH 60S RIBOSOMAL PROTEIN L26 84 9e-19
ref|XP_012663.2| ribosomal protein L26 [Homo sapiens] 84 5e-16
pir||C71186 probable ribosomal protein L24 - Pyrococcus hor... 67 7e-14
sp|O59429|RL24_PYRHO 50S RIBOSOMAL PROTEIN L24P 67 7e-14
sp|O26122|RL24_METTH 50S RIBOSOMAL PROTEIN L24P >gi|7441028... 62 6e-13
sp|Q9YF83|RL24_AERPE 50S RIBOSOMAL PROTEIN L24P >gi|7441031... 68 4e-11
ref|NP_126021.1| LSU ribosomal protein L24P [Pyrococcus aby... 67 5e-11
sp|P14034|RL24_METVA 50S RIBOSOMAL PROTEIN L24P >gi|71313|p... 61 4e-09
sp|P54038|RL24_METJA 50S RIBOSOMAL PROTEIN L24P >gi|2119143... 61 4e-09
sp|Q9UX95|RL24_SULSO 50S RIBOSOMAL PROTEIN L24P >gi|6015770... 57 6e-08
ref|NP_070739.1| LSU ribosomal protein L24P (rpl24P) [Archa... 56 1e-07
pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosoma... 53 1e-06
sp|P10972|RL24_HALMA 50S RIBOSOMAL PROTEIN L24P (HMAL24) (H... 53 1e-06
prf||1501256A ribosomal protein L16 [Haloarcula marismortui] 53 1e-06
sp|O05633|RL24_SULAC 50S RIBOSOMAL PROTEIN L24P >gi|2052257... 51 3e-06
ref|NP_110855.1| 50S ribosomal protein L24 [Thermoplasma vo... 48 4e-05
sp|P41960|RL26_BRUPA 60S RIBOSOMAL PROTEIN L26 34 3e-04
emb|CAA57759.1| (X82316) ribosomal protein L26 [Brugia paha... 34 3e-04
ref|XP_017309.1| similar to ribosomal protein L26 (H. sapie... 40 0.010
gb|AAF07848.1|AF201839_1 (AF201839) dynamin IIIbb isoform [... 37 0.066
sp|Q9ZI41|RL24_AQUPY 50S RIBOSOMAL PROTEIN L24 >gi|4165875|... 37 0.086
ref|NP_113271.1| 60S ribosomal protein L26 [Guillardia thet... 37 0.086
dbj|BAA74843.1| (AB020627) KIAA0820 protein [Homo sapiens] 36 0.11
emb|CAB10072.1| (Z97195) match: multiple proteins; match: Q... 36 0.11
emb|CAB66647.1| (AL136712) hypothetical protein [Homo sapiens] 36 0.15
sp|P02425|RL24_ECOLI 50S RIBOSOMAL PROTEIN L24 >gi|7428692|... 35 0.19
sp|Q9Z7R8|RL24_CHLPN 50S RIBOSOMAL PROTEIN L24 >gi|7441019|... 35 0.25
sp|O67569|RL24_AQUAE 50S RIBOSOMAL PROTEIN L24 >gi|7428694|... 35 0.25
pir||C82058 ribosomal protein L24 VC2585 [imported] - Vibri... 35 0.25
sp|P49629|RL26_XENLA 60S RIBOSOMAL PROTEIN L26 >gi|104082|p... 29 0.25
sp|P46177|RL24_BUCAK 50S RIBOSOMAL PROTEIN L24 >gi|632221|p... 34 0.43
sp|P10141|RL24_MYCCA 50S RIBOSOMAL PROTEIN L24 >gi|71306|pi... 34 0.43
sp|P33103|RL24_MICLU 50S RIBOSOMAL PROTEIN L24 >gi|322073|p... 34 0.43
emb|CAB82081.1| (AL161803) 50S ribosomal protein L24 [Strep... 34 0.56
sp|O32994|RL24_MYCLE 50S RIBOSOMAL PROTEIN L24 >gi|11276857... 34 0.56
sp|Q08877|DYN3_RAT DYNAMIN 3 (DYNAMIN, TESTICULAR) (T-DYNAM... 33 0.73
sp|Q9XD25|RL24_LEPIN 50S RIBOSOMAL PROTEIN L24 >gi|5163215|... 33 0.96
gb|AAF80592.1|AF223948_1 (AF223948) biotin carboxyl carrier... 33 1.2
pir||T51531 biotin carboxyl carrier protein homolog T20K14.... 33 1.2
sp|P38513|RL24_THEMA 50S RIBOSOMAL PROTEIN L24 >gi|481939|p... 33 1.2
pir||S43192 ribosomal protein L24 - Thermus aquaticus >gi|4... 33 1.2
pir||B83115 50S ribosomal protein L24 PA4252 [imported] - P... 33 1.2
emb|CAB55736.1| (AL117387) putative ABC transport protein [... 32 1.6
sp|P08488|GLT3_WHEAT GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNI... 32 2.1
sp|P44362|RL24_HAEIN 50S RIBOSOMAL PROTEIN L24 >gi|1075244|... 32 2.1
pir||D81267 50S ribosomal protein L24 Cj1696c [imported] - ... 32 2.1
sp|Q9CL41|RL24_PASMU 50S RIBOSOMAL PROTEIN L24 >gi|12721779... 32 2.1
emb|CAC38033.1| (AJ306974) glutenin HMW subunit 1Dy [Aegilo... 32 2.8
ref|XP_010585.2| Ser/Arg-related nuclear matrix protein (pl... 32 2.8
ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (pl... 32 2.8
dbj|BAB43331.1| (AP003136) 50S ribosomal protein L24 [Staph... 32 2.8
sp|Q9ZCR6|RL24_RICPR 50S RIBOSOMAL PROTEIN L24 >gi|7441018|... 32 2.8
gb|AAG19319.1| (AE005027) phosphoribosylformylglycinamidine... 31 3.6
emb|CAC13749.1| (AL445565) 50S RIBOSOMAL PROTEIN L24 [Mycop... 31 3.6
gb|AAD22679.1|AC007063_5 (AC007063) malate oxidoreductase (... 31 4.7
sp|O13394|CHS5_USTMA CHITIN SYNTHASE 5 (CHITIN-UDP ACETYL-G... 31 4.7
sp|P95063|RL24_MYCTU 50S RIBOSOMAL PROTEIN L24 >gi|7441015|... 31 4.7
gb|AAD25540.1|AF133730_1 (AF133730) Slit1 [Rattus norvegicus] 30 6.2
gb|AAF35990.1|AC005836_2 (AC005836) L509.2 [Leishmania major] 30 6.2
ref|NP_075242.1| Slit1 [Rattus norvegicus] >gi|7514086|pir|... 30 6.2
gb|AAD44758.1|AF144627_1 (AF144627) SLIT1 [Mus musculus] 30 6.2
emb|CAA51374.1| (X72850) acetyl CoA acetyltransferase [Sphi... 30 6.2
gb|AAF35400.1|AC004145_6 (AC004145) L5801.7R [Leishmania ma... 30 6.2
pir||T01456 extensin homolog F24O1.18 - Arabidopsis thalian... 30 6.2
sp|P24318|RL24_THETH 50S RIBOSOMAL PROTEIN L24 >gi|94725|pi... 30 6.2
ref|NP_102131.1| 50S ribosomal protein L24 [Mesorhizobium l... 30 6.2
gb|AAC15244.1| (U39229) high molecular weight glutenin subu... 30 8.1
sp|P10387|GLT0_WHEAT GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNI... 30 8.1
pir||F75481 hypothetical protein - Deinococcus radiodurans ... 30 8.1
>dbj|BAB21209.1| (AP002913) putative ribosomal protein L26 [Oryza sativa]
Length = 157
Score = 119 bits (297), Expect(2) = 8e-32
Identities = 57/83 (68%), Positives = 68/83 (81%)
Frame = +1
Query: 241 NVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSN 420
NVRSIPIRKDDEV +VRGS KGREGK+ VYR ++V+HVER+TR+K NG +V +GIHPS
Sbjct: 43 NVRSIPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSK 102
Query: 421 CVITKLKLDKDREDILRRYKVGR 489
V+TKLKLDKDR+ IL R GR
Sbjct: 103 VVVTKLKLDKDRKAILDRKARGR 125
Score = 38.5 bits (88), Expect(2) = 8e-32
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF APS RRV+MSA LS ELR +
Sbjct: 2 KRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHK 41
>dbj|BAB08459.1| (AB013390) 60S ribosomal protein L26 [Arabidopsis thaliana]
Length = 146
Score = 112 bits (280), Expect(2) = 4e-31
Identities = 52/93 (55%), Positives = 72/93 (76%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQ 390
P + ++ NVRS+PIRKDDEV +VRG+ KGREGK+ VYR K+V+H+ER+TR+K NG
Sbjct: 33 PLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGS 92
Query: 391 SVPLGIHPSNCVITKLKLDKDREDILRRYKVGR 489
+V +G++ SN +ITKL+LDKDR+ +L R GR
Sbjct: 93 TVNVGVNASNVMITKLRLDKDRKSLLERKANGR 125
Score = 42.7 bits (99), Expect(2) = 4e-31
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF APS RRV+MS+PLSK+LR +
Sbjct: 2 KFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNK 41
>sp|P78946|RL26_SCHPO 60S RIBOSOMAL PROTEIN L26
dbj|BAA12196.1| (D83993) putative ribosomal protein L26, most similer to pir:
S51347 (68.6% identity in 121 aa overlap)
[Schizosaccharomyces pombe]
emb|CAC05512.1| (AL391603) 60s ribosomal protein l26 [Schizosaccharomyces pombe]
Length = 126
Score = 111 bits (278), Expect(2) = 5e-31
Identities = 50/77 (64%), Positives = 67/77 (86%)
Frame = +1
Query: 244 VRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNC 423
+RS+P+R+DD++T++RGSNKGREGKITSVYR K+++ +ERVTR+KANG S P+GI S
Sbjct: 44 IRSLPVRRDDQITVIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKV 103
Query: 424 VITKLKLDKDREDILRR 474
VITKL LDKDR+D++ R
Sbjct: 104 VITKLHLDKDRKDLIVR 120
Score = 43.1 bits (100), Expect(2) = 5e-31
Identities = 22/40 (55%), Positives = 24/40 (60%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K + V HF APS RRV+MSAPLSKELREQ
Sbjct: 2 KFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQ 41
>gb|AAC64166.1| (AF093540) ribosomal protein L26 [Zea mays]
Length = 121
Score = 113 bits (283), Expect(2) = 5e-30
Identities = 51/76 (67%), Positives = 65/76 (85%)
Frame = +1
Query: 241 NVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSN 420
NVRSIPIRKDDEV +VRG+ KGREGK+ VYR ++V+HVER+TR+K NG +V +GIHPS
Sbjct: 43 NVRSIPIRKDDEVQVVRGTYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSK 102
Query: 421 CVITKLKLDKDREDIL 468
++TKLKLDKDR+ +L
Sbjct: 103 VIVTKLKLDKDRKALL 118
Score = 37.7 bits (86), Expect(2) = 5e-30
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF APS RRV+MSA LS ELR +
Sbjct: 2 KRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAGLSTELRHK 41
>ref|NP_057177.1| ribosomal protein L26 homolog [Homo sapiens]
ref|XP_016869.1| similar to ribosomal protein L26 homolog (H. sapiens) [Homo
sapiens]
gb|AAD39846.1| (AF083248) ribosomal protein L26 homolog [Homo sapiens]
Length = 145
Score = 107 bits (268), Expect(2) = 1e-29
Identities = 54/94 (57%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANG 387
P + + NVRS+PIRKDDEV +VRG KG++ GK+ VYR KYV+++ERV R+KANG
Sbjct: 33 PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANG 92
Query: 388 QSVPLGIHPSNCVITKLKLDKDREDILRRYKVGRE 492
+V +GIHPS VIT+LKLDKDR+ IL R R+
Sbjct: 93 TTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ 127
Score = 42.4 bits (98), Expect(2) = 1e-29
Identities = 21/40 (52%), Positives = 24/40 (59%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF APS RR IMS+PLSKELR++
Sbjct: 2 KFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQK 41
>ref|NP_000978.1| ribosomal protein L26 [Homo sapiens]
ref|NP_033106.1| ribosomal protein L26 [Mus musculus]
sp|Q02877|RL26_HUMAN 60S RIBOSOMAL PROTEIN L26
pir||S33713 ribosomal protein L26, cytosolic - human
pir||S48864 ribosomal protein L26 - mouse
emb|CAA49189.1| (X69392) ribosomal protein L26 [Homo sapiens]
emb|CAA56716.1| (X80699) L26 [Mus musculus]
Length = 145
Score = 107 bits (268), Expect(2) = 2e-29
Identities = 54/94 (57%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANG 387
P + + NVRS+PIRKDDEV +VRG KG++ GK+ VYR KYV+++ERV R+KANG
Sbjct: 33 PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANG 92
Query: 388 QSVPLGIHPSNCVITKLKLDKDREDILRRYKVGRE 492
+V +GIHPS VIT+LKLDKDR+ IL R R+
Sbjct: 93 TTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ 127
Score = 42.0 bits (97), Expect(2) = 2e-29
Identities = 21/40 (52%), Positives = 24/40 (59%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF APS RR IMS+PLSKELR++
Sbjct: 2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQK 41
>gb|AAA60279.1| (L07287) ribosomal protein L26 [Homo sapiens]
Length = 145
Score = 107 bits (268), Expect(2) = 2e-29
Identities = 54/94 (57%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANG 387
P + + NVRS+PIRKDDEV +VRG KG++ GK+ VYR KYV+++ERV R+KANG
Sbjct: 33 PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANG 92
Query: 388 QSVPLGIHPSNCVITKLKLDKDREDILRRYKVGRE 492
+V +GIHPS VIT+LKLDKDR+ IL R R+
Sbjct: 93 TTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ 127
Score = 42.0 bits (97), Expect(2) = 2e-29
Identities = 21/40 (52%), Positives = 24/40 (59%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF APS RR IMS+PLSKELR++
Sbjct: 2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQK 41
>ref|XP_011224.2| ribosomal protein L26 homolog [Homo sapiens]
Length = 145
Score = 107 bits (267), Expect(2) = 8e-29
Identities = 56/94 (59%), Positives = 73/94 (77%), Gaps = 5/94 (5%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANG 387
P + + NVRS+PIRKDDEV +VRG KG++ GK+ VYR KYV+++ERV R+KANG
Sbjct: 33 PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVIQVYRKKYVIYIERVQREKANG 92
Query: 388 QSVPLGIHPSNCVITKLKLDKDREDILRR----YKVGRE 492
+V +GIHPS VIT+LKLDKDR+ IL R +VG+E
Sbjct: 93 TTVHVGIHPSKVVITRLKLDKDRKKILERKAKSQQVGKE 131
Score = 40.0 bits (92), Expect(2) = 8e-29
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V +F APS RR IMS+PLSKELR++
Sbjct: 2 KFNPFVTSDRSKNRKRYFNAPSHVRRKIMSSPLSKELRQK 41
>sp|Q19869|RL26_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L26
pir||T21486 hypothetical protein F28C6.7a - Caenorhabditis elegans
emb|CAA92674.1| (Z68315) Similarity to Human ribosomal protein L26 (SW:RL26_HUMAN),
contains similarity to Pfam domain: PF00467 (KOW motif),
Score=86.2, E-value=2.1e-22, N=1~cDNA EST yk67h12.3
comes from this gene; cDNA EST yk75h4.3 comes from this
gene~cDNA EST yk91h>
Length = 142
Score = 103 bits (256), Expect(2) = 8e-29
Identities = 45/93 (48%), Positives = 66/93 (70%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQ 390
P + ++ +R+IPIR DDEV ++RG +KG G++ YR K+V+H++++TR+KANG
Sbjct: 33 PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGNTGRVLRCYRKKFVIHIDKITREKANGS 92
Query: 391 SVPLGIHPSNCVITKLKLDKDREDILRRYKVGR 489
+V +GIHPS ITKLKLDKDR ++ R GR
Sbjct: 93 TVHIGIHPSKVAITKLKLDKDRRALVERKAAGR 125
Score = 44.3 bits (103), Expect(2) = 8e-29
Identities = 21/38 (55%), Positives = 24/38 (62%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELR 230
K+NP V HF APS +RR IMSAPL+KELR
Sbjct: 2 KVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELR 39
>sp|P12749|RL26_RAT 60S RIBOSOMAL PROTEIN L26
pir||R5RT26 ribosomal protein L26, cytosolic [validated] - rat
emb|CAA32801.1| (X14671) rpl 26 (AA 1-145) [Rattus rattus]
prf||1511091A ribosomal protein L26 [Rattus norvegicus]
Length = 145
Score = 104 bits (260), Expect(2) = 1e-28
Identities = 53/94 (56%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANG 387
P + + NVRS+PIRKDDEV +VRG KG++ GK+ VYR KYV+++ERV R+KANG
Sbjct: 33 PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANG 92
Query: 388 QSVPLGIHPSNCVITKLKLDKDREDILRRYKVGRE 492
+V +GI PS VIT+LKLDKDR+ IL R R+
Sbjct: 93 TTVHVGIRPSKVVITRLKLDKDRKKILERKAKSRQ 127
Score = 42.0 bits (97), Expect(2) = 1e-28
Identities = 21/40 (52%), Positives = 24/40 (59%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF APS RR IMS+PLSKELR++
Sbjct: 2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQK 41
>sp|P47832|RL26_CHICK 60S RIBOSOMAL PROTEIN L26
gb|AAA48934.1| (L34018) ribosomal protein L26 [Gallus gallus]
Length = 128
Score = 107 bits (268), Expect(2) = 5e-28
Identities = 54/94 (57%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANG 387
P + + NVRS+PIRKDDEV +VRG KG++ GK+ VYR KYV+++ERV R+KANG
Sbjct: 16 PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANG 75
Query: 388 QSVPLGIHPSNCVITKLKLDKDREDILRRYKVGRE 492
+V +GIHPS VIT+LKLDKDR+ IL R R+
Sbjct: 76 TTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ 110
Score = 37.0 bits (84), Expect(2) = 5e-28
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = +3
Query: 165 HFKAPSDQRRVIMSAPLSKELREQ 236
HF APS RR IMS+PLSKELR++
Sbjct: 1 HFNAPSHIRRKIMSSPLSKELRQK 24
>gb|AAF49215.1| (AE003519) CG6846 gene product [Drosophila melanogaster]
Length = 149
Score = 98.2 bits (243), Expect(2) = 2e-26
Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANG 387
P + + NVRS+PIR+DDEV ++RG KG + GK+ YR K+VV+VE++ R+ ANG
Sbjct: 33 PLSKELRQKYNVRSMPIRRDDEVQVIRGHFKGNQVGKVVQAYRKKFVVYVEKIQRENANG 92
Query: 388 QSVPLGIHPSNCVITKLKLDKDREDILRRYKVGR 489
+V +GIHPS +I KLKLDKDR+ IL R GR
Sbjct: 93 TNVYVGIHPSKVLIVKLKLDKDRKAILERRGKGR 126
Score = 41.2 bits (95), Expect(2) = 2e-26
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF+APS RR +MSAPLSKELR++
Sbjct: 2 KQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQK 41
>pir||T46057 60S RIBOSOMAL PROTEIN-like - Arabidopsis thaliana
emb|CAB66929.1| (AL132965) 60S RIBOSOMAL PROTEIN-like [Arabidopsis thaliana]
gb|AAK43973.1|AF370158_1 (AF370158) putative 60S ribosomal protein [Arabidopsis thaliana]
Length = 146
Score = 115 bits (287), Expect = 2e-25
Identities = 58/94 (61%), Positives = 73/94 (76%), Gaps = 2/94 (2%)
Frame = +1
Query: 208 LPSPRSSVSRA--NVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKA 381
+ SP S+ R NVRS+PIRKDDEV IVRG+ KGREGK+ VYR K+V+H+ER+TR+K
Sbjct: 30 MSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKV 89
Query: 382 NGQSVPLGIHPSNCVITKLKLDKDREDILRRYKVGR 489
NG +V +GI PS VITKL+LDKDR+ +L R GR
Sbjct: 90 NGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR 125
Score = 40.0 bits (92), Expect = 0.008
Identities = 19/40 (47%), Positives = 24/40 (59%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF A S +RRVIMS+PLS +LR++
Sbjct: 2 KYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQK 41
>pir||T18476 hypothetical protein C0535w - malaria parasite (Plasmodium
falciparum)
emb|CAA15619.1| (AL008970) putative 60S Ribosomal protein L26 [Plasmodium
falciparum]
Length = 126
Score = 102 bits (254), Expect(2) = 5e-25
Identities = 47/76 (61%), Positives = 61/76 (79%)
Frame = +1
Query: 247 RSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
RS+P+RKDDEV I RG N GREGK+ + R +Y ++VERVTR+K NG+S +GIHPSN V
Sbjct: 45 RSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVV 104
Query: 427 ITKLKLDKDREDILRR 474
+TKLK+DK+R+ IL R
Sbjct: 105 LTKLKVDKNRKKILDR 120
Score = 32.3 bits (72), Expect(2) = 5e-25
Identities = 17/38 (44%), Positives = 19/38 (49%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELR 230
K N HF AP+ RR IMS+ LSKELR
Sbjct: 2 KFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELR 39
>sp|Q39411|RL26_BRARA 60S RIBOSOMAL PROTEIN L26
dbj|BAA18941.1| (D78495) ribosomal protein [Brassica rapa]
Length = 146
Score = 109 bits (272), Expect = 1e-23
Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Frame = +1
Query: 208 LPSPRSSVSRA--NVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKA 381
+ SP S+ R NVRS+PIRKDDE IVRG+ KGREGK+ VYR K V+H+ER+TR+K
Sbjct: 30 MSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKV 89
Query: 382 NGQSVPLGIHPSNCVITKLKLDKDREDILRRYKVGR 489
NG +V +G+ P+ VITKL+LDKDR+ +L R GR
Sbjct: 90 NGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGR 125
Score = 37.4 bits (85), Expect = 0.051
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF A S +RRV MS+PLS +LR++
Sbjct: 2 KYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQK 41
>ref|NP_011548.1| Ribosomal protein L26B (L33B) (YL33); Rpl26bp [Saccharomyces
cerevisiae]
pir||S64325 ribosomal protein L26.e.B, cytosolic - yeast (Saccharomyces
cerevisiae)
emb|CAA97022.1| (Z72819) ORF YGR034w [Saccharomyces cerevisiae]
Length = 129
Score = 109 bits (272), Expect = 1e-23
Identities = 52/89 (58%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Frame = +1
Query: 208 LPSPRSSVSRAN--VRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKA 381
L +P S RA ++++PIR+DDEV +VRGS KG+EGKI+SVYRLK+ V V++VT++K
Sbjct: 33 LSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKV 92
Query: 382 NGQSVPLGIHPSNCVITKLKLDKDREDILRR 474
NG SVP+ +HPS VITKL LDKDR+ +++R
Sbjct: 93 NGASVPINLHPSKLVITKLHLDKDRKALIQR 123
Score = 38.5 bits (88), Expect = 0.023
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = +3
Query: 165 HFKAPSDQRRVIMSAPLSKELREQ 236
+F APS +RRV++SAPLSKELR Q
Sbjct: 21 YFTAPSSERRVLLSAPLSKELRAQ 44
>sp|P53221|R262_YEAST 60S RIBOSOMAL PROTEIN L26-B (YL33)
Length = 127
Score = 109 bits (272), Expect = 1e-23
Identities = 52/89 (58%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Frame = +1
Query: 208 LPSPRSSVSRAN--VRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKA 381
L +P S RA ++++PIR+DDEV +VRGS KG+EGKI+SVYRLK+ V V++VT++K
Sbjct: 31 LSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKV 90
Query: 382 NGQSVPLGIHPSNCVITKLKLDKDREDILRR 474
NG SVP+ +HPS VITKL LDKDR+ +++R
Sbjct: 91 NGASVPINLHPSKLVITKLHLDKDRKALIQR 121
Score = 39.7 bits (91), Expect = 0.010
Identities = 20/42 (47%), Positives = 25/42 (58%)
Frame = +3
Query: 111 MTKINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
M K + V +F APS +RRV++SAPLSKELR Q
Sbjct: 1 MAKQSLDVSSDRRKARKAYFTAPSSERRVLLSAPLSKELRAQ 42
>ref|NP_013448.1| Ribosomal protein L26A (L33A) (YL33); Rpl26ap [Saccharomyces
cerevisiae]
sp|P05743|R261_YEAST 60S RIBOSOMAL PROTEIN L26-A (YL33)
pir||S51347 ribosomal protein L26.e.A, cytosolic - yeast (Saccharomyces
cerevisiae)
gb|AAB67254.1| (U19028) Ylr344wp [Saccharomyces cerevisiae]
Length = 127
Score = 109 bits (272), Expect = 1e-23
Identities = 52/89 (58%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
Frame = +1
Query: 208 LPSPRSSVSRAN--VRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKA 381
L +P S RA ++++PIR+DDEV +VRGS KG+EGKI+SVYRLK+ V V++VT++K
Sbjct: 31 LSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKV 90
Query: 382 NGQSVPLGIHPSNCVITKLKLDKDREDILRR 474
NG SVP+ +HPS VITKL LDKDR+ +++R
Sbjct: 91 NGASVPINLHPSKLVITKLHLDKDRKALIQR 121
Score = 40.8 bits (94), Expect = 0.005
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = +3
Query: 111 MTKINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
M K + V +F APS QRRV++SAPLSKELR Q
Sbjct: 1 MAKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQ 42
>pir||T21490 hypothetical protein F28C6.7b - Caenorhabditis elegans
emb|CAA92678.1| (Z68315) contains similarity to Pfam domain: PF00467 (KOW motif),
Score=79.6, E-value=2.1e-20, N=1~cDNA EST yk82g12.3
comes from this gene~cDNA EST yk82g12.5 comes from this
gene~cDNA EST yk559a1.3 comes from this gene
[Caenorhabditis elegans]
Length = 106
Score = 79.3 bits (194), Expect(2) = 1e-21
Identities = 32/69 (46%), Positives = 51/69 (73%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQ 390
P + ++ +R+IPIR DDEV ++RG +KG G++ YR K+V+H++++TR+KANG
Sbjct: 33 PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGNTGRVLRCYRKKFVIHIDKITREKANGS 92
Query: 391 SVPLGIHPS 417
+V +GIHPS
Sbjct: 93 TVHIGIHPS 101
Score = 44.3 bits (103), Expect(2) = 1e-21
Identities = 21/38 (55%), Positives = 24/38 (62%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELR 230
K+NP V HF APS +RR IMSAPL+KELR
Sbjct: 2 KVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELR 39
>ref|XP_018119.1| similar to ribosomal protein L26 (H. sapiens) [Homo sapiens]
Length = 99
Score = 96.3 bits (238), Expect = 9e-20
Identities = 50/80 (62%), Positives = 64/80 (79%), Gaps = 5/80 (6%)
Frame = +1
Query: 253 IPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCVI 429
+PIRKDDEV +V G KG++ GK+ VYR KYV+++ERV R+KANG +V +GIHPS VI
Sbjct: 1 MPIRKDDEVQVVHGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVI 60
Query: 430 TKLKLDKDREDILRR----YKVGRE 492
T+LKLDKD E IL R +VG+E
Sbjct: 61 TRLKLDKDCEKILERKAKSCQVGKE 85
>ref|XP_017690.1| similar to ribosomal protein L26 (H. sapiens) [Homo sapiens]
Length = 145
Score = 95.5 bits (236), Expect = 2e-19
Identities = 48/84 (57%), Positives = 63/84 (74%), Gaps = 1/84 (1%)
Frame = +1
Query: 241 NVRSIPIRKDDEVTIVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPS 417
N RS+PIRKDDEV +VRG +G++ GK+ VYR KYV+++E V R+KANG +V +GIH S
Sbjct: 43 NERSMPIRKDDEVQVVRGHYEGQQIGKVVQVYRKKYVIYIEWVQREKANGTTVHIGIHSS 102
Query: 418 NCVITKLKLDKDREDILRRYKVGRE 492
VIT+LKLDKD + IL R R+
Sbjct: 103 KVVITRLKLDKDSKKILERKAKSRQ 127
Score = 38.5 bits (88), Expect = 0.023
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQGERPLYPHPKGR-----RGH 281
K NP V HF APS RR IMS+ LSKELR++ P K RGH
Sbjct: 2 KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSLLSKELRQKYNERSMPIRKDDEVQVVRGH 61
Query: 282 H 284
+
Sbjct: 62 Y 62
>sp|P51414|RL26_ARATH 60S RIBOSOMAL PROTEIN L26
Length = 87
Score = 84.0 bits (206), Expect(2) = 9e-19
Identities = 38/55 (69%), Positives = 46/55 (83%)
Frame = +1
Query: 244 VRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGI 408
VRSIPIRKDDEV IVRG++KGREGK+ VYR K+V+H+ER+TR+K NG V GI
Sbjct: 33 VRSIPIRKDDEVQIVRGTSKGREGKVVQVYRRKWVIHIERITREKVNGTPVTFGI 87
Score = 29.6 bits (65), Expect(2) = 9e-19
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = +3
Query: 165 HFKAPSDQRRVIMSAPLSKELREQ 236
HF A S +RRVI S+PLS +L ++
Sbjct: 7 HFTAXSSERRVIXSSPLSTDLXQK 30
>ref|XP_012663.2| ribosomal protein L26 [Homo sapiens]
Length = 94
Score = 84.0 bits (206), Expect = 5e-16
Identities = 41/70 (58%), Positives = 54/70 (76%), Gaps = 1/70 (1%)
Frame = +1
Query: 283 IVRGSNKGRE-GKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCVITKLKLDKDRE 459
+VRG KG++ GK+ VYR KYV+++ERV R+KANG +V +GIHPS VIT+LKLDKDR+
Sbjct: 6 VVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRK 65
Query: 460 DILRRYKVGRE 492
IL R R+
Sbjct: 66 KILERKAKSRQ 76
>pir||C71186 probable ribosomal protein L24 - Pyrococcus horikoshii
dbj|BAA30882.1| (AP000007) 124aa long hypothetical 50S ribosomal protein L24
[Pyrococcus horikoshii]
Length = 124
Score = 66.6 bits (161), Expect(2) = 7e-14
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQ 390
P + + VR++P+R D+V I+RG KG EGK+ V +Y ++VE VT K NG
Sbjct: 33 PLSKELREKYKVRNLPVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVEGVTLRKVNGT 92
Query: 391 SVPLGIHPSNCVITKLKLDKD-REDILRR 474
V IHPSN +I +L LD + R+ I+ R
Sbjct: 93 EVFYPIHPSNVMIIELNLDDEKRKKIIER 121
Score = 30.4 bits (67), Expect(2) = 7e-14
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = +3
Query: 168 FKAPSDQRRVIMSAPLSKELREQ 236
+ AP R+ +MSAPLSKELRE+
Sbjct: 19 YNAPLHVRQKMMSAPLSKELREK 41
>sp|O59429|RL24_PYRHO 50S RIBOSOMAL PROTEIN L24P
Length = 121
Score = 66.6 bits (161), Expect(2) = 7e-14
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQ 390
P + + VR++P+R D+V I+RG KG EGK+ V +Y ++VE VT K NG
Sbjct: 30 PLSKELREKYKVRNLPVRVGDKVRIMRGDFKGYEGKVVEVDLKRYRIYVEGVTLRKVNGT 89
Query: 391 SVPLGIHPSNCVITKLKLDKD-REDILRR 474
V IHPSN +I +L LD + R+ I+ R
Sbjct: 90 EVFYPIHPSNVMIIELNLDDEKRKKIIER 118
Score = 30.4 bits (67), Expect(2) = 7e-14
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = +3
Query: 168 FKAPSDQRRVIMSAPLSKELREQ 236
+ AP R+ +MSAPLSKELRE+
Sbjct: 16 YNAPLHVRQKMMSAPLSKELREK 38
>sp|O26122|RL24_METTH 50S RIBOSOMAL PROTEIN L24P
pir||C69053 ribosomal protein L24 - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB84515.1| (AE000795) ribosomal protein L26 (E.coli L24) [Methanothermobacter
thermautotrophicus]
Length = 117
Score = 62.4 bits (150), Expect(2) = 6e-13
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +1
Query: 247 RSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
RS+P+RK D+V I+RG +G EGK+ V +Y V+VE T K +G +V +HPSN
Sbjct: 39 RSLPLRKGDKVEILRGDFRGHEGKVEKVDLKRYRVYVEGATIQKVDGTTVYFPLHPSNLR 98
Query: 427 ITKLKLDKDR 456
I L LD ++
Sbjct: 99 IVDLNLDDEK 108
Score = 31.6 bits (70), Expect(2) = 6e-13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 168 FKAPSDQRRVIMSAPLSKELREQGERPLYPHPKG 269
++AP RR +MSA LS+ELRE+ R P KG
Sbjct: 13 YEAPLHARRKMMSANLSRELREEYGRRSLPLRKG 46
>sp|Q9YF83|RL24_AERPE 50S RIBOSOMAL PROTEIN L24P
pir||E72727 probable ribosomal protein L24 APE0358 - Aeropyrum pernix (strain
K1)
dbj|BAA79313.1| (AP000059) 132aa long hypothetical 50S ribosomal protein L24
[Aeropyrum pernix]
Length = 132
Score = 67.8 bits (164), Expect = 4e-11
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +1
Query: 163 LTSRLPLTSAVLS*ALPSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLK 342
L +R L SA LS P R + VRS+P+RK D+V ++RG KG EGK+ V +
Sbjct: 22 LHARQKLVSATLS---PELRE---KYGVRSLPVRKGDKVRVMRGDFKGHEGKVVKVDLRR 75
Query: 343 YVVHVERVTRDKANGQSVPLGIHPSNCVITKLKL-DKDREDILRRYKVGR 489
++++ VT KA+G V IHPSN +I +L L D+ R+ ++ R GR
Sbjct: 76 LRIYIDGVTVTKADGTPVFRPIHPSNVMIVELDLSDEYRKKMIERRAAGR 125
>ref|NP_126021.1| LSU ribosomal protein L24P [Pyrococcus abyssi]
sp|Q9V1U7|RL24_PYRAB 50S RIBOSOMAL PROTEIN L24P
pir||E75146 lsu ribosomal protein l24p (rpl24p) PAB2128 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49252.1| (AJ248284) LSU ribosomal protein L24P (rpl24P) [Pyrococcus abyssi]
Length = 121
Score = 67.4 bits (163), Expect = 5e-11
Identities = 35/94 (37%), Positives = 52/94 (55%)
Frame = +1
Query: 205 ALPSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKAN 384
A P + + +R++P+R D+V I+RG KG EGK+ V +Y ++VE T K N
Sbjct: 28 AAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVEVDLKRYRIYVEGATLRKTN 87
Query: 385 GQSVPLGIHPSNCVITKLKLDKDREDILRRYKVG 486
G V IHPSN +I +L LD +R + + G
Sbjct: 88 GTEVFYPIHPSNVMIIELNLDDERRKKIIERRAG 121
>sp|P14034|RL24_METVA 50S RIBOSOMAL PROTEIN L24P
pir||R5MX24 ribosomal protein L24 - Methanococcus vannielii
emb|CAA34691.1| (X16720) rpL24 (AA 1-119) [Methanococcus vannielii]
Length = 119
Score = 60.8 bits (146), Expect = 4e-09
Identities = 36/103 (34%), Positives = 59/103 (56%)
Frame = +1
Query: 151 RAVLLTSRLPLTSAVLS*ALPSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSV 330
R L + L L ++V+S L ++ + ++P++K D V ++RGS KG EG+++ V
Sbjct: 13 RKALYNAPLHLRNSVMSAMLS--KALKEKYGKNALPVKKGDTVKVLRGSFKGIEGEVSKV 70
Query: 331 YRLKYVVHVERVTRDKANGQSVPLGIHPSNCVITKLKLDKDRE 459
Y + VE V K +G+ P IHPSN +ITK++ D D +
Sbjct: 71 NYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMITKME-DSDEK 112
>sp|P54038|RL24_METJA 50S RIBOSOMAL PROTEIN L24P
pir||C64358 ribosomal protein L24 - Methanococcus jannaschii
gb|AAB98456.1| (U67497) LSU ribosomal protein L24P (rplX) [Methanococcus
jannaschii]
Length = 120
Score = 60.8 bits (146), Expect = 4e-09
Identities = 38/103 (36%), Positives = 55/103 (52%)
Frame = +1
Query: 151 RAVLLTSRLPLTSAVLS*ALPSPRSSVSRANVRSIPIRKDDEVTIVRGSNKGREGKITSV 330
R L + L L V+S L + + +IP+RK D V I+RG KG EG++ V
Sbjct: 13 RKALFNAPLHLRRKVMSAMLS--KELKEKLGKNAIPVRKGDVVRIMRGDFKGLEGEVIKV 70
Query: 331 YRLKYVVHVERVTRDKANGQSVPLGIHPSNCVITKLKLDKDRE 459
+Y ++VE + +G+ VP IHPSN +I KL DKD +
Sbjct: 71 DLKRYRIYVEGANNKRQDGREVPYPIHPSNVMIIKL-YDKDEK 112
>sp|Q9UX95|RL24_SULSO 50S RIBOSOMAL PROTEIN L24P
emb|CAB57597.1| (Y18930) ribosomal protein L24 (HMAL24) [Sulfolobus solfataricus]
gb|AAK41008.1| (AE006696) LSU ribosomal protein L24AB (rpl24AB) [Sulfolobus
solfataricus]
Length = 119
Score = 57.0 bits (136), Expect = 6e-08
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 232 SRANVRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIH 411
S+ ++ I +RK D V ++RG N G+EGK+ V + +E +TR K +G V + IH
Sbjct: 35 SQYGIKRIRVRKGDTVRVMRGGNSGKEGKVVEVNTKTGRLAIEGITRKKVDGTPVYVWIH 94
Query: 412 PSNCVITKLKL-DKDREDILRRYK 480
S +ITKL L D R + L + K
Sbjct: 95 ASKVMITKLDLSDPRRREKLEKSK 118
>ref|NP_070739.1| LSU ribosomal protein L24P (rpl24P) [Archaeoglobus fulgidus]
sp|O28365|RL24_ARCFU 50S RIBOSOMAL PROTEIN L24P
pir||A69489 LSU ribosomal protein L24P (rpl24P) homolog - Archaeoglobus
fulgidus
gb|AAB89339.1| (AE000971) LSU ribosomal protein L24P (rpl24P) [Archaeoglobus
fulgidus]
Length = 120
Score = 56.2 bits (134), Expect = 1e-07
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +1
Query: 247 RSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
R+I +RK D+V I+RG G EG++ V + + V+ VT KA+G V + IHPSN +
Sbjct: 44 RAIRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITVDGVTVTKADGTEVAVPIHPSNVM 103
Query: 427 ITKL-KLDKDREDILRR 474
IT ++D+ R+ IL R
Sbjct: 104 ITDFGEVDEVRKKILER 120
>pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1GIY|U Chain U, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
Length = 119
Score = 52.8 bits (125), Expect = 1e-06
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +1
Query: 247 RSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
R++ + D V ++RG G EG++ +V K V+HVE VT +K +G+ VP + SN
Sbjct: 38 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVR 97
Query: 427 ITKLKLDKDRED 462
+T L L+ ++ +
Sbjct: 98 VTDLDLEDEKRE 109
>sp|P10972|RL24_HALMA 50S RIBOSOMAL PROTEIN L24P (HMAL24) (HL16) (HL15)
pir||R5HS24 ribosomal protein L24 [validated] - Haloarcula marismortui
emb|CAA39019.1| (X55311) ribosomal protein HmaL24 [Haloarcula marismortui]
Length = 120
Score = 52.8 bits (125), Expect = 1e-06
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +1
Query: 247 RSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
R++ + D V ++RG G EG++ +V K V+HVE VT +K +G+ VP + SN
Sbjct: 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVR 98
Query: 427 ITKLKLDKDRED 462
+T L L+ ++ +
Sbjct: 99 VTDLDLEDEKRE 110
>prf||1501256A ribosomal protein L16 [Haloarcula marismortui]
Length = 118
Score = 52.8 bits (125), Expect = 1e-06
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +1
Query: 247 RSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
R++ + D V ++RG G EG++ +V K V+HVE VT +K +G+ VP + SN
Sbjct: 37 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVR 96
Query: 427 ITKLKLDKDRED 462
+T L L+ ++ +
Sbjct: 97 VTDLDLEDEKRE 108
>sp|O05633|RL24_SULAC 50S RIBOSOMAL PROTEIN L24P
emb|CAA69088.1| (Y07778) ribosomal protein L24 [Sulfolobus acidocaldarius]
Length = 84
Score = 51.2 bits (121), Expect = 3e-06
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 283 IVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCVITKLKL-DKDRE 459
++RGS G EGK+ V R + V +E +T+ KA+G V + +H S +ITKL DK+R
Sbjct: 2 LMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIITKLDTGDKERM 61
Query: 460 DILRRYKVGRE 492
D + R + RE
Sbjct: 62 DAIERKRKMRE 72
>ref|NP_110855.1| 50S ribosomal protein L24 [Thermoplasma volcanium]
dbj|BAB59482.1| (AP000992) ribosomal protein large subunit L26 [Thermoplasma
volcanium]
Length = 145
Score = 47.8 bits (112), Expect = 4e-05
Identities = 27/69 (39%), Positives = 36/69 (52%)
Frame = +1
Query: 244 VRSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNC 423
+RS PI K D V +V G+ KG GK+ V +V VE +T K +G+ GI P
Sbjct: 19 IRSFPIVKGDVVKVVSGARKGEGGKVAEVDHHSGLVIVEGITIAKIDGKQKGFGISPEKL 78
Query: 424 VITKLKLDK 450
IT L L +
Sbjct: 79 QITHLDLSR 87
>sp|P41960|RL26_BRUPA 60S RIBOSOMAL PROTEIN L26
Length = 60
Score = 34.3 bits (77), Expect(2) = 3e-04
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRG 294
PS + ++ +RSIPIR DDEVT+ RG
Sbjct: 33 PSTKDLRNKHGIRSIPIRIDDEVTVTRG 60
Score = 30.0 bits (66), Expect(2) = 3e-04
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K N V F APS RR +MSAP +K+LR +
Sbjct: 2 KQNQFVSSSARKARKAPFNAPSHIRRKLMSAPSTKDLRNK 41
>emb|CAA57759.1| (X82316) ribosomal protein L26 [Brugia pahangi]
Length = 61
Score = 34.3 bits (77), Expect(2) = 3e-04
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDEVTIVRG 294
PS + ++ +RSIPIR DDEVT+ RG
Sbjct: 33 PSTKDLRNKHGIRSIPIRIDDEVTVTRG 60
Score = 30.0 bits (66), Expect(2) = 3e-04
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K N V F APS RR +MSAP +K+LR +
Sbjct: 2 KQNQFVSSSARKARKAPFNAPSHIRRKLMSAPSTKDLRNK 41
>ref|XP_017309.1| similar to ribosomal protein L26 (H. sapiens) [Homo sapiens]
Length = 49
Score = 39.7 bits (91), Expect = 0.010
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +3
Query: 117 KINPSVXXXXXXXXXXHFKAPSDQRRVIMSAPLSKELREQ 236
K NP V HF APS RR I S+PLSKELR++
Sbjct: 2 KFNPFVTSHRSKNRKRHFNAPSHIRRKITSSPLSKELRQK 41
>gb|AAF07848.1|AF201839_1 (AF201839) dynamin IIIbb isoform [Rattus norvegicus]
Length = 869
Score = 37.0 bits (84), Expect = 0.066
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 174 APSDQRRVIMSAPLSKELREQGERPLYPHPKGRRGHHCPWFQQG-----P*GQDHLRVPS 338
+P+ QRR+ +SAPL + +G P P P G F+ G P D P
Sbjct: 773 SPTTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPNSSDSYGAPP 832
Query: 339 QVRC-PCRACHPRQGQRPVRSPGHP 410
QV P RA +RP SP P
Sbjct: 833 QVPSRPTRAPPSVPSRRPPPSPTRP 857
>sp|Q9ZI41|RL24_AQUPY 50S RIBOSOMAL PROTEIN L24
gb|AAD08794.1| (AF040101) ribosomal protein L24 [Aquifex pyrophilus]
Length = 131
Score = 36.6 bits (83), Expect = 0.086
Identities = 19/48 (39%), Positives = 26/48 (53%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPL 402
I+K D V +VRG KG++GK+ VY+ RV R G+ V L
Sbjct: 5 IKKGDTVVVVRGKEKGKQGKVLKVYK--------RVKRRNKKGEPVSL 44
>ref|NP_113271.1| 60S ribosomal protein L26 [Guillardia theta]
gb|AAK39831.1|AF165818_39 (AF165818) 60S ribosomal protein L26 [Guillardia theta]
Length = 108
Score = 36.6 bits (83), Expect = 0.086
Identities = 16/64 (25%), Positives = 37/64 (57%)
Frame = +1
Query: 247 RSIPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
+++ ++K+ E+ + RG KG+ GK+ + + + V+ + R+K ++ + + PSN
Sbjct: 45 KTLILKKNYEIKVKRGDFKGKTGKVIQIKPEQQKIFVDNIFRNKFEKTNIFVPLKPSNIQ 104
Query: 427 ITKL 438
I K+
Sbjct: 105 IIKI 108
>dbj|BAA74843.1| (AB020627) KIAA0820 protein [Homo sapiens]
Length = 702
Score = 36.2 bits (82), Expect = 0.11
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 174 APSDQRRVIMSAPLSKELREQGERPLYPHPKGRRGHHCPWFQQG-----P*GQDHLRVPS 338
+P+ QRR +SAPL++ +G P P P G F+ G P D P
Sbjct: 606 SPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPSSSDSFGAPP 665
Query: 339 QVRC-PCRACHPRQGQRPVRSPGHP 410
QV P RA +RP SP P
Sbjct: 666 QVPSRPTRAPPSVPSRRPPPSPTRP 690
>emb|CAB10072.1| (Z97195) match: multiple proteins; match: Q08877 Q61360 Q61359
Q05193 P21575; match: P39053 P50570 P39054 P39052
P27619; match: P39055 Q93176 O00429 Q22428 Q94464;
match: multiple cDNAs; match: D14076 L25605 L31395
L29457 L31398; match: L24562 L36983 X>
Length = 232
Score = 36.2 bits (82), Expect = 0.11
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 174 APSDQRRVIMSAPLSKELREQGERPLYPHPKGRRGHHCPWFQQG-----P*GQDHLRVPS 338
+P+ QRR +SAPL++ +G P P P G F+ G P D P
Sbjct: 136 SPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPSSSDSFGAPP 195
Query: 339 QVRC-PCRACHPRQGQRPVRSPGHP 410
QV P RA +RP SP P
Sbjct: 196 QVPSRPTRAPPSVPSRRPPPSPTRP 220
>emb|CAB66647.1| (AL136712) hypothetical protein [Homo sapiens]
Length = 863
Score = 35.8 bits (81), Expect = 0.15
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 174 APSDQRRVIMSAPLSKELREQGERPLYPHPKGRRGHHCPWFQQG-----P*GQDHLRVPS 338
+P+ QRR +SAPL++ +G P P P G F+ G P D P
Sbjct: 767 SPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPSSSDSFGAPP 826
Query: 339 QVRC-PCRACHPRQGQRPVRSPGHP 410
QV P RA +RP SP P
Sbjct: 827 QVPSRPTRAPPRVPSRRPPPSPTRP 851
>sp|P02425|RL24_ECOLI 50S RIBOSOMAL PROTEIN L24
pir||R5EC24 ribosomal protein L24 [validated] - Escherichia coli
emb|CAA25716.1| (X01563) L24 (rp1X) (aa 1-104) [Escherichia coli]
gb|AAA58106.1| (U18997) 50S ribosomal subunit protein L24 [Escherichia coli]
gb|AAC76334.1| (AE000408) 50S ribosomal subunit protein L24 [Escherichia coli K12]
gb|AAG58430.1|AE005556_23 (AE005556) 50S ribosomal subunit protein L24 [Escherichia coli
O157:H7 EDL933]
dbj|BAB37597.1| (AP002564) 50S ribosomal subunit protein L24 [Escherichia coli
O157:H7]
Length = 104
Score = 35.4 bits (80), Expect = 0.19
Identities = 20/56 (35%), Positives = 31/56 (54%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
IR+DDEV ++ G +KG+ GK+ +V V+ VE + K + + VP P V
Sbjct: 5 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVI-VEGINLVKKHQKPVPALNQPGGIV 59
>sp|Q9Z7R8|RL24_CHLPN 50S RIBOSOMAL PROTEIN L24
pir||F72054 ribosomal protein L24 CP0111 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39)
gb|AAD18775.1| (AE001647) L24 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
gb|AAF37994.1| (AE002173) ribosomal protein L24 [Chlamydophila pneumoniae AR39]
dbj|BAA98843.1| (AP002547) L24 ribosomal protein [Chlamydophila pneumoniae J138]
Length = 111
Score = 35.0 bits (79), Expect = 0.25
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 9/58 (15%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYV-----VHVERVTRDKANGQ----SVPLGIH 411
IR D+V I+ G++KG+EGK+ S+ K V V ++ + R + N + S+ IH
Sbjct: 6 IRVGDKVFILAGNDKGKEGKVLSLTEDKVVVEGVNVRIKNIKRSQQNPKGKRISIEAPIH 65
Query: 412 PSNCVIT 432
SN +T
Sbjct: 66 ISNVRLT 72
>sp|O67569|RL24_AQUAE 50S RIBOSOMAL PROTEIN L24
pir||H70442 ribosomal protein L24 - Aquifex aeolicus
gb|AAC07534.1| (AE000749) ribosomal protein L24 [Aquifex aeolicus]
Length = 132
Score = 35.0 bits (79), Expect = 0.25
Identities = 19/46 (41%), Positives = 24/46 (51%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSV 396
I+K D V +VRG KG++GK+ VY ERV R G V
Sbjct: 6 IKKGDTVLVVRGKEKGKQGKVLKVY--------ERVKRRDKQGNPV 43
>pir||C82058 ribosomal protein L24 VC2585 [imported] - Vibrio cholerae (group
O1 strain N16961)
gb|AAF95726.1| (AE004326) ribosomal protein L24 [Vibrio cholerae]
Length = 105
Score = 35.0 bits (79), Expect = 0.25
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVP 399
IR++DEV ++ G +KG++GK+T V V+ VE + K + + VP
Sbjct: 5 IRQNDEVIVLAGKDKGKKGKVTKVLATGKVI-VEGINLVKKHQKPVP 50
>sp|P49629|RL26_XENLA 60S RIBOSOMAL PROTEIN L26
pir||S22603 ribosomal protein L26, cytosolic - African clawed frog (fragment)
emb|CAB56811.1| (X64211) ribosomal protein L24 [Xenopus laevis]
Length = 33
Score = 28.9 bits (63), Expect(2) = 0.25
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 177 PSDQRRVIMSAPLSKELREQ 236
PS RR IMS PLSKELR++
Sbjct: 1 PSHVRRKIMSWPLSKELRQK 20
Score = 25.4 bits (54), Expect(2) = 0.25
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 211 PSPRSSVSRANVRSIPIRKDDE 276
P + + +VRS+PIRKDDE
Sbjct: 12 PLSKELRQKYSVRSMPIRKDDE 33
>sp|P46177|RL24_BUCAK 50S RIBOSOMAL PROTEIN L24
pir||JC2277 ribosomal protein L24 - pea aphid symbiont bacterium
dbj|BAA06586.1| (D31786) ribosomal protein L24 [Acyrthosiphon kondoi endosymbiont]
Length = 104
Score = 34.3 bits (77), Expect = 0.43
Identities = 19/56 (33%), Positives = 31/56 (54%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCV 426
IR++DEV ++ G +KG+ GK+ +V V+ VE + K + + VP P V
Sbjct: 5 IRREDEVIVITGKDKGKRGKVKNVLSSGKVI-VEGINLVKKHQKPVPALNQPGGFV 59
>sp|P10141|RL24_MYCCA 50S RIBOSOMAL PROTEIN L24
pir||R5YM24 ribosomal protein L24 - Mycoplasma capricolum
emb|CAA29715.1| (X06414) ribosomal protein L24 (AA 1-108) [Mycoplasma capricolum]
Length = 108
Score = 34.3 bits (77), Expect = 0.43
Identities = 25/66 (37%), Positives = 38/66 (56%), Gaps = 10/66 (15%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVV---------HVERVTRDKANG-QSVPLGI 408
I K D V ++ GS+KG+ G ITS+ + K V HV+ D G + +P +
Sbjct: 6 ILKGDVVKVIAGSHKGQIGPITSITKDKQWVSVQGITVKKHVKPTNEDSEGGIKDIPAKL 65
Query: 409 HPSNCVITKLKLDKDR 456
H SN + K +KD+
Sbjct: 66 HISNVALQDPK-NKDQ 80
>sp|P33103|RL24_MICLU 50S RIBOSOMAL PROTEIN L24
pir||S29883 Ribosomal protein L24 - Micrococcus luteus
emb|CAA35559.1| (X17524) L24 protein [Micrococcus luteus]
Length = 113
Score = 34.3 bits (77), Expect = 0.43
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTR 372
I+KDD V ++ G +KG++GK+ V+ V VE V R
Sbjct: 4 IKKDDLVQVISGKDKGKQGKVLRVFPTDERVLVEGVNR 41
>emb|CAB82081.1| (AL161803) 50S ribosomal protein L24 [Streptomyces coelicolor
A3(2)]
Length = 107
Score = 33.9 bits (76), Expect = 0.56
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 14/72 (19%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLG----------- 405
I+K D V ++ G +KG++GK+ + + + V VE V R K + ++ P
Sbjct: 3 IKKGDLVQVITGKDKGKQGKVIAAFPREDRVLVEGVNRVKKHTKAGPTARGSQAGGIVTT 62
Query: 406 ---IHPSNCVITKLKLDKDREDILRR 474
IH SN +L ++KD ++ R
Sbjct: 63 EAPIHVSN---VQLVVEKDGNKVVTR 85
>sp|O32994|RL24_MYCLE 50S RIBOSOMAL PROTEIN L24
pir||T45377 ribosomal protein L24 [imported] - Mycobacterium leprae
emb|CAB11447.1| (Z98756) ribosomal protein L24 [Mycobacterium leprae]
emb|CAC30802.1| (AL583923) 50S ribosomal protein L24 [Mycobacterium leprae]
Length = 105
Score = 33.9 bits (76), Expect = 0.56
Identities = 27/78 (34%), Positives = 40/78 (50%), Gaps = 14/78 (17%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDK------ANGQSVPLG----- 405
+ K D V ++ G +KG +GK+ Y + V VE V R K AN + G
Sbjct: 3 VHKGDTVLVIAGKDKGAKGKVLQAYPARNRVLVEGVNRIKKHTAISANQRGAQAGGIVTQ 62
Query: 406 ---IHPSNCVITKLKLDKDREDILRRYKVGRE 492
IH SN ++ +D D + Y+V E
Sbjct: 63 EAPIHVSNVMV----VDSDGKPTRIGYRVDEE 90
>sp|Q08877|DYN3_RAT DYNAMIN 3 (DYNAMIN, TESTICULAR) (T-DYNAMIN)
pir||I55498 testicular dynamin - rat
dbj|BAA03161.1| (D14076) testicular dynamin [Rattus norvegicus]
Length = 848
Score = 33.5 bits (75), Expect = 0.73
Identities = 23/80 (28%), Positives = 32/80 (39%)
Frame = +3
Query: 174 APSDQRRVIMSAPLSKELREQGERPLYPHPKGRRGHHCPWFQQGP*GQDHLRVPSQVRCP 353
+P+ QRR+ +SAPL + +G P P P G F+ GP P
Sbjct: 763 SPTTQRRLTLSAPLPRPASSRGPAPAIPSPGPHSGAPPVPFRPGP------LPPFPNSSD 816
Query: 354 CRACHPRQGQRPVRSPGHPP 413
P+ RP R+P P
Sbjct: 817 SYGAPPQVPSRPTRAPPSVP 836
>sp|Q9XD25|RL24_LEPIN 50S RIBOSOMAL PROTEIN L24
gb|AAD40594.1|AF115283_13 (AF115283) ribosomal protein L24 [Leptospira interrogans]
Length = 119
Score = 33.1 bits (74), Expect = 0.96
Identities = 15/40 (37%), Positives = 26/40 (64%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDK 378
I+K+DEV + G +KG+ GK+ S+ + + V VE + + K
Sbjct: 19 IKKNDEVICITGKHKGKRGKVLSIDKKRDRVIVEGLNKRK 58
>gb|AAF80592.1|AF223948_1 (AF223948) biotin carboxyl carrier protein isoform 2 [Arabidopsis
thaliana]
Length = 255
Score = 32.7 bits (73), Expect = 1.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 164 SLQGSL*PAPCYHERSPLQG--AP*AGRTSALSPSERTTRSPLSVVPTRAVRARSPP 328
+LQ ++ PAP YH P+ + + AL PS T +P + PT A + PP
Sbjct: 124 ALQQAVPPAPVYHSMPPVMADFSMPPAQPVALPPSPTPTSTPATAKPTSAPSSSHPP 180
>pir||T51531 biotin carboxyl carrier protein homolog T20K14.140 [imported] -
Arabidopsis thaliana
emb|CAC01752.1| (AL391143) biotin carboxyl carrier protein precursor-like protein
[Arabidopsis thaliana]
Length = 333
Score = 32.7 bits (73), Expect = 1.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 164 SLQGSL*PAPCYHERSPLQG--AP*AGRTSALSPSERTTRSPLSVVPTRAVRARSPP 328
+LQ ++ PAP YH P+ + + AL PS T +P + PT A + PP
Sbjct: 145 ALQQAVPPAPVYHSMPPVMADFSMPPAQPVALPPSPTPTSTPATAKPTSAPSSSHPP 201
>sp|P38513|RL24_THEMA 50S RIBOSOMAL PROTEIN L24
pir||S40199 ribosomal protein L24 - Thermotoga maritima (strain MSB8)
emb|CAA79788.1| (Z21677) ribosomal protein L24 [Thermotoga maritima]
gb|AAD36555.1|AE001798_20 (AE001798) ribosomal protein L24 [Thermotoga maritima]
Length = 105
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVP 399
I+K D V ++ G +KG+ GK+ V + V VE V K + + VP
Sbjct: 3 IKKGDLVEVISGKDKGKRGKVLRVIPKENKVIVENVNMVKRHQRPVP 49
>pir||S43192 ribosomal protein L24 - Thermus aquaticus
emb|CAA83517.1| (Z31726) ribosomal protein L24 [Thermus thermophilus]
Length = 110
Score = 32.7 bits (73), Expect = 1.2
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERV 366
++K D V + G KGR GK+ V KY V VE V
Sbjct: 7 VKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGV 42
>pir||B83115 50S ribosomal protein L24 PA4252 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07640.1|AE004841_18 (AE004841) 50S ribosomal protein L24 [Pseudomonas aeruginosa]
Length = 104
Score = 32.7 bits (73), Expect = 1.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSV 330
IR+DDEV ++ G +KG+ GK+ V
Sbjct: 4 IRRDDEVIVIAGKDKGKRGKVLKV 27
>emb|CAB55736.1| (AL117387) putative ABC transport protein [Streptomyces coelicolor
A3(2)]
Length = 589
Score = 32.3 bits (72), Expect = 1.6
Identities = 30/115 (26%), Positives = 47/115 (40%)
Frame = -1
Query: 386 PLALSRVTRSTWTTYLRRYTEVILPSRPLLEPRTMVTSSSFRMGIERTFALLTELLGEGS 207
P L R+ R +W T RR +++L + L T + + + T + +LG+GS
Sbjct: 6 PAVLGRIARLSWRTD-RRAVQLLLGCQVL-------TGLAAAVLLTATAHAMNPVLGDGS 57
Query: 206 AHDNTALVRGSLEVSSTALAARRSXXXXXXXXXXXXLARTTLES*SSNEERIGRV 42
A D +L V + A A R R T E+ S+ E + RV
Sbjct: 58 AADRLHGALPALSVVALAAALGRGAAAVATYAERRITPRLTTETDSALVEAVCRV 112
>sp|P08488|GLT3_WHEAT GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12 PRECURSOR
pir||A24266 glutenin high molecular weight chain 12 precursor - wheat
emb|CAA26847.1| (X03041) 1Dy-HMW-glutenin (aa 1-660) [Triticum aestivum]
Length = 660
Score = 32.0 bits (71), Expect = 2.1
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 201 MSAPLSKELREQGERPLYPHP-----KGRRGHHCPWFQQGP*GQDHLRVPSQVRCPCRAC 365
+ P + + QG++ YP +G++GH+ QQ GQ P Q + P +
Sbjct: 432 LQQPGQGQQQGQGQQGYYPTSLQQPGQGQQGHYPASLQQPGQGQGQ---PGQRQQPGQGQ 488
Query: 366 HPRQGQRP 389
HP QGQ+P
Sbjct: 489 HPEQGQQP 496
>sp|P44362|RL24_HAEIN 50S RIBOSOMAL PROTEIN L24
pir||G64093 ribosomal protein L24 - Haemophilus influenzae (strain Rd KW20)
gb|AAC22447.1| (U32762) ribosomal protein L24 (rpL24) [Haemophilus influenzae Rd]
Length = 103
Score = 32.0 bits (71), Expect = 2.1
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSV 330
IR++DEV ++ G +KG+ GK+T V
Sbjct: 5 IRQNDEVIVLTGKDKGKRGKVTKV 28
>pir||D81267 50S ribosomal protein L24 Cj1696c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73682.1| (AL139079) 50S ribosomal protein L24 [Campylobacter jejuni]
Length = 77
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 253 IPIRKDDEVTIVRGSNKGREGKITSVY--RLKYVV 351
+ I+K D V ++ G +KG+ GK+ +VY LK VV
Sbjct: 5 LKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVV 39
>sp|Q9CL41|RL24_PASMU 50S RIBOSOMAL PROTEIN L24
gb|AAK03488.1| (AE006177) RpL24 [Pasteurella multocida]
Length = 103
Score = 32.0 bits (71), Expect = 2.1
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSV 330
IR++DEV ++ G +KG+ GK+T V
Sbjct: 5 IRQNDEVIVLAGKSKGKRGKVTQV 28
>emb|CAC38033.1| (AJ306974) glutenin HMW subunit 1Dy [Aegilops cylindrica]
Length = 654
Score = 31.6 bits (70), Expect = 2.8
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 201 MSAPLSKELREQGERPLYPHP-----KGRRGHHCPWFQQGP*GQDHLRVPSQVRCPCRAC 365
+ P + + QG++ YP +G++GH+ QQ GQ P Q + P +
Sbjct: 434 LQQPGQGQQQGQGQQGYYPTSLQQPGQGQQGHYPASLQQPGQGQ-----PGQRQQPGQGQ 488
Query: 366 HPRQGQRP 389
HP QGQ+P
Sbjct: 489 HPEQGQQP 496
>ref|XP_010585.2| Ser/Arg-related nuclear matrix protein (plenty of prolines
101-like) [Homo sapiens]
Length = 573
Score = 31.6 bits (70), Expect = 2.8
Identities = 32/106 (30%), Positives = 36/106 (33%)
Frame = +2
Query: 83 ASSSPNHRHNDQDQPLRRFFSPQEPCCSLQGSL*PAPCYHERSPLQGAP*AGRTSALSPS 262
AS SP R + RR SP P P RSP P R + P
Sbjct: 198 ASPSPRKRQKETSPRGRRRRSPSPP-----------PTRRRRSPSPAPPPRRRRTPTPPP 246
Query: 263 ERTTRSPLSVVPTRAVRARSPPCXXXXXXXXXXXXPATRPTASPFP 400
R T SP + + R SPP P R TASP P
Sbjct: 247 RRRTPSPPPRRRSPSPRRYSPP----IQRRYSPSPPPKRRTASPPP 288
>ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty of prolines
101-like) [Homo sapiens]
gb|AAC09321.1| (AF048977) Ser/Arg-related nuclear matrix protein [Homo sapiens]
Length = 820
Score = 31.6 bits (70), Expect = 2.8
Identities = 32/106 (30%), Positives = 36/106 (33%)
Frame = +2
Query: 83 ASSSPNHRHNDQDQPLRRFFSPQEPCCSLQGSL*PAPCYHERSPLQGAP*AGRTSALSPS 262
AS SP R + RR SP P P RSP P R + P
Sbjct: 527 ASPSPRKRQKETSPRGRRRRSPSPP-----------PTRRRRSPSPAPPPRRRRTPTPPP 575
Query: 263 ERTTRSPLSVVPTRAVRARSPPCXXXXXXXXXXXXPATRPTASPFP 400
R T SP + + R SPP P R TASP P
Sbjct: 576 RRRTPSPPPRRRSPSPRRYSPP----IQRRYSPSPPPKRRTASPPP 617
>dbj|BAB43331.1| (AP003136) 50S ribosomal protein L24 [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB58401.1| (AP003364) 50S ribosomal protein L24 [Staphylococcus aureus subsp.
aureus Mu50]
Length = 105
Score = 31.6 bits (70), Expect = 2.8
Identities = 18/57 (31%), Positives = 31/57 (53%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDKANGQSVPLGIHPSNCVI 429
I+K D V ++ G +KG+EGK+ + K V VE V K + + P ++P ++
Sbjct: 3 IKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQK--PTQLNPEGGIL 57
>sp|Q9ZCR6|RL24_RICPR 50S RIBOSOMAL PROTEIN L24
pir||F71670 ribosomal protein L24 - Rickettsia prowazekii
emb|CAA15088.1| (AJ235272) 50S RIBOSOMAL PROTEIN L24 (rplX) [Rickettsia prowazekii]
Length = 113
Score = 31.6 bits (70), Expect = 2.8
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = +1
Query: 253 IPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERV 366
+ ++K DEV I+ G KG++GK+ V+ + V V V
Sbjct: 4 LKVKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGV 41
>gb|AAG19319.1| (AE005027) phosphoribosylformylglycinamidine cycloligase; PurM
[Halobacterium sp. NRC-1]
Length = 331
Score = 31.2 bits (69), Expect = 3.6
Identities = 23/51 (45%), Positives = 26/51 (50%)
Frame = -3
Query: 438 ELGDDTVGGVDAQGNGLAVGLVAGDTLDMDNVLETVHGGDLALTALVGTTD 286
ELGD G DA G V LV G+T M +V V G D+A TA TD
Sbjct: 118 ELGDGLAAGADAAG----VALVGGETAVMPDV---VRGFDIAGTAAGVATD 161
>emb|CAC13749.1| (AL445565) 50S RIBOSOMAL PROTEIN L24 [Mycoplasma pulmonis]
Length = 108
Score = 31.2 bits (69), Expect = 3.6
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERV-----------TRDKANGQSVPLG 405
+RK+DEV ++ GS KG +G I V + V V+ V + + + Q+
Sbjct: 5 LRKNDEVIVIAGSYKGTKGTILKVLPKQQRVQVKGVNVVTKHVKPSQSNSEGSIQNFEAP 64
Query: 406 IHPSNCVITKLKLDKDREDI 465
IH SN KD+ I
Sbjct: 65 IHISNVAYVHKSGPKDKSGI 84
>gb|AAD22679.1|AC007063_5 (AC007063) malate oxidoreductase (malic enzyme) [Arabidopsis
thaliana]
Length = 623
Score = 30.8 bits (68), Expect = 4.7
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = +3
Query: 189 RRVIMSAPLSKELREQGERPLYPHPKGRRGHHCPWFQQG 305
RR++ S+ + +G RP H +G H PWF +G
Sbjct: 20 RRILYSSAVRSFTTSEGHRPTIVHKQGLDILHDPWFNKG 58
>sp|O13394|CHS5_USTMA CHITIN SYNTHASE 5 (CHITIN-UDP ACETYL-GLUCOSAMINYL TRANSFERASE 5)
(CLASS-IV CHITIN SYNTHASE 5)
pir||T42020 class IV chitin synthase - smut fungus (Ustilago maydis)
gb|AAB84284.1| (AF030553) class IV chitin synthase [Ustilago maydis]
Length = 1239
Score = 30.8 bits (68), Expect = 4.7
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Frame = +2
Query: 80 PASSSPNHRHNDQDQPLRRFFSPQEPCCSLQGSL*PAPCYHER----------SPLQGAP 229
PA PN R + P + FS +P GS P P +R SPL G+P
Sbjct: 556 PAGYRPNARKHKSFLPAKSRFSVADPLSLKSGSRAPMPLSEKRMTRASRLGVASPLGGSP 615
Query: 230 *AGRTSALSPSERTTRSPLSVVPTRAVRA 316
SPS RS S+ P + R+
Sbjct: 616 PG------SPSVAGGRSSASLAPAHSRRS 638
>sp|P95063|RL24_MYCTU 50S RIBOSOMAL PROTEIN L24
pir||F70643 probable ribosomal protein L24 rplX - Mycobacterium tuberculosis
(strain H37RV)
emb|CAB06439.1| (Z84395) rplX [Mycobacterium tuberculosis]
gb|AAK44974.1| (AE006967) ribosomal protein L24 [Mycobacterium tuberculosis
CDC1551]
Length = 105
Score = 30.8 bits (68), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (54%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERVTRDK 378
+ K D V ++ G +KG +GK+ Y + V VE V R K
Sbjct: 3 VHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIK 42
>gb|AAD25540.1|AF133730_1 (AF133730) Slit1 [Rattus norvegicus]
Length = 1530
Score = 30.4 bits (67), Expect = 6.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 493 APAQPCSGAECPHGPCQA 440
A A+PC G +C HG CQA
Sbjct: 1413 AVAEPCGGLQCLHGHCQA 1430
>gb|AAF35990.1|AC005836_2 (AC005836) L509.2 [Leishmania major]
Length = 2554
Score = 30.4 bits (67), Expect = 6.2
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +2
Query: 209 SPLQGAP*AG--RTSALSPSERTTRSPLSVVPTRAVRARSPPCXX-XXXXXXXXXXPATR 379
SP G+P + + S L PSE +TR +V T A A PP PA
Sbjct: 112 SPCTGSPTSHDFQKSVLPPSESSTRGAAAVAHTAATDAAMPPSLAPSATPPSTFKSPAAS 171
Query: 380 PTASP 394
P SP
Sbjct: 172 PVFSP 176
>ref|NP_075242.1| Slit1 [Rattus norvegicus]
pir||T42218 slit-1 protein homolog - rat
dbj|BAA32460.1| (AB011530) MEGF4 [Rattus norvegicus]
Length = 1531
Score = 30.4 bits (67), Expect = 6.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 493 APAQPCSGAECPHGPCQA 440
A A+PC G +C HG CQA
Sbjct: 1414 AVAEPCGGLQCLHGHCQA 1431
>gb|AAD44758.1|AF144627_1 (AF144627) SLIT1 [Mus musculus]
Length = 1531
Score = 30.4 bits (67), Expect = 6.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 493 APAQPCSGAECPHGPCQA 440
A A+PC G +C HG CQA
Sbjct: 1414 AVAEPCGGLQCLHGHCQA 1431
>emb|CAA51374.1| (X72850) acetyl CoA acetyltransferase [Sphingomonas sp.]
Length = 394
Score = 30.4 bits (67), Expect = 6.2
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 253 IPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVE-RVTRDKANG 387
IP RKDD + I R + + I S+ RLK +VH + VT ++G
Sbjct: 203 IPQRKDDFIVIDRDEHPRHDTTIESLMRLKPIVHPDGTVTAGNSSG 248
>gb|AAF35400.1|AC004145_6 (AC004145) L5801.7R [Leishmania major]
Length = 1886
Score = 30.4 bits (67), Expect = 6.2
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +2
Query: 209 SPLQGAP*AG--RTSALSPSERTTRSPLSVVPTRAVRARSPPCXX-XXXXXXXXXXPATR 379
SP G+P + + S L PSE +TR +V T A A PP PA
Sbjct: 112 SPCTGSPTSHDFQKSVLPPSESSTRGAAAVAHTAATDAAMPPSLAPSATPPSTFKSPAAS 171
Query: 380 PTASP 394
P SP
Sbjct: 172 PVFSP 176
>pir||T01456 extensin homolog F24O1.18 - Arabidopsis thaliana
gb|AAD43602.1|AC005698_1 (AC005698) T3P18.1 [Arabidopsis thaliana]
gb|AAF70841.1|AC003113_8 (AC003113) F24O1.18 [Arabidopsis thaliana]
Length = 786
Score = 30.4 bits (67), Expect = 6.2
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +2
Query: 89 SSPNHRHNDQDQ-PLRRFFSPQEPCCSLQGS---L*PAPCYHERSPLQGAP*AGRTSALS 256
SSP R D + FFSP P + + L P P + SP A +S +S
Sbjct: 365 SSPASRSVDCSKFGCNNFFSPPPPSFKMSPTVRVLPPPPPSSKMSPTFRATPPPPSSKMS 424
Query: 257 PSERTTRSPLSVVPTRAVRARSPP 328
PS R T P S + + RA PP
Sbjct: 425 PSFRATPPPPSSKMSPSFRATPPP 448
>sp|P24318|RL24_THETH 50S RIBOSOMAL PROTEIN L24
pir||S15438 Ribosomal protein L24 - Thermus aquaticus
emb|CAA39895.1| (X56552) ribosomal protein L24 [Thermus aquaticus]
Length = 110
Score = 30.4 bits (67), Expect = 6.2
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = +1
Query: 253 IPIRKDDEVTIVRGSNKGREGKITSVYRLKYVVHVERV 366
+ ++K D V + G KGR GK+ +V K V VE V
Sbjct: 5 VHVKKGDTVLVASGKYKGRVGKVKAVLPRKMAVIVEGV 42
>ref|NP_102131.1| 50S ribosomal protein L24 [Mesorhizobium loti]
dbj|BAB47917.1| (AP002994) 50S ribosomal protein L24 [Mesorhizobium loti]
Length = 104
Score = 30.4 bits (67), Expect = 6.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 259 IRKDDEVTIVRGSNKGREGKITSV 330
IRK D+V ++ G +KGR G++ SV
Sbjct: 4 IRKGDKVVVLAGKDKGRSGEVLSV 27
>gb|AAC15244.1| (U39229) high molecular weight glutenin subunit [Aegilops tauschii]
Length = 648
Score = 30.0 bits (66), Expect = 8.1
Identities = 20/63 (31%), Positives = 33/63 (51%), Gaps = 5/63 (7%)
Frame = +3
Query: 201 MSAPLSKELREQGERPLYPHP-----KGRRGHHCPWFQQGP*GQDHLRVPSQVRCPCRAC 365
+ P + + QG++ YP +G++GH+ QQ GQ P Q + P +
Sbjct: 422 LQQPGQGQQQGQGQQGYYPTSLQQPGQGQQGHYPASLQQPGQGQ-----PGQRQQPGQGQ 476
Query: 366 HPRQGQRP 389
HP QG++P
Sbjct: 477 HPEQGKQP 484
>sp|P10387|GLT0_WHEAT GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT DY10 PRECURSOR
pir||S04832 glutenin high molecular weight chain (Dy10) - wheat
emb|CAA31396.1| (X12929) HMW glutenin subunit 10 [Triticum aestivum]
Length = 648
Score = 30.0 bits (66), Expect = 8.1
Identities = 20/63 (31%), Positives = 33/63 (51%), Gaps = 5/63 (7%)
Frame = +3
Query: 201 MSAPLSKELREQGERPLYPHP-----KGRRGHHCPWFQQGP*GQDHLRVPSQVRCPCRAC 365
+ P + + QG++ YP +G++GH+ QQ GQ P Q + P +
Sbjct: 422 LQQPGQGQQQGQGQQGYYPTSLQQPGQGQQGHYPASLQQPGQGQ-----PGQRQQPGQGQ 476
Query: 366 HPRQGQRP 389
HP QG++P
Sbjct: 477 HPEQGKQP 484
>pir||F75481 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF10329.1|AE001930_10 (AE001930) hypothetical protein [Deinococcus radiodurans]
Length = 184
Score = 30.0 bits (66), Expect = 8.1
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 231 EQGERPLYPHPKGRRGHHCPWFQQGP*GQD-HLRV-PSQVRCPCRACHPRQGQRPVRSP 401
EQG+RPL P+ H + GP G+ HL V P Q R RQ QRP P
Sbjct: 63 EQGQRPLAAQPQRHGDDHLVKLRVGPQGEPRHLEVRPHQFGHEVR----RQPQRPAHRP 117
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,544,745
Number of Sequences: 705144
Number of extensions: 4198689
Number of successful extensions: 184683607518
Number of sequences better than 10.0: 268722020
Number of HSP's better than 10.0 without gapping: 12817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13769
length of database: 222,175,239
effective HSP length: 109
effective length of database: 145,314,543
effective search space used: 7992299865
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)