Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB55181.1| (AK027532) unnamed protein product [Homo sa... 110 7e-24
ref|NP_060555.1| hypothetical protein FLJ10402 [Homo sapien... 110 7e-24
ref|NP_011273.1| Kap114p [Saccharomyces cerevisiae] >gi|172... 107 7e-23
sp|Q10297|YD43_SCHPO HYPOTHETICAL 111.1 KDA PROTEIN C22H10.... 94 9e-19
gb|AAF28951.1|AF161391_1 (AF161391) HSPC273 [Homo sapiens] 84 5e-16
dbj|BAA86506.1| (AB033018) KIAA1192 protein [Homo sapiens] 76 2e-13
gb|AAF54632.1| (AE003691) Ranbp9 gene product [Drosophila m... 66 1e-10
dbj|BAB19329.1| (AP003044) hypothetical protein [Oryza sativa] 46 2e-04
gb|AAG50680.1|AC079829_13 (AC079829) hypothetical protein [... 42 0.004
gb|AAF27911.1|AF214480_1 (AF214480) mutanase [Cloning vecto... 35 0.47
gb|AAF73910.1| (AF227255) polyprotein [bovine viral diarrhe... 34 0.62
pir||S24345 Balbiani ring 1 protein - midge (Chironomus ten... 34 0.62
pir||T51622 probable aldehyde oxidase (EC 1.2.3.1) [importe... 34 0.80
gb|AAK52566.1|AC079853_19 (AC079853) Unknown protein [Oryza... 33 1.0
ref|NP_074060.1| nucleolar phosphoprotein p130; nucleolar p... 33 1.4
pir||T34347 hypothetical protein T12A2.3 - Caenorhabditis e... 33 1.4
gb|AAA41719.1| (M94288) Nopp140 [Rattus norvegicus] 33 1.8
pir||T21379 hypothetical protein Y2H9A.4 - Caenorhabditis e... 33 1.8
pir||B42680 nucleolus-cytoplasm shuttle phosphoprotein - rat 33 1.8
dbj|BAB13498.1| (AB028634) RNA polymerase [Flammulina velut... 32 2.3
pir||E72509 probable non specific lipid-transfer protein AP... 32 3.1
ref|NP_076472.1| RhoGEF glutamate transport modulator GTRAP... 32 3.1
pir||T19168 hypothetical protein F45E10.1 - Caenorhabditis ... 32 4.0
pir||T29582 hypothetical protein M03A1.6 - Caenorhabditis e... 31 5.2
pir||T48079 hypothetical protein F26K9.330 - Arabidopsis th... 31 5.2
pir||T30293 ABC transport protein homolog - Salmonella typh... 31 5.2
pir||T26812 hypothetical protein Y41E3.2 - Caenorhabditis e... 31 5.2
pir||G83310 conserved hypothetical protein PA2685 [imported... 31 6.8
ref|NP_014870.1| Yor227wp [Saccharomyces cerevisiae] >gi|21... 31 6.8
emb|CAC40672.1| (AJ314770) high molecular weight glutenin s... 31 6.8
pir||T34946 probable isoleucyl-tRNA synthetase - Streptomyc... 30 8.9
>dbj|BAB55181.1| (AK027532) unnamed protein product [Homo sapiens]
Length = 674
Score = 110 bits (275), Expect = 7e-24
Identities = 65/183 (35%), Positives = 112/183 (60%), Gaps = 5/183 (2%)
Frame = +2
Query: 20 RVGSWQDANGRSGLEVCLHIIDRLLGPSIEDNSASEVGGLAAELVEKAGQERLGPFLPQL 199
+V W D G +GL + ++ +LL P + +A+ VG L + L+ KAG+E LG L Q+
Sbjct: 360 QVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRE-LGENLDQI 418
Query: 200 LQAVANRLASAQAAAFIQSLILVFARLTLSGAHEVVDFLSQIQ-INGESGLQVVVAKWLE 376
L+A+ +++ A+ + +QSLI+VFA L + +++FL + G+ L+ V+A+W
Sbjct: 419 LRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTS 478
Query: 377 NSVNFAGYDEIRQNVIALSKL----YSLNDPRLAQTQVKGDLIVNXDDGLIKTRSRAKKN 544
F G E + + +AL KL + +D RL +VKG+ I + D+G I+TRS++ KN
Sbjct: 479 RQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEG-IRTRSKSAKN 537
Query: 545 PDQYTVVP 568
P+++T +P
Sbjct: 538 PERWTNIP 545
>ref|NP_060555.1| hypothetical protein FLJ10402 [Homo sapiens]
ref|XP_001913.1| hypothetical protein FLJ10402 [Homo sapiens]
dbj|BAA91588.1| (AK001264) unnamed protein product [Homo sapiens]
gb|AAH03604.1|AAH03604 (BC003604) hypothetical protein FLJ10402 [Homo sapiens]
Length = 441
Score = 110 bits (275), Expect = 7e-24
Identities = 65/183 (35%), Positives = 112/183 (60%), Gaps = 5/183 (2%)
Frame = +2
Query: 20 RVGSWQDANGRSGLEVCLHIIDRLLGPSIEDNSASEVGGLAAELVEKAGQERLGPFLPQL 199
+V W D G +GL + ++ +LL P + +A+ VG L + L+ KAG+E LG L Q+
Sbjct: 127 QVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRE-LGENLDQI 185
Query: 200 LQAVANRLASAQAAAFIQSLILVFARLTLSGAHEVVDFLSQIQ-INGESGLQVVVAKWLE 376
L+A+ +++ A+ + +QSLI+VFA L + +++FL + G+ L+ V+A+W
Sbjct: 186 LRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTS 245
Query: 377 NSVNFAGYDEIRQNVIALSKL----YSLNDPRLAQTQVKGDLIVNXDDGLIKTRSRAKKN 544
F G E + + +AL KL + +D RL +VKG+ I + D+G I+TRS++ KN
Sbjct: 246 RQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEG-IRTRSKSAKN 304
Query: 545 PDQYTVVP 568
P+++T +P
Sbjct: 305 PERWTNIP 312
>ref|NP_011273.1| Kap114p [Saccharomyces cerevisiae]
sp|P53067|YGZ1_YEAST HYPOTHETICAL 113.9 KDA PROTEIN IN TAD1-CSE1 INTERGENIC REGION
pir||S53939 probable membrane protein YGL241w - yeast (Saccharomyces cerevisiae)
emb|CAA89014.1| (Z49149) 16.8% identity in 1053 aa ov with the CSE1 protein from S.
cerevisiae [Saccharomyces cerevisiae]
emb|CAA96960.1| (Z72763) ORF YGL241w [Saccharomyces cerevisiae]
prf||2210407F HRC1004 gene [Saccharomyces cerevisiae]
Length = 1004
Score = 107 bits (266), Expect = 7e-23
Identities = 63/166 (37%), Positives = 95/166 (56%)
Frame = +2
Query: 71 LHIIDRLLGPSIEDNSASEVGGLAAELVEKAGQERLGPFLPQLLQAVANRLASAQAAAFI 250
+ +++RLL + D++A VG L + + +E + P + ++L+AV RL Q +
Sbjct: 715 MKVLERLLSLEVSDSAAMNVGPLVVAIFTRFSKE-IQPLIGRILEAVVVRLIKTQNISTE 773
Query: 251 QSLILVFARLTLSGAHEVVDFLSQIQINGESGLQVVVAKWLENSVNFAGYDEIRQNVIAL 430
Q+L+ V LT + + VDFLS QI+ L +V+ KW+E G I++N++AL
Sbjct: 774 QNLLSVLCFLTCNDPKQTVDFLSSFQIDNTDALTLVMRKWIEAFEVIRGEKRIKENIVAL 833
Query: 431 SKLYSLNDPRLAQTQVKGDLIVNXDDGLIKTRSRAKKNPDQYTVVP 568
S L+ LND RL + V G+LI D LI TRS AKK PD+Y VP
Sbjct: 834 SNLFFLNDKRLQKVVVNGNLIPYEGD-LIITRSMAKKMPDRYVQVP 878
>sp|Q10297|YD43_SCHPO HYPOTHETICAL 111.1 KDA PROTEIN C22H10.03C IN CHROMOSOME I
pir||T38205 RanBP7/importin-beta/Cse1p homolog - fission yeast
(Schizosaccharomyces pombe)
emb|CAA93604.1| (Z69730) putative ranbp7-importin-beta-cse1p superfamily protein
[Schizosaccharomyces pombe]
Length = 986
Score = 93.6 bits (231), Expect = 9e-19
Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 2/176 (1%)
Frame = +2
Query: 38 DANGRSGLEVCLHIIDRLLGPSIEDNSASEVGGLAAELVEKAGQERLGPFLPQLLQAVAN 217
+ +G SG + L I+ +LL +D++ VG + EL + A Q L +L +
Sbjct: 708 EISGSSGFQYILFILHQLLDKESDDSACFLVGPILLELADHASQM---VDLQSILLSCIK 764
Query: 218 RLASAQAAAFIQSLILVFARLTLSGAHEVVDFLSQIQIN--GESGLQVVVAKWLENSVNF 391
RLA A+ FIQS+I VFA+L + + ++ FL+ +N G + +V++ W +N V F
Sbjct: 765 RLAIAEQPRFIQSIIYVFAKLIVKDSLGMMHFLTSSLLNEQGLTAFEVLMTVWCDNFVYF 824
Query: 392 AGYDEIRQNVIALSKLYSLNDPRLAQTQVKGDLIVNXDDGLIKTRSRAKKNPDQYTVV 565
+ + I IA++K+YS + P L QVKG+LI + + I TRS++K +P++Y+ V
Sbjct: 825 SNFKNISIICIAMTKIYSFDSPLLDSVQVKGELISHSN--RIITRSQSKLHPEEYSYV 880
>gb|AAF28951.1|AF161391_1 (AF161391) HSPC273 [Homo sapiens]
Length = 228
Score = 84.3 bits (207), Expect = 5e-16
Identities = 52/140 (37%), Positives = 89/140 (63%), Gaps = 5/140 (3%)
Frame = +2
Query: 149 LVEKAGQERLGPFLPQLLQAVANRLASAQAAAFIQSLILVFARLTLSGAHEVVDFLSQIQ 328
L+ KAG+E LG L Q+L+A+ +++ A+ + +QSLI+VFA L + +++FL +
Sbjct: 4 LISKAGRE-LGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLP 62
Query: 329 -INGESGLQVVVAKWLENSVNFAGYDEIRQNVIALSKL----YSLNDPRLAQTQVKGDLI 493
G+ L+ V+A+W F G E + + +AL KL + +D RL +VKG+ I
Sbjct: 63 GPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEI 122
Query: 494 VNXDDGLIKTRSRAKKNPDQYTVVP 568
+ D+G I+TRS++ KNP+++T +P
Sbjct: 123 YSMDEG-IRTRSKSAKNPERWTNIP 146
>dbj|BAA86506.1| (AB033018) KIAA1192 protein [Homo sapiens]
Length = 262
Score = 75.9 bits (185), Expect = 2e-13
Identities = 45/127 (35%), Positives = 80/127 (62%), Gaps = 5/127 (3%)
Frame = +2
Query: 188 LPQLLQAVANRLASAQAAAFIQSLILVFARLTLSGAHEVVDFLSQIQ-INGESGLQVVVA 364
L Q+L+A+ +++ A+ + +QSLI+VFA L + +++FL + G+ L+ V+A
Sbjct: 3 LDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMA 62
Query: 365 KWLENSVNFAGYDEIRQNVIALSKL----YSLNDPRLAQTQVKGDLIVNXDDGLIKTRSR 532
+W F G E + + +AL KL + +D RL +VKG+ I + D+G I+TRS+
Sbjct: 63 EWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEG-IRTRSK 121
Query: 533 AKKNPDQYTVVP 568
+ KNP+++T +P
Sbjct: 122 SAKNPERWTNIP 133
>gb|AAF54632.1| (AE003691) Ranbp9 gene product [Drosophila melanogaster]
gb|AAF73427.1|AF245516_1 (AF245516) Ran binding protein 9 [Drosophila melanogaster]
Length = 1018
Score = 66.2 bits (160), Expect = 1e-10
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Frame = +2
Query: 89 LLGP-SIEDNSASEVGGLAAELVEKAGQERLGPFLPQLLQAVANRLASAQAAAFIQSLIL 265
LL P + E +A ++G L ++ K G LG + LL+AV +++ + + I +L+L
Sbjct: 740 LLNPMNSEMTAAGQIGRLVITIITKMGS-MLGQNVDMLLKAVISKMQNLECLKVIMNLVL 798
Query: 266 VFARLTLSGAHEVVDFLSQIQ-INGESGLQVVVAKWLENSVNFAGYDEIRQNVIALSKLY 442
+FA L L+ V++FLS + NGE +Q V+ WL +F G E + +AL KL+
Sbjct: 799 IFAHLFLTQMDAVLNFLSTVPGPNGEPAMQFVLTNWLSRQNSFFGNYERKVTTMALCKLF 858
Query: 443 ----SLNDPRLAQTQVKGDLIVNXDDGLIKTRSRAKKNPDQYTVVPA 571
+ D RL K +L+ + D +TRS A ++ +PA
Sbjct: 859 EYGVATQDNRLTTITFK-ELVDDPTDTRRRTRSVA-ATTQKWVTIPA 903
>dbj|BAB19329.1| (AP003044) hypothetical protein [Oryza sativa]
Length = 755
Score = 45.8 bits (107), Expect = 2e-04
Identities = 36/131 (27%), Positives = 63/131 (47%), Gaps = 4/131 (3%)
Frame = +2
Query: 32 WQDANGRSGLEVCLHIIDRLLGPSIEDNSASEVGGLAAELVEKAGQERLGPFLPQLLQAV 211
W GR+ L++ L RLL P +E + + VG +L+ L P P+L+ A+
Sbjct: 531 WGGGQGRT-LKMLLDAASRLLDPVLESSVSLFVGSYILQLIIHL-PSHLSPHFPELIAAI 588
Query: 212 ANRLASAQAAAFIQSLILVFARLTLSGAHEV---VDFLSQIQING-ESGLQVVVAKWLEN 379
R+ S+ SL+++ ARL A V ++ L I G + L ++++W +
Sbjct: 589 VRRMQSSSITGLKSSLVVIVARLVHLSAPNVDQFINLLLAIPAQGYNNSLAYIMSEWSQL 648
Query: 380 SVNFAGYDEIRQNVI 424
A EI++ V+
Sbjct: 649 QNTLA---EIQEQVV 660
>gb|AAG50680.1|AC079829_13 (AC079829) hypothetical protein [Arabidopsis thaliana]
Length = 931
Score = 41.6 bits (96), Expect = 0.004
Identities = 34/139 (24%), Positives = 67/139 (47%), Gaps = 8/139 (5%)
Frame = +2
Query: 152 VEKAGQERLGPFLPQLLQAVANRLASAQAAAFIQSLILVFARLTLSGAHEVVDFLSQIQI 331
+E +G G ++ QL+ + + +A +Q L+ ++ + ++ L I
Sbjct: 664 LEGSGSLFAGKYILQLILHLPSEMAP-----HVQDLVAALVHMSYPNVDQFINLLVSIPA 718
Query: 332 NG-ESGLQVVVAKWLENSVNF-------AGYDEIRQNVIALSKLYSLNDPRLAQTQVKGD 487
+G E+ V+ +W + + Y +I+ AL+ L S A+ V G
Sbjct: 719 DGHENSFTYVMTEWTKQQGKHLYPWEIQSAY-QIKVTTSALALLLSTRHSEFAKVNVPGS 777
Query: 488 LIVNXDDGLIKTRSRAKKNPDQYTVVP 568
I + +G I TRS+A+ P+Q+T++P
Sbjct: 778 PIQS--NGGITTRSKARSAPEQWTIIP 802
>gb|AAF27911.1|AF214480_1 (AF214480) mutanase [Cloning vector pMT1802]
Length = 634
Score = 34.7 bits (78), Expect = 0.47
Identities = 22/54 (40%), Positives = 27/54 (49%)
Frame = -3
Query: 183 GPRRSWPAFSTSSAAKPPTSEAELSSIEGPSSRSMMCRQTSRPERPLASCQEPT 22
GP S PA ST+ A+ PP S +SS P S +TS P P AS P+
Sbjct: 499 GPVSSLPASSTTRASSPPVSSTRVSS---PPVSSPPVSRTSSPPPPPASSTPPS 549
>gb|AAF73910.1| (AF227255) polyprotein [bovine viral diarrhea virus-1 strain
NCP821]
Length = 424
Score = 34.3 bits (77), Expect = 0.62
Identities = 42/141 (29%), Positives = 68/141 (47%), Gaps = 10/141 (7%)
Frame = +2
Query: 62 EVCLHIIDRLLGPSIEDNSASEVGGLAAELVEKAGQE-RLGPFLPQLLQAVANRLASAQA 238
E+ L +D+L+G +I D ++ GGL E V+ ++ + P + ++A A
Sbjct: 18 ELALGDVDKLMG-AITDYAS---GGL--EFVKSQAEKIKTAPAFKENVEA-----AKGYV 66
Query: 239 AAFIQSLIL---VFARLTLSGAHEVVDFLSQIQINGESGLQVVVAKWLENSVNFAG---Y 400
FI SLI + R L GAH + ++ E+ +V KWL F G
Sbjct: 67 QKFIDSLIENKDIIIRYGLWGAHTALYKSIAARLGHETAFSTLVIKWLA----FGGDSVS 122
Query: 401 DEIRQNVIALSKLYSLNDPRL---AQTQVKG 484
D +RQ + L Y +N P ++TQ +G
Sbjct: 123 DHVRQAAVDLVVYYVINKPAFPGDSETQQEG 153
>pir||S24345 Balbiani ring 1 protein - midge (Chironomus tentans) (fragment)
emb|CAA45607.1| (X64322) BR1 [Chironomus tentans]
Length = 511
Score = 34.3 bits (77), Expect = 0.62
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -3
Query: 189 RKGPRRSWPAFSTSSAAKPPTSEAELSSIEGPSSRSMMCRQTS---RPERPLASCQEPTR 19
+ GP+ S +S + P+ SS GP S R + +PERP S +P+R
Sbjct: 414 KSGPKSSKSGPRSSKSVPRPSKSGSKSSKSGPRSNKSGPRSSKSGPKPERPSKSRPKPSR 473
Query: 18 PRTRGS 1
P GS
Sbjct: 474 PEVCGS 479
>pir||T51622 probable aldehyde oxidase (EC 1.2.3.1) [imported] - Arabidopsis
thaliana
dbj|BAA28624.1| (AB005804) aldehyde oxidase [Arabidopsis thaliana]
Length = 1368
Score = 33.9 bits (76), Expect = 0.80
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Frame = -2
Query: 250 DEGRSLGRGKSVSNSLEKLGQERTKALLASLL-------NKFSGQTTNLGGGVVLNRRTQ 92
++G LG ++S ++E L +E+ ++LA + N+F T +GG +++ +R Q
Sbjct: 313 EKGVELGACVTISKAIEVLREEKNVSVLAKIATHMEKIANRFVRNTGTIGGNIMMAQRKQ 372
Query: 91 QSVDDVQANLETRATVGIL 35
D + +ATV I+
Sbjct: 373 FPSDLATILVAAQATVKIM 391
>gb|AAK52566.1|AC079853_19 (AC079853) Unknown protein [Oryza sativa]
Length = 552
Score = 33.5 bits (75), Expect = 1.0
Identities = 23/83 (27%), Positives = 42/83 (49%), Gaps = 2/83 (2%)
Frame = -2
Query: 286 KSETSKHKNEGLDEGRSLGRGKSVSNSLEKLGQERTKALLASLLNKFSGQTT--NLGGGV 113
K+ TS L +G + G GK+V ++ QER K +++ LNK + T +
Sbjct: 429 KAPTSTSALVKLSKGATGGPGKTVRTEKKETPQERLKRIMSKQLNKQIRKDTAAEIAKKR 488
Query: 112 VLNRRTQQSVDDVQANLETRATVGI 38
R+ Q+ + +V+ ++ A VG+
Sbjct: 489 EQERQRQEKLAEVEGDIIAEAVVGV 513
>ref|NP_074060.1| nucleolar phosphoprotein p130; nucleolar phosphoprotein 140 [Rattus
norvegicus]
sp|P41777|NP14_RAT NUCLEOLAR PHOSPHOPROTEIN P130 (NUCLEOLAR 130 KDA PROTEIN) (140 KDA
NUCLEOLAR PHOSPHOPROTEIN) (NOPP140)
pir||A42680 nucleolus-cytoplasm shuttle phosphoprotein (clone pTM17) - rat
gb|AAA41718.1| (M94287) Nopp140 [Rattus norvegicus]
Length = 704
Score = 33.1 bits (74), Expect = 1.4
Identities = 17/61 (27%), Positives = 29/61 (46%)
Frame = -3
Query: 189 RKGPRRSWPAFSTSSAAKPPTSEAELSSIEGPSSRSMMCRQTSRPERPLASCQEPTRPRT 10
+K P + + A +PP +AE S E SS QT +P+ + + PT+ +T
Sbjct: 144 KKKPVQQKAVKPQAKAVRPPPKKAESSESESDSSSEDEAPQTQKPKAAATAAKAPTKAQT 203
Query: 9 R 7
+
Sbjct: 204 K 204
>pir||T34347 hypothetical protein T12A2.3 - Caenorhabditis elegans
gb|AAC24443.1| (U13019) T12A2.3 gene product [Caenorhabditis elegans]
Length = 206
Score = 33.1 bits (74), Expect = 1.4
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 189 RKGPRRSWPAFSTS-SAAKPPTSEAELSSIEGPSSRSMMCRQTSRPERPLASCQEPTRPR 13
R P+RS STS SA+ +S +ELS S R++ + TS+P+R +A +P
Sbjct: 79 RVAPKRSRSPGSTSPSASNSSSSSSELSFDMFSSKRTVPMKVTSKPKRVIAQASRTMKPH 138
Query: 12 TRGS 1
+ S
Sbjct: 139 QQES 142
>gb|AAA41719.1| (M94288) Nopp140 [Rattus norvegicus]
Length = 703
Score = 32.7 bits (73), Expect = 1.8
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = -3
Query: 150 SSAAKPPTSEAELSSIEGPSSRSMMCRQTSRPERPLASCQEPTRPRTR 7
+ A +PP +AE S E SS QT +P+ + + PT+ +T+
Sbjct: 156 AKAVRPPPKKAESSESESDSSSEDEAPQTQKPKAAATAAKAPTKAQTK 203
>pir||T21379 hypothetical protein Y2H9A.4 - Caenorhabditis elegans
emb|CAA16278.1| (AL021448) predicted using Genefinder [Caenorhabditis elegans]
emb|CAB02996.1| (Z81069) predicted using Genefinder [Caenorhabditis elegans]
Length = 699
Score = 32.7 bits (73), Expect = 1.8
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Frame = -2
Query: 298 VGSGKSETSKHKNEGLDEGRSLGRGKSVS-----NSLEKLGQERTKA-LLASLLNKFSGQ 137
+G KSET +++ +G+D+ L S +SLE+ Q+ K + A LL K+S +
Sbjct: 373 IGEEKSETDENELKGVDQDNQLPNTSRFSLQNELDSLERTLQKNIKVDVGAQLLEKYSNE 432
Query: 136 TTNLGGGVVLNRRTQ 92
TN + + ++ +
Sbjct: 433 LTNFVANITIPKQKE 447
>pir||B42680 nucleolus-cytoplasm shuttle phosphoprotein - rat
Length = 734
Score = 32.7 bits (73), Expect = 1.8
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = -3
Query: 150 SSAAKPPTSEAELSSIEGPSSRSMMCRQTSRPERPLASCQEPTRPRTR 7
+ A +PP +AE S E SS QT +P+ + + PT+ +T+
Sbjct: 187 AKAVRPPPKKAESSESESDSSSEDEAPQTQKPKAAATAAKAPTKAQTK 234
>dbj|BAB13498.1| (AB028634) RNA polymerase [Flammulina velutipes]
Length = 1708
Score = 32.3 bits (72), Expect = 2.3
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 314 LSQIQINGE-SGLQVVVAKWLENSVNFAGYDEIRQNVIALSKLYSLND 454
++Q Q+ GE S + V KW N NF Y +I ++++ +KL LN+
Sbjct: 893 ITQNQLLGEFSNEMIKVIKWWLNKTNFEEYSDIEKDILNEAKLLLLNN 940
>pir||E72509 probable non specific lipid-transfer protein APE2051 - Aeropyrum
pernix (strain K1)
dbj|BAA81061.1| (AP000063) 116aa long hypothetical non specific lipid-transfer
protein [Aeropyrum pernix]
Length = 116
Score = 32.0 bits (71), Expect = 3.1
Identities = 22/47 (46%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Frame = -3
Query: 183 GP-RRSWPA--FSTSSAAKPPTSEAELSSIEGPSSRSMMCRQTSRPERPL 43
GP R +WPA FST PPT SS SS S++ Q SR PL
Sbjct: 9 GPIRTAWPAPLFSTKKLGPPPTRLFLFSSSSSLSSASLLLAQRSRFSVPL 58
>ref|NP_076472.1| RhoGEF glutamate transport modulator GTRAP48 [Rattus norvegicus]
gb|AAG28597.1|AF225961_1 (AF225961) RhoGEF glutamate transport modulator GTRAP48 [Rattus
norvegicus]
Length = 1527
Score = 32.0 bits (71), Expect = 3.1
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = -3
Query: 126 SEAELSSIEGPSSRSMMCRQTSRPERPLASCQEPT 22
SE+ELS +EG + + C S P PL S EPT
Sbjct: 1355 SESELSEVEGGAQATGNCFYVSMPAGPLDSSTEPT 1389
>pir||T19168 hypothetical protein F45E10.1 - Caenorhabditis elegans
emb|CAA90442.1| (Z50109) cDNA EST yk25d6.3 comes from this gene~cDNA EST yk25d6.5
comes from this gene~cDNA EST yk442c6.3 comes from this
gene~cDNA EST yk442c6.5 comes from this gene~cDNA EST
yk398f6.3 comes from this gene~cDNA EST yk398f6.5 comes
from this gene~cDNA >
emb|CAA87784.1| (Z47810) cDNA EST yk25d6.3 comes from this gene~cDNA EST yk25d6.5
comes from this gene~cDNA EST yk442c6.3 comes from this
gene~cDNA EST yk442c6.5 comes from this gene~cDNA EST
yk398f6.3 comes from this gene~cDNA EST yk398f6.5 comes
from this gene~cDNA >
Length = 1469
Score = 31.6 bits (70), Expect = 4.0
Identities = 19/58 (32%), Positives = 31/58 (52%)
Frame = -3
Query: 180 PRRSWPAFSTSSAAKPPTSEAELSSIEGPSSRSMMCRQTSRPERPLASCQEPTRPRTR 7
P ++P STS P ++ +S IE S+ S + S RP + Q+P+RP+T+
Sbjct: 115 PNSNFPQMSTSRLQTP---QSRISKIESSSTYSSI----SNLNRPTSQLQKPSRPQTQ 165
>pir||T29582 hypothetical protein M03A1.6 - Caenorhabditis elegans
gb|AAA93436.1| (U49956) coded for by C. elegans cDNA yk134g12.5; coded for by C.
elegans cDNA yk71h7.5; coded for by C. elegans cDNA
yk133b2.5; coded for by C. elegans cDNA yk134g12.5;
coded for by C. elegans cDNA yk133b2.3; weak similarity
over a short region to dr>
Length = 765
Score = 31.2 bits (69), Expect = 5.2
Identities = 16/49 (32%), Positives = 25/49 (50%)
Frame = -3
Query: 186 KGPRRSWPAFSTSSAAKPPTSEAELSSIEGPSSRSMMCRQTSRPERPLA 40
K ++ W +F TSS K S A L S+ S+ ++ + + E PLA
Sbjct: 651 KAVKKGWFSFGTSSNPKKTQSTASLGSVNATSTENIEFAKEAAEELPLA 699
>pir||T48079 hypothetical protein F26K9.330 - Arabidopsis thaliana
emb|CAB83140.1| (AL162651) putative protein [Arabidopsis thaliana]
Length = 1401
Score = 31.2 bits (69), Expect = 5.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 322 LTQKVDHLVGSGKSETSKHKNEGLDEGRSLGRGKSVSNSLEK 197
L +K+DH++G GK + H+ + G+G S S S EK
Sbjct: 1003 LPRKLDHILGEGKQSSDHHRRSNDSLAKKSGKGSS-SRSKEK 1043
>pir||T30293 ABC transport protein homolog - Salmonella typhi
gb|AAB37256.1| (U62129) ATP binding cassette (ABC) transporter homolog [Salmonella
typhi]
Length = 1218
Score = 31.2 bits (69), Expect = 5.2
Identities = 23/59 (38%), Positives = 31/59 (51%)
Frame = -2
Query: 226 GKSVSNSLEKLGQERTKALLASLLNKFSGQTTNLGGGVVLNRRTQQSVDDVQANLETRA 50
G SV N LG T AS L +G T L +V+ +RTQ SV+ V A ++TR+
Sbjct: 270 GWSVMNGRIDLG---TFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFALIDTRS 325
>pir||T26812 hypothetical protein Y41E3.2 - Caenorhabditis elegans
emb|CAB08999.1| (Z95559) predicted using Genefinder~contains similarity to Pfam
domain: PF01391 (Collagen triple helix repeat (20
copies)), Score=78.7, E-value=4e-20, N=2; PF01484
(Nematode cuticle collagen N-terminal domain),
Score=62.5, E-value=2.9e-15, N=1~cDNA EST>
Length = 289
Score = 31.2 bits (69), Expect = 5.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 203 GEAGAGKDQGAPGQPSQQVQRPNHQPRRRSCPQ 105
G+ GA G PG+P QQ P P + CPQ
Sbjct: 108 GKPGAPGQPGTPGRPPQQPCEPTTPPPCQPCPQ 140
>pir||G83310 conserved hypothetical protein PA2685 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06073.1|AE004696_7 (AE004696) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 726
Score = 30.8 bits (68), Expect = 6.8
Identities = 25/76 (32%), Positives = 42/76 (54%), Gaps = 15/76 (19%)
Frame = -2
Query: 331 DLNLTQKVDHLVGSGKSETSKH---------KNEGLDEGRSL----GRGKSVS-NSLEKL 194
D+ + H VG +++T H + E +D ++ R K+V N ++
Sbjct: 545 DIEVENDESHWVGHDRTKTIDHDETVHVKHDRTETVDNNETITVHANRSKTVDRNETVRI 604
Query: 193 GQERTKALL-ASLLNKFSGQTTNLGGGVVLN 104
G +T+ +L ASL N G+ N+G G LN
Sbjct: 605 GMNKTETILMASLQNVGMGRMENVGLGYSLN 635
>ref|NP_014870.1| Yor227wp [Saccharomyces cerevisiae]
pir||S60954 probable membrane protein YOR227w - yeast (Saccharomyces
cerevisiae)
emb|CAA63190.1| (X92441) YOR50-17 [Saccharomyces cerevisiae]
emb|CAA99447.1| (Z75135) ORF YOR227w [Saccharomyces cerevisiae]
Length = 1246
Score = 30.8 bits (68), Expect = 6.8
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = -3
Query: 195 WGRKGPRRSWPAFSTSSAAKPPTSEAELSSIEG----PSSRSMMCRQTSRPERPLA 40
W KG RR+ T SAA TSEA +S++ PS+ ++ + + P+RPL+
Sbjct: 16 WLYKGKRRN----RTKSAASTRTSEATTTSVKKTATLPSTAAVPTKTIASPQRPLS 67
>emb|CAC40672.1| (AJ314770) high molecular weight glutenin subunit y [Secale
cereale]
Length = 737
Score = 30.8 bits (68), Expect = 6.8
Identities = 31/107 (28%), Positives = 47/107 (42%), Gaps = 2/107 (1%)
Frame = -1
Query: 464 PGEGR*GSRAWIEQSHFGGFHRIQQS*QSSLATWPRQPA--GHFRR*SEFDSKSRPPRGL 291
PG+G +Q+H+ QQ Q +P P G R+ S +P +G
Sbjct: 319 PGQG--------QQAHYPASQ--QQPGQGQQGHYPASPQQPGQGRQGHYPASLQQPGQG- 367
Query: 290 RKE*DEQTQE*GTG*RPQLGQRQVC*QQLGEAGAGKDQGAPGQPSQQVQ 144
+QT++ G G +P+ GQ+ QQ G+ G +P QP Q Q
Sbjct: 368 -----QQTEQPGQGQQPEQGQQPEQEQQPGQGQQGYYPTSPQQPGQGQQ 411
>pir||T34946 probable isoleucyl-tRNA synthetase - Streptomyces coelicolor
emb|CAB51985.1| (AL109663) putative isoleucyl-tRNA synthetase [Streptomyces
coelicolor A3(2)]
Length = 1047
Score = 30.4 bits (67), Expect = 8.9
Identities = 19/48 (39%), Positives = 25/48 (51%)
Frame = +2
Query: 116 SASEVGGLAAELVEKAGQERLGPFLPQLLQAVANRLASAQAAAFIQSL 259
S SEVGG + KA LG + +Q VA +A+A AAA +L
Sbjct: 863 SLSEVGGSLVDTTAKANFRALGKRFGKRVQDVAKAVAAADAAALSLAL 910
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,097,205
Number of Sequences: 705144
Number of extensions: 5213382
Number of successful extensions: 21403
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 18564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21311
length of database: 222,175,239
effective HSP length: 112
effective length of database: 143,199,111
effective search space used: 11455928880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)