The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1606_A10_A20ZS5.seq 1606_A10_A20ZS5 0 0 0 1 592
(559 letters)
Database: nr
705,144 sequences; 222,175,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||T40911 probable PHD-type zinc finger - fission yeast ... 33 1.7
gb|AAK51590.1|AC016528_1 (AC016528) L4123.9 [Leishmania maj... 32 2.8
sp|P29720|TMPB_TREPH TREPONEMAL MEMBRANE PROTEIN B PRECURSO... 31 6.3
gb|AAG51251.1|AC025781_3 (AC025781) unknown protein; 91989-... 31 6.3
gb|AAK59847.1| (AY037246) At1g69680/T6C23_12 [Arabidopsis t... 30 8.3
gb|AAG52542.1|AC013289_9 (AC013289) hypothetical protein; 6... 30 8.3
pir||A60519 carbonate dehydratase (EC 4.2.1.1) - tiger shar... 30 8.3
>pir||T40911 probable PHD-type zinc finger - fission yeast (Schizosaccharomyces
pombe)
emb|CAA22476.1| (AL034490) putative PHD-type zinc finger [Schizosaccharomyces
pombe]
Length = 571
Score = 32.7 bits (73), Expect = 1.7
Identities = 23/70 (32%), Positives = 34/70 (47%), Gaps = 1/70 (1%)
Frame = -2
Query: 222 SSTIHRPREKSPLTRRSPLSSKTAGSSPASA*NISSLFCSGLATCLPSTVIVK*SGRVD- 46
+ST H R+K P R P S+K++GSS N SS + L S + + R+D
Sbjct: 340 NSTSHDRRQKRPTRRHIPCSNKSSGSSTVLGNNSSSKSENSFLASLISNINQPSTSRIDT 399
Query: 45 MVMFDRGNEVK 13
M +E+K
Sbjct: 400 SFMLSLQHEIK 410
>gb|AAK51590.1|AC016528_1 (AC016528) L4123.9 [Leishmania major]
gb|AAK56478.1|AC012051_3 (AC012051) L4123.9 [Leishmania major]
Length = 1065
Score = 32.0 bits (71), Expect = 2.8
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = +2
Query: 20 SLPLSNITMSTLPDHFTITVDGKHVAKPEQKSEEMFQAEAGDEPAVFELKGDRLVSGDFS 199
S+ LS+ + ST P H +V K A P EE F +AG AV EL ++L+S
Sbjct: 925 SIELSSPSCST-PRHDNGSVSSKPAATPSPSQEEQFTRDAGTRRAVAEL--EQLLSDVAG 981
Query: 200 LGR 208
GR
Sbjct: 982 KGR 984
>sp|P29720|TMPB_TREPH TREPONEMAL MEMBRANE PROTEIN B PRECURSOR (ANTIGEN TMPB)
pir||B43592 outer membrane protein TmpB - Treponema phagedenis
gb|AAA27480.1| (M58563) outer membrane protein [Treponema phagedenis]
Length = 384
Score = 30.8 bits (68), Expect = 6.3
Identities = 17/61 (27%), Positives = 34/61 (54%), Gaps = 9/61 (14%)
Frame = +2
Query: 107 QKSEEMFQAEAGDEPAVFELKGDRLVSGDFSLGRW---------IVEDMSSHPKPIMWRK 259
+K+ E A E A++ KG++++ ++ + W I ++ + + P MWRK
Sbjct: 275 RKAAEEEAARKAAEEALYNEKGEKVLPSEYKVLTWKLDRECFWNIAKNPAVYNDPFMWRK 334
Query: 260 NEEESRDLRP 289
E ++D P
Sbjct: 335 LYEANKDKIP 344
>gb|AAG51251.1|AC025781_3 (AC025781) unknown protein; 91989-89867 [Arabidopsis thaliana]
Length = 409
Score = 30.8 bits (68), Expect = 6.3
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 125 FQAEAGDEPA--VFELKGDRLVSGDFSLGRWIVEDMSSHPKPIMWRKNEEESRDLRPVTV 298
F+A+ D + V KG GD + RWI P +W+ RD P +
Sbjct: 125 FEAKLKDRMSEQVGRWKGKWKEKGDEAKPRWI--------DPEVWKGMVSFWRD--PKSE 174
Query: 299 THSINGPEIRFHDSQGIAIH 358
SIN R+HD G+ IH
Sbjct: 175 RKSINSRNARYHDPDGLGIH 194
>gb|AAK59847.1| (AY037246) At1g69680/T6C23_12 [Arabidopsis thaliana]
Length = 202
Score = 30.4 bits (67), Expect = 8.3
Identities = 17/79 (21%), Positives = 34/79 (42%)
Frame = +2
Query: 116 EEMFQAEAGDEPAVFELKGDRLVSGDFSLGRWIVEDMSSHPKPIMWRKNEEESRDLRPVT 295
+E+F + DE +FEL + GD W + D++S E+++ + +
Sbjct: 37 QEVFVDPSRDESLIFELLDFKAEVGDIGSASWFLNDLAS----------EQDAEGFQLIE 86
Query: 296 VTHSINGPEIRFHDSQGIA 352
+ I P + F + +A
Sbjct: 87 QSEVIEAPGLSFRNISAVA 105
>gb|AAG52542.1|AC013289_9 (AC013289) hypothetical protein; 65754-64334 [Arabidopsis thaliana]
Length = 186
Score = 30.4 bits (67), Expect = 8.3
Identities = 17/79 (21%), Positives = 34/79 (42%)
Frame = +2
Query: 116 EEMFQAEAGDEPAVFELKGDRLVSGDFSLGRWIVEDMSSHPKPIMWRKNEEESRDLRPVT 295
+E+F + DE +FEL + GD W + D++S E+++ + +
Sbjct: 37 QEVFVDPSRDESLIFELLDFKAEVGDIGSASWFLNDLAS----------EQDAEGFQLIE 86
Query: 296 VTHSINGPEIRFHDSQGIA 352
+ I P + F + +A
Sbjct: 87 QSEVIEAPGLSFRNISAVA 105
>pir||A60519 carbonate dehydratase (EC 4.2.1.1) - tiger shark (fragments)
prf||1612265A carbonic anhydrase [Galeocerdo cuvier]
Length = 200
Score = 30.4 bits (67), Expect = 8.3
Identities = 17/52 (32%), Positives = 21/52 (39%)
Frame = -3
Query: 482 PIGNERSSA*TYKPLPILQQHGSLPTGSPLCSDP*LQRAFHREWQYLENHGT 327
PI E KPL + + TG PLC R FH W + HG+
Sbjct: 7 PINQEAKFDSNLKPLDLXYDPAYVLTGGPLCG-----RQFHFHWGASDTHGS 53
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,895,276
Number of Sequences: 705144
Number of extensions: 4869363
Number of successful extensions: 16430
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16418
length of database: 222,175,239
effective HSP length: 111
effective length of database: 143,904,255
effective search space used: 10648914870
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)