Score E
Sequences producing significant alignments: (bits) Value
gb|AAD10497.1| (U91983) phosphatidylserine synthase [Tritic... 171 2e-42
ref|NP_010943.1| phosphatidylserine synthase; Cho1p [Saccha... 125 2e-28
dbj|BAA00121.1| (D00171) phosphatidylserine synthase [Sacch... 120 5e-27
pir||T40977 cdp-diacylglycerol--serine o-phosphatidyltransf... 113 5e-25
pir||E81315 CDPdiacylglycerol--serine O-phosphatidyltransfe... 39 0.021
emb|CAC12985.1| (AJ250327) glucose-1-phosphate thymidyltran... 37 0.079
pir||A69004 CDPdiacylglycerol--serine O-phosphatidyltransfe... 34 0.51
dbj|BAA78740.1| (AB023482) Hypothetical protein [Oryza sativa] 33 0.87
pir||F71678 CDPdiacylglycerol--serine O-phosphatidyltransfe... 32 1.5
sp|P48763|NAH2_RAT SODIUM/HYDROGEN EXCHANGER 2 (NA(+)/H(+) ... 32 2.5
sp|Q24767|PER_DROYA PERIOD CIRCADIAN PROTEIN >gi|103534|pir... 32 2.5
pir||T35671 probable transmembrane transport protein - Stre... 31 4.3
dbj|BAB40035.1| (AP003046) hypothetical protein [Oryza sativa] 30 5.6
gb|AAK65785.1| (AE007298) hypothetical protein [Sinorhizobi... 30 5.6
pir||T47268 phosphatidylserine synthase [imported] - Helico... 30 7.4
pir||T16697 hypothetical protein R07E4.5 - Caenorhabditis e... 30 7.4
gb|AAK39331.1| (AC024805) Hypothetical protein Y51H7C.13 [C... 30 7.4
gb|AAC47720.1| (U77951) amastigote surface protein-2 [Trypa... 30 7.4
ref|NP_005747.1| G protein-coupled receptor 64; G protein-c... 30 7.4
emb|CAC36925.1| (AL590605) putative membrane transporter [S... 30 9.6
gb|AAK51573.1|AC022352_9 (AC022352) Hypothetical protein [O... 30 9.6
gb|AAD09324.1| (AF015682) polymerase [rice ragged stunt virus] 30 9.6
>gb|AAD10497.1| (U91983) phosphatidylserine synthase [Triticum aestivum]
Length = 239
Score = 171 bits (434), Expect = 2e-42
Identities = 85/106 (80%), Positives = 90/106 (84%)
Frame = +3
Query: 6 RPLADTAGLTFFVLCGLTRLARFNVTVAVLPKDETGKSKYFEGTPIPTSLGMDAVMAYWL 185
R ADT GLTFFVLCGLTRLARFNVTVAVLPKD TGKSKYFEGTPIPTSL +D VMAYW+
Sbjct: 134 RTFADTVGLTFFVLCGLTRLARFNVTVAVLPKDATGKSKYFEGTPIPTSLVLDGVMAYWV 193
Query: 186 SQRGGHDNLPFGVWFQGSALEFHPAVLLFMIHGCLMTSKTIRIPKP 323
DN+PFGV +G+ LE HPAVLLFMIHGCLMTSKTIRIPKP
Sbjct: 194 YNGLILDNVPFGVLAEGTMLEVHPAVLLFMIHGCLMTSKTIRIPKP 239
>ref|NP_010943.1| phosphatidylserine synthase; Cho1p [Saccharomyces cerevisiae]
sp|P08456|PSS_YEAST CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
(PHOSPHATIDYLSERINE SYNTHASE)
pir||S00080 CDPdiacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)
CHO1 - yeast (Saccharomyces cerevisiae)
emb|CAA29376.1| (X05944) phosphatidylserine synthetase (AA 1-276) [Saccharomyces
cerevisiae]
gb|AAB64559.1| (U18778) Cho1p: phosphatidylserine synthetase [Saccharomyces
cerevisiae]
prf||1313296A phosphatidylserine synthase [Saccharomyces cerevisiae]
Length = 276
Score = 125 bits (313), Expect = 2e-28
Identities = 62/102 (60%), Positives = 77/102 (74%), Gaps = 1/102 (0%)
Frame = +3
Query: 18 DTAGLTFFVLCGLTRLARFNVTVAVLPKDE-TGKSKYFEGTPIPTSLGMDAVMAYWLSQR 194
D L+FFVLCGL RLARFNVTVA LPKD TGKSKYFEG P+PT+L + MAY + +
Sbjct: 174 DVMILSFFVLCGLARLARFNVTVAQLPKDSSTGKSKYFEGLPMPTTLALVLGMAYCVRKG 233
Query: 195 GGHDNLPFGVWFQGSALEFHPAVLLFMIHGCLMTSKTIRIPKP 323
DN+PFG++ + LEFHP +L+F IHGC M SK+++IPKP
Sbjct: 234 LIFDNIPFGIFREDQILEFHPIILVFFIHGCGMISKSLKIPKP 276
>dbj|BAA00121.1| (D00171) phosphatidylserine synthase [Saccharomyces cerevisiae]
Length = 276
Score = 120 bits (300), Expect = 5e-27
Identities = 60/101 (59%), Positives = 75/101 (73%), Gaps = 1/101 (0%)
Frame = +3
Query: 18 DTAGLTFFVLCGLTRLARFNVTVAVLPKDE-TGKSKYFEGTPIPTSLGMDAVMAYWLSQR 194
D L+FFVLCGL RLA FNVTVA LPKD TGKSKYFEG P+PT+L + MAY + +
Sbjct: 174 DVMILSFFVLCGLARLATFNVTVAQLPKDSSTGKSKYFEGLPMPTTLALVLGMAYCVRKG 233
Query: 195 GGHDNLPFGVWFQGSALEFHPAVLLFMIHGCLMTSKTIRIPK 320
DN+PFG++ + LEFHP +L+F IHGC M SK+++IPK
Sbjct: 234 LIFDNIPFGIFREDQILEFHPIILVFFIHGCGMISKSLKIPK 275
>pir||T40977 cdp-diacylglycerol--serine o-phosphatidyltransfe rase - fission
yeast (Schizosaccharomyces pombe)
emb|CAA21446.1| (AL031966) cdp-diacylglycerol--serine o-phosphatidyltransfe rase
[Schizosaccharomyces pombe]
Length = 250
Score = 113 bits (283), Expect = 5e-25
Identities = 53/101 (52%), Positives = 72/101 (70%)
Frame = +3
Query: 18 DTAGLTFFVLCGLTRLARFNVTVAVLPKDETGKSKYFEGTPIPTSLGMDAVMAYWLSQRG 197
DT L+ FVLCGLTRLARFNV+V +PKD +GKS++FEGTPIPT+L + V + +
Sbjct: 139 DTVILSLFVLCGLTRLARFNVSVNSIPKDGSGKSQFFEGTPIPTTLSLVTVCGVCILKGK 198
Query: 198 GHDNLPFGVWFQGSALEFHPAVLLFMIHGCLMTSKTIRIPK 320
H+NLP+G W + FHP V+LF++ G MTSK +++PK
Sbjct: 199 THENLPWGEWCGNTPFAFHPLVVLFVLSGIAMTSKKLKVPK 239
>pir||E81315 CDPdiacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)
Cj1114c [similarity] - Campylobacter jejuni (strain NCTC
11168)
emb|CAB73369.1| (AL139077) CDP-diacylglycerol--serine O-phosphatidyltransferase
[Campylobacter jejuni]
Length = 242
Score = 38.5 bits (88), Expect = 0.021
Identities = 37/94 (39%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +3
Query: 36 FFVLCGLTRLARFNVTVAVLPKDETGKSKYFEGTPIPTSLGMDAVMAYWLSQRGGHDNL- 212
FFV+ G RLARFNVT T + F G PIPT+ V A W +D L
Sbjct: 104 FFVVFGAIRLARFNVTTG------TYEPSVFIGLPIPTAA---VVSAIWTYAFISYDFLK 154
Query: 213 PFGVWFQGSALEFHPAVLLFMIHGCLMTSKTIRIP 317
P+GV F ++L I G LM S IR P
Sbjct: 155 PYGVVF----------LVLQAILGLLMVS-NIRYP 178
>emb|CAC12985.1| (AJ250327) glucose-1-phosphate thymidyltransferase
[Gluconacetobacter xylinus]
Length = 306
Score = 36.6 bits (83), Expect = 0.079
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -3
Query: 263 DGRVKLESRALEPDTEGEVVVAPALREPVGHDGIHTERSGDGCS 132
DGRV+ +R+L+P + GE+ + R + D +H +R G GC+
Sbjct: 186 DGRVREYARSLKPSSRGELEITDLNRIYLQKDDLHVQRLGRGCA 229
>pir||A69004 CDPdiacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)
[similarity] - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB85523.1| (AE000875) CDP-diacylglycerol-serine O-phosphatidyltransferase
[Methanothermobacter thermautotrophicus]
Length = 233
Score = 33.9 bits (76), Expect = 0.51
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +3
Query: 42 VLCGLTRLARFNVTVAVLPKDETGKSKYFEGTPIPTS 152
VLCG+ RL+RFNV TG K F G PIP +
Sbjct: 109 VLCGILRLSRFNVL--------TGGGKNFTGLPIPVA 137
>dbj|BAA78740.1| (AB023482) Hypothetical protein [Oryza sativa]
Length = 126
Score = 33.1 bits (74), Expect = 0.87
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = -2
Query: 288 GNRES*TGGRQGETREQSPGTRHRRGGCRGPRAER 184
GNR S G R T + +P HR GCRGPR +R
Sbjct: 45 GNRRSARGQRTHFTADTAP--THRHDGCRGPRGKR 77
>pir||F71678 CDPdiacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)
RP242 [similarity] - Rickettsia prowazekii
emb|CAA14704.1| (AJ235271) CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE
(pssA) [Rickettsia prowazekii]
Length = 224
Score = 32.3 bits (72), Expect = 1.5
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 21 TAGLTFFVLCGLTRLARFNVTVAVLPKDETGKSKYFEGTPIP 146
+A + F++C RLARFNV + L +D+ + +F G P P
Sbjct: 78 SAVMLLFIVCMALRLARFNVGIYQLKQDKKTED-FFTGVPAP 118
>sp|P48763|NAH2_RAT SODIUM/HYDROGEN EXCHANGER 2 (NA(+)/H(+) EXCHANGER 2) (NHE-2) (H7)
pir||A46748 Na+/H+-exchanging protein NHE-2 - rat
gb|AAA72350.1| (L11236) [Rattus rattus mRNA sequence.], gene product
Length = 813
Score = 31.6 bits (70), Expect = 2.5
Identities = 23/61 (37%), Positives = 25/61 (40%)
Frame = +2
Query: 182 ALSARGPRQPPLRCLVPGLCSRVSPCRPPVHDSRLPHDQQDYPHSQALEGLLKRPFNIV* 361
A ARG P P S V+P P +SRLP DYPH Q PF I
Sbjct: 40 APGARGASSNP-----PSPASVVAPGTTPFEESRLPVFTLDYPHVQI-------PFEITL 87
Query: 362 W 364
W
Sbjct: 88 W 88
>sp|Q24767|PER_DROYA PERIOD CIRCADIAN PROTEIN
pir||S17286 period clock protein - fruit fly (Drosophila yakuba)
emb|CAA43439.1| (X61127) period [Drosophila yakuba]
Length = 1208
Score = 31.6 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 149 SGDGCSLKVLALASLILGQDGDSDVETSKASEAAQNEEGKTSG 21
SG GC ++ + L+ Q D KA+E Q EEG SG
Sbjct: 110 SGSGCGVEQQSCRELLQDQQHGEDHSEPKATEQLQQEEGDRSG 152
>pir||T35671 probable transmembrane transport protein - Streptomyces coelicolor
emb|CAA15783.1| (AL009199) probable transmembrane transport protein [Streptomyces
coelicolor A3(2)]
Length = 353
Score = 30.8 bits (68), Expect = 4.3
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = -2
Query: 270 TGGRQGETREQSPGTRHRRGGCRG 199
TGG +GE++ ++PG+R RR +G
Sbjct: 327 TGGGEGESKRKAPGSRARRAAAKG 350
>dbj|BAB40035.1| (AP003046) hypothetical protein [Oryza sativa]
Length = 386
Score = 30.4 bits (67), Expect = 5.6
Identities = 29/96 (30%), Positives = 36/96 (37%)
Frame = -3
Query: 317 GNADSLAGHEATVNHEQEDGRVKLESRALEPDTEGEVVVAPALREPVGHDGIHTERSGDG 138
GN D G R + S L+ DT E AL G G HT G+G
Sbjct: 185 GNGDGATGGRFGRARASTRLRESVSSVRLDGDTTREAGDVWALPSTGGDGGEHTASGGNG 244
Query: 137 CSLKVLALASLILGQDGDSDVETSKASEAAQNEEGK 30
S LAL GQ+GD E E + +G+
Sbjct: 245 RSKSKLALGG--HGQNGDR--EDDAGGEKKEERKGE 276
>gb|AAK65785.1| (AE007298) hypothetical protein [Sinorhizobium meliloti]
Length = 347
Score = 30.4 bits (67), Expect = 5.6
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +2
Query: 107 DWQEQVL*GNTHPHFARYGCRHGLLALSARGPRQPP-------LRCLVPGLCSRVSPCRP 265
+W E + P + YG R+ ALS++ P LRC+V G SRVSP +P
Sbjct: 286 EWVESGGPSVSEPSRSGYGTRYIRSALSSQFGTPPVILFHPQGLRCIVSGPLSRVSPRQP 345
Query: 266 PV 271
V
Sbjct: 346 EV 347
>pir||T47268 phosphatidylserine synthase [imported] - Helicobacter felis
emb|CAA05103.1| (AJ001932) hypothetical protein [Helicobacter felis]
Length = 214
Score = 30.0 bits (66), Expect = 7.4
Identities = 18/43 (41%), Positives = 22/43 (50%)
Frame = +3
Query: 24 AGLTFFVLCGLTRLARFNVTVAVLPKDETGKSKYFEGTPIPTS 152
A FV+ G RLARFNVT +T F G PIP++
Sbjct: 76 AACALFVIFGAIRLARFNVTT------QTTDPYSFIGIPIPSA 112
>pir||T16697 hypothetical protein R07E4.5 - Caenorhabditis elegans
gb|AAA80404.1| (U39652) short region of weak similarity to calpain inhibitor
precursor (calpastatin) (SP:P08855) [Caenorhabditis
elegans]
Length = 817
Score = 30.0 bits (66), Expect = 7.4
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = -3
Query: 218 EGEVVVAPALREPVGHDGIHTERSGDGCSLKVLALASLILGQD---GD--SDVETSKASE 54
EG+ P E V ++ + + G L+ L ++ G+D GD S+V+ K +E
Sbjct: 318 EGDGESGPITAENVKNEKTNLTKGGRKRRLQTLEPSNAKKGKDAKNGDLLSEVKNDKEAE 377
Query: 53 AAQNEEGKTSGIG 15
+NE+GK S G
Sbjct: 378 TKENEDGKASADG 390
>gb|AAK39331.1| (AC024805) Hypothetical protein Y51H7C.13 [Caenorhabditis elegans]
Length = 393
Score = 30.0 bits (66), Expect = 7.4
Identities = 14/27 (51%), Positives = 16/27 (58%)
Frame = -1
Query: 469 PLQPKPNTPPK*QSTSPYQSHISGTPP 389
P P NTPP + T PY S+ GTPP
Sbjct: 153 PYPPATNTPPAPEPTLPYDSY--GTPP 177
>gb|AAC47720.1| (U77951) amastigote surface protein-2 [Trypanosoma cruzi]
Length = 706
Score = 30.0 bits (66), Expect = 7.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 90 VLPKD--ETGKSKYFEGTPIPTSLGMDAVMAYWLSQRGGHDNLPFGV 224
VLPK+ E+G K F + ++ G+ A S+ H+N PFG+
Sbjct: 90 VLPKEGSESGVKKAFAAPSLVSAGGVMVAFAEGFSEYNAHENNPFGI 136
>ref|NP_005747.1| G protein-coupled receptor 64; G protein-coupled receptor,
epididymis-specific (seven transmembrane family) [Homo
sapiens]
emb|CAA57479.1| (X81892) seven transmembrane-domain receptor [Homo sapiens]
Length = 1014
Score = 30.0 bits (66), Expect = 7.4
Identities = 16/36 (44%), Positives = 29/36 (80%), Gaps = 12/36 (33%)
Frame = -1
Query: 469 PLQPKPNTP----------PK*QS-TSPY-QSHISGTPPKLECGYATP 362
PL P+P+ P P+ ++ +SP Q+H+SGTPP ++ +++P
Sbjct: 298 PLSPQPSAPIASSPAIDMPPQSETISSPMPQTHVSGTPPPVKASFSSP 345
>emb|CAC36925.1| (AL590605) putative membrane transporter [Schizosaccharomyces
pombe]
Length = 554
Score = 29.6 bits (65), Expect = 9.6
Identities = 16/49 (32%), Positives = 29/49 (58%)
Frame = -3
Query: 149 SGDGCSLKVLALASLILGQDGDSDVETSKASEAAQNEEGKTSGIGERTR 3
+G C+L V L ++ + +SD++ SK+S+A +G T+ I E+ R
Sbjct: 300 NGKTCTLTVEELYAIDRQEQEESDLDDSKSSDAKSVTQGTTNLIVEKLR 348
>gb|AAK51573.1|AC022352_9 (AC022352) Hypothetical protein [Oryza sativa]
Length = 234
Score = 29.6 bits (65), Expect = 9.6
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = -3
Query: 281 VNHEQEDGRVKLESRALEPDTEGE-----VVVAPALREPVGHDGIHTERSGDGCSLKVLA 117
V + +DG + R+ D G+ + VAP+ E DG TE GDG
Sbjct: 74 VRDDDDDGAPAVGERSEGADGVGDNAAKPMEVAPSREEDRSDDGGETELGGDGGERG--- 130
Query: 116 LASLILGQDGDSDVETSKASEAAQNEEGKTSG 21
A L DG+S+ ++ E + ++ SG
Sbjct: 131 -ARRELDSDGESERRAAETEERSTGDDFIASG 161
>gb|AAD09324.1| (AF015682) polymerase [rice ragged stunt virus]
Length = 1357
Score = 29.6 bits (65), Expect = 9.6
Identities = 25/76 (32%), Positives = 31/76 (39%), Gaps = 6/76 (7%)
Frame = +2
Query: 14 RRYRWSYLLRSVRPHSPCSFQRHCRRLAQG*DWQEQVL*GNTHPHFARYGCRHGLLALS- 190
RR ++ R R PC+ + R + GNT H A G H L LS
Sbjct: 269 RRVEFTRCFRQWREIFPCTLRTGIRFV------------GNTPHHHAWVGFCHALSPLSS 316
Query: 191 -----ARGPRQPPLRCLVPGLC 241
A PR PLRC + C
Sbjct: 317 PVNALAEFPRSLPLRCKILSAC 338
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,149,494
Number of Sequences: 705144
Number of extensions: 5152421
Number of successful extensions: 16397
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 15381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16373
length of database: 222,175,239
effective HSP length: 109
effective length of database: 145,314,543
effective search space used: 7265727150
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)