Score E
Sequences producing significant alignments: (bits) Value
pir||T40752 hypothetical protein SPBC8D2.07c - fission yeas... 38 0.028
emb|CAA17822.2| (AL022072) hypothetical protein [Schizosacc... 38 0.028
gb|AAH03224.1|AAH03224 (BC003224) Similar to chromosome con... 35 0.30
gb|AAG45422.1| (AF310676) E3 ubiquitin ligase SMURF2 [Homo ... 33 1.2
ref|NP_073576.1| E3 ubiquitin ligase SMURF2 [Homo sapiens] ... 33 1.2
ref|NP_001259.1| RCC1-like G exchanging factor RLG [Homo sa... 32 1.5
gb|AAB05842.1| (L41684) ORF [Rattus norvegicus] 32 1.5
ref|XP_007163.3| RCC1-like G exchanging factor RLG [Homo sa... 32 1.5
emb|CAB65271.1| (AJ250768) mouse fat 1 cadherin [Mus musculus] 32 1.5
dbj|BAB41197.1| (AB060000) hypothetical protein [Glycine max] 32 1.5
ref|NP_114007.1| FAT tumor suppressor (Drosophila) homolog ... 32 1.5
ref|NP_001720.1| betacellulin [Homo sapiens] >gi|461653|sp|... 32 2.0
pir||T31547 hypothetical protein Y47D3A.18 - Caenorhabditis... 32 2.6
ref|NP_005236.1| FAT tumor suppressor precursor; homolog of... 31 4.4
ref|XP_003477.3| FAT tumor suppressor precursor [Homo sapiens] 31 4.4
ref|NP_012305.1| Yps6p [Saccharomyces cerevisiae] >gi|73192... 30 7.5
gb|AAF01741.1|AF182399_1 (AF182399) J-binding protein [Tryp... 30 7.5
pir||G83158 probable transmembrane sensor PA3900 [imported]... 30 7.5
emb|CAA86998.1| (Z46902) putative aspartyl protease [Saccha... 30 7.5
ref|NP_116425.1| Y75 [Tupaia herpesvirus] >gi|14210757|gb|A... 30 7.5
dbj|BAA96913.1| (AB019228) gene_id:MCK7.9~pir||T34863~simil... 30 9.8
dbj|BAA24178.1| (AB000830) alpha-amylase precursor [Strepto... 30 9.8
dbj|BAA82494.1| (AB029618) hemagglutinin HA1 [Influenza B v... 30 9.8
dbj|BAA89280.1| (AB036447) hemagglutinin [Influenza B virus] 30 9.8
pir||T27752 hypothetical protein ZK1320.6 - Caenorhabditis ... 30 9.8
dbj|BAA82495.1| (AB029619) hemagglutinin HA1 [Influenza B v... 30 9.8
ref|NP_055296.1| apurinic/apyrimidinic endonuclease(APEX nu... 30 9.8
dbj|BAA78422.1| (AB021260) APEX nuclease-like 2 protein [Ho... 30 9.8
ref|XP_010218.2| apurinic/apyrimidinic endonuclease(APEX nu... 30 9.8
gb|AAD42313.1| (AF129893) hemagglutinin precursor [influenz... 30 9.8
gb|AAD29153.1|AF100355_1 (AF100355) hemagglutinin 1 subunit... 30 9.8
dbj|BAA86737.1| (AB027405) hemagglutinin precursor [Influen... 30 9.8
dbj|BAA89281.1| (AB036448) hemagglutinin [Influenza B virus] 30 9.8
gb|AAD29148.1|AF100350_1 (AF100350) hemagglutinin 1 subunit... 30 9.8
gb|AAD12162.1| (AF055922) tylosin resistance protein [Strep... 30 9.8
emb|CAB37345.2| (AJ009971) methyltransferase [Streptomyces ... 30 9.8
>pir||T40752 hypothetical protein SPBC8D2.07c - fission yeast
(Schizosaccharomyces pombe)
dbj|BAA21438.1| (AB004538) pi057 [Schizosaccharomyces pombe]
Length = 544
Score = 38.1 bits (87), Expect = 0.028
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Frame = +3
Query: 159 ELHDTPL-MEQFKDIA--------VRQNCVFCDAALRLEEDE-AKCENGHVFARCASTGL 308
EL + P+ ME +IA + C C+A ++ A C+NGHV+ RC+ T +
Sbjct: 436 ELAEVPIAMEVANEIAKSLEVSSDFSETCPACEATVQFNNTSLATCDNGHVWRRCSVT-M 494
Query: 309 AIMAPDISRICAVC 350
+++ ++ CAVC
Sbjct: 495 LLLSQKAAKYCAVC 508
>emb|CAA17822.2| (AL022072) hypothetical protein [Schizosaccharomyces pombe]
Length = 673
Score = 38.1 bits (87), Expect = 0.028
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Frame = +3
Query: 159 ELHDTPL-MEQFKDIA--------VRQNCVFCDAALRLEEDE-AKCENGHVFARCASTGL 308
EL + P+ ME +IA + C C+A ++ A C+NGHV+ RC+ T +
Sbjct: 565 ELAEVPIAMEVANEIAKSLEVSSDFSETCPACEATVQFNNTSLATCDNGHVWRRCSVT-M 623
Query: 309 AIMAPDISRICAVC 350
+++ ++ CAVC
Sbjct: 624 LLLSQKAAKYCAVC 637
>gb|AAH03224.1|AAH03224 (BC003224) Similar to chromosome condensation 1-like [Mus musculus]
Length = 551
Score = 34.7 bits (78), Expect = 0.30
Identities = 26/95 (27%), Positives = 43/95 (44%)
Frame = +3
Query: 57 APTRQLTTEGQVWEWMYGNGPDVFGATSTSKFSPELHDTPLMEQFKDIAVRQNCVFCDAA 236
A T LT EGQ++ W G + +G T S + + TP++ + KD + C +A
Sbjct: 267 AHTLVLTDEGQIYAW----GANSYGQLGTGNKSNQSYPTPVVVE-KDRII--EIAACHSA 319
Query: 237 LRLEEDEAKCENGHVFARCASTGLAIMAPDISRIC 341
AK + GHV+ G +++ P + C
Sbjct: 320 ---HTSAAKTQGGHVYMWGQCRGQSVILPHHTHFC 351
>gb|AAG45422.1| (AF310676) E3 ubiquitin ligase SMURF2 [Homo sapiens]
Length = 748
Score = 32.7 bits (73), Expect = 1.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 1 RPTRPHEEMKSAMRHLVQLHQQDN*QLKGKSGNGC-MGTGPMCLELLPRASSHQNYMTR 174
RPTRP E S R L +N + G +G C + P E R+ H+NYM+R
Sbjct: 187 RPTRPASEYSSPGRPL-SCFVDENTPISGTNGATCGQSSDPRLAERRVRSQRHRNYMSR 244
>ref|NP_073576.1| E3 ubiquitin ligase SMURF2 [Homo sapiens]
gb|AAG25641.1|AF301463_1 (AF301463) ubiquitin E3 ligase SMURF2 [Homo sapiens]
gb|AAG50421.1| (AY014180) E3 ubiquitin ligase Smurf2 [Homo sapiens]
Length = 748
Score = 32.7 bits (73), Expect = 1.2
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 1 RPTRPHEEMKSAMRHLVQLHQQDN*QLKGKSGNGC-MGTGPMCLELLPRASSHQNYMTR 174
RPTRP E S R L +N + G +G C + P E R+ H+NYM+R
Sbjct: 187 RPTRPASEYSSPGRPL-SCFVDENTPISGTNGATCGQSSDPRLAERRVRSQRHRNYMSR 244
>ref|NP_001259.1| RCC1-like G exchanging factor RLG [Homo sapiens]
pir||T50663 RCC1-like G exchanging factor RLG [imported] - human
gb|AAC79987.1| (AF060219) RCC1-like G exchanging factor RLG [Homo sapiens]
Length = 551
Score = 32.3 bits (72), Expect = 1.5
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +3
Query: 57 APTRQLTTEGQVWEWMYGNGPDVFGATSTSKFSPELHDTPLMEQFKDIAVRQNCVFCDAA 236
A T LT EGQV+ W G + +G T S + + TP+ + + + A
Sbjct: 267 AHTLVLTDEGQVYAW----GANSYGQLGTGNKSNQSYPTPVTVE------KDRIIEIAAC 316
Query: 237 LRLEEDEAKCENGHVFARCASTGLAIMAPDIS 332
AK + GHV+ G +++ P ++
Sbjct: 317 HSTHTSAAKTQGGHVYMWGQCRGQSVILPHLT 348
>gb|AAB05842.1| (L41684) ORF [Rattus norvegicus]
Length = 171
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 478 CV*ATNLPPHPPQTSPEDSILIPGPKFSIATRVNSVTLRHRSSHTAHILDISGAMMARPV 299
C A NLPP PP SP DS I P + + A ++D+ + +P+
Sbjct: 8 CSVAPNLPPPPPSNSPSDSDSIQKPSWDF-------------DYDAKVVDLDPCLSKKPL 54
Query: 298 E 296
E
Sbjct: 55 E 55
>ref|XP_007163.3| RCC1-like G exchanging factor RLG [Homo sapiens]
Length = 383
Score = 32.3 bits (72), Expect = 1.5
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +3
Query: 57 APTRQLTTEGQVWEWMYGNGPDVFGATSTSKFSPELHDTPLMEQFKDIAVRQNCVFCDAA 236
A T LT EGQV+ W G + +G T S + + TP+ + + + A
Sbjct: 267 AHTLVLTDEGQVYAW----GANSYGQLGTGNKSNQSYPTPVTVE------KDRIIEIAAC 316
Query: 237 LRLEEDEAKCENGHVFARCASTGLAIMAPDIS 332
AK + GHV+ G +++ P ++
Sbjct: 317 HSTHTSAAKTQGGHVYMWGQCRGQSVILPHLT 348
>emb|CAB65271.1| (AJ250768) mouse fat 1 cadherin [Mus musculus]
Length = 4587
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 478 CV*ATNLPPHPPQTSPEDSILIPGPKFSIATRVNSVTLRHRSSHTAHILDISGAMMARPV 299
C A NLPP PP SP DS I P + + A ++D+ + +P+
Sbjct: 4289 CSVAPNLPPPPPSNSPSDSDSIQKPSWDF-------------DYDAKVVDLDPCLSKKPL 4335
Query: 298 E 296
E
Sbjct: 4336 E 4336
>dbj|BAB41197.1| (AB060000) hypothetical protein [Glycine max]
Length = 620
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -1
Query: 460 LPPHPPQTSPEDSILIPGPKFSIATRVNSVTLRHRSSHTAHILDISGAMMA 308
LPP P SP S L P P ++A+ + V++ ++ A I+ S AM+A
Sbjct: 274 LPPAPSALSPSSSALSPAPSATLASEILPVSV----TNEAPIVSTSAAMLA 320
>ref|NP_114007.1| FAT tumor suppressor (Drosophila) homolog [Rattus norvegicus]
gb|AAD20459.1| (AF100960) protocadherin [Rattus norvegicus]
Length = 4589
Score = 32.3 bits (72), Expect = 1.5
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 478 CV*ATNLPPHPPQTSPEDSILIPGPKFSIATRVNSVTLRHRSSHTAHILDISGAMMARPV 299
C A NLPP PP SP DS I P + + A ++D+ + +P+
Sbjct: 4303 CSVAPNLPPPPPSNSPSDSDSIQKPSWDF-------------DYDAKVVDLDPCLSKKPL 4349
Query: 298 E 296
E
Sbjct: 4350 E 4350
>ref|NP_001720.1| betacellulin [Homo sapiens]
sp|P35070|BTC_HUMAN BETACELLULIN PRECURSOR (BTC)
pir||JC1467 betacellulin precursor - human
gb|AAB25452.1| (S55606) betacellulin, BTC [human, Peptide, 178 aa] [Homo sapiens]
Length = 178
Score = 32.0 bits (71), Expect = 2.0
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +3
Query: 117 PDVFGATSTSKFSPELHDTPLMEQFKDIAVRQNCVFCDAALRLEEDEAKCENGHVFARCA 296
P+ A +T++ + H + +Q+K ++ C F A + C+ G++ ARC
Sbjct: 49 PEENCAATTTQSKRKGHFSRCPKQYKHYCIKGRCRFVVAE---QTPSCVCDEGYIGARCE 105
Query: 297 STGLAIMAPDISRICAVCELRCLKV 371
L + D +I +C + + V
Sbjct: 106 RVDLFYLRGDRGQILVICLIAVMVV 130
>pir||T31547 hypothetical protein Y47D3A.18 - Caenorhabditis elegans
Length = 320
Score = 31.6 bits (70), Expect = 2.6
Identities = 20/59 (33%), Positives = 24/59 (39%)
Frame = +3
Query: 18 RRDEERDEASGTVAPTRQLTTEGQVWEWMYGNGPDVFGATSTSKFSPELHDTPLMEQFK 194
RRDEE+ E SG P RQ + Y + P S S SP PL + K
Sbjct: 54 RRDEEKAEKSGDKDPPRQFPSLLTSCSSFYSSSPSTSTYCSLSSLSPSSLPPPLQKSTK 112
>ref|NP_005236.1| FAT tumor suppressor precursor; homolog of Drosophila tumor
suppressor Fat precursor; cadherin-related tumor
suppressor homolog precursor; homolog of Drosophila Fat
protein precursor; homolog of Drosophila Fat protein;
cadherin family member 7 precurso>
sp|Q14517|FATH_HUMAN CADHERIN-RELATED TUMOR SUPPRESSOR HOMOLOG PRECURSOR (FAT PROTEIN
HOMOLOG)
emb|CAA60685.1| (X87241) homologue of Drosophila Fat protein [Homo sapiens]
Length = 4590
Score = 30.8 bits (68), Expect = 4.4
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = -1
Query: 478 CV*ATNLPPHPPQTSPEDSILIPGPKFSIATRVNSVTLRHRSSHTAHILDISGAMMARPV 299
C A NLPP PP SP DS I P + + ++D+ + +P+
Sbjct: 4304 CSVAPNLPPPPPSNSPSDSDSIQKPSWDF-------------DYDTKVVDLDPCLSKKPL 4350
Query: 298 E 296
E
Sbjct: 4351 E 4351
>ref|XP_003477.3| FAT tumor suppressor precursor [Homo sapiens]
Length = 4591
Score = 30.8 bits (68), Expect = 4.4
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = -1
Query: 478 CV*ATNLPPHPPQTSPEDSILIPGPKFSIATRVNSVTLRHRSSHTAHILDISGAMMARPV 299
C A NLPP PP SP DS I P + + ++D+ + +P+
Sbjct: 4305 CSVAPNLPPPPPSNSPSDSDSIQKPSWDF-------------DYDTKVVDLDPCLSKKPL 4351
Query: 298 E 296
E
Sbjct: 4352 E 4352
>ref|NP_012305.1| Yps6p [Saccharomyces cerevisiae]
sp|P40583|YIV9_YEAST PUTATIVE ASPARTYL PROTEINASE YIR039C PRECURSOR
pir||S50344 aspergillopepsin homolog YIR039c - yeast (Saccharomyces cerevisiae)
Length = 537
Score = 30.0 bits (66), Expect = 7.5
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Frame = +3
Query: 69 QLTTEGQVWEWMYG---NGPD------VFGATSTSKFSPELHDTPLMEQFKDIAVRQNCV 221
+L +G++ + Y NGPD +FGA SK++ +L+ P+++ F + +
Sbjct: 237 ELKNQGKINKIAYSLFLNGPDAHFGSILFGAVDKSKYTGQLYTLPMLQAFNTLGSNPGMI 296
Query: 222 FCDAALRLEEDEA 260
++ + + E+
Sbjct: 297 ITAQSVAILDSES 309
>gb|AAF01741.1|AF182399_1 (AF182399) J-binding protein [Trypanosoma brucei]
Length = 839
Score = 30.0 bits (66), Expect = 7.5
Identities = 10/19 (52%), Positives = 12/19 (62%)
Frame = -3
Query: 116 PVPIHPFPDLPFSCQLSCW 60
P P++P P PFSC S W
Sbjct: 331 PAPVYPVPLTPFSCAASAW 349
>pir||G83158 probable transmembrane sensor PA3900 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07287.1|AE004807_6 (AE004807) probable transmembrane sensor [Pseudomonas aeruginosa]
Length = 317
Score = 30.0 bits (66), Expect = 7.5
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +2
Query: 284 CPLRLNGSCHHGSRYIENMRRV*ATMPQSYRVDSRRYREFWAG 412
C R+ G GS +++ R+ AT+P V+ RR +W G
Sbjct: 270 CDPRIGGLRISGSYPLDDSERILATLPAVLPVEVRRVTRYWVG 312
>emb|CAA86998.1| (Z46902) putative aspartyl protease [Saccharomyces cerevisiae]
Length = 392
Score = 30.0 bits (66), Expect = 7.5
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Frame = +3
Query: 69 QLTTEGQVWEWMYG---NGPD------VFGATSTSKFSPELHDTPLMEQFKDIAVRQNCV 221
+L +G++ + Y NGPD +FGA SK++ +L+ P+++ F + +
Sbjct: 237 ELKNQGKINKIAYSLFLNGPDAHFGSILFGAVDKSKYTGQLYTLPMLQAFNTLGSNPGMI 296
Query: 222 FCDAALRLEEDEA 260
++ + + E+
Sbjct: 297 ITAQSVAILDSES 309
>ref|NP_116425.1| Y75 [Tupaia herpesvirus]
gb|AAK57120.1| (AF281817) Y75 [Tupaia herpesvirus]
Length = 730
Score = 30.0 bits (66), Expect = 7.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 162 LHDTPLMEQFKDIAVRQNCVFCDAALRLEEDEAK 263
+HD + K+I Q C FCD+AL +E DE K
Sbjct: 617 IHDPGTITVVKNITSTQRCEFCDSAL-VEYDEVK 649
>dbj|BAA96913.1| (AB019228) gene_id:MCK7.9~pir||T34863~similar to unknown protein
[Arabidopsis thaliana]
Length = 324
Score = 29.6 bits (65), Expect = 9.8
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 466 TNLPPHPPQTSPEDSILIPGPKFSIATRVNSVTLRHRSSHTAHILDISGAMMARPVE 296
T+ P T P+D + I G ++A + R R T H+LD+S A VE
Sbjct: 168 TDSSSSPVSTKPQDRLRIIGGHLNVAAEAKAPK-RSRPPITTHVLDVSRGAPAAGVE 223
>dbj|BAA24178.1| (AB000830) alpha-amylase precursor [Streptococcus bovis]
Length = 484
Score = 29.6 bits (65), Expect = 9.8
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 269 EWTCVCPLRLNGSCHHGSRYIENMRRV*ATMPQSYRVDSRRYREFWAGDK 418
E T VC RL+ H S ++ N R M + Y D + EFW GD+
Sbjct: 223 ETTGVCGFRLDAIKHIDSFFMSNFIR---DMKEKYGKDFYVFGEFWNGDE 269
>dbj|BAA82494.1| (AB029618) hemagglutinin HA1 [Influenza B virus (B/Osaka/1058/97)]
Length = 361
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 175 GVSCSSGENLLVEVAPNTSGPFPYIHSQT 89
GV+ S+ ++L EV P TSG FP +H +T
Sbjct: 72 GVTPSAKASILHEVRPVTSGCFPIMHDRT 100
>dbj|BAA89280.1| (AB036447) hemagglutinin [Influenza B virus]
Length = 331
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 175 GVSCSSGENLLVEVAPNTSGPFPYIHSQT 89
GV+ S+ ++L EV P TSG FP +H +T
Sbjct: 70 GVTPSAKASILHEVRPVTSGCFPIMHDRT 98
>pir||T27752 hypothetical protein ZK1320.6 - Caenorhabditis elegans
emb|CAA87044.1| (Z46934) contains similarity to Pfam domain: PF00025
(ADP-ribosylation factor family), Score=101.2,
E-value=6.6e-27, N=1~cDNA EST yk352b9.3 comes from this
gene~cDNA EST yk352b9.5 comes from this gene
[Caenorhabditis elegans]
Length = 557
Score = 29.6 bits (65), Expect = 9.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 230 CSAAFGGG*SQVREWTCVCPLRLNGSC 310
C AA G G Q+ + VC RLNG+C
Sbjct: 529 CDAATGSGIDQIIDQITVCLSRLNGTC 555
>dbj|BAA82495.1| (AB029619) hemagglutinin HA1 [Influenza B virus (B/Osaka/1059/97)]
Length = 353
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 175 GVSCSSGENLLVEVAPNTSGPFPYIHSQT 89
GV+ S+ ++L EV P TSG FP +H +T
Sbjct: 71 GVTPSAKASILHEVRPVTSGCFPIMHDRT 99
>ref|NP_055296.1| apurinic/apyrimidinic endonuclease(APEX nuclease)-like 2 protein
[Homo sapiens]
gb|AAD43041.1|AF119046_1 (AF119046) APE2 protein [Homo sapiens]
Length = 518
Score = 29.6 bits (65), Expect = 9.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = -3
Query: 479 LCXGHK------LASTPTANFTRRFHPYPRPKILDSDASQLCNF 366
LC GH+ P N RRF+ RP+ +D S CNF
Sbjct: 468 LCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNF 511
>dbj|BAA78422.1| (AB021260) APEX nuclease-like 2 protein [Homo sapiens]
emb|CAB45242.1| (AJ011311) AP endonuclease XTH2, putative [Homo sapiens]
dbj|BAB13764.1| (AB049211) apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
gb|AAH02959.1|AAH02959 (BC002959) apurinic/apyrimidinic endonuclease(APEX nuclease)-like 2
protein [Homo sapiens]
gb|AAH07669.1|AAH07669 (BC007669) apurinic/apyrimidinic endonuclease(APEX nuclease)-like 2
protein [Homo sapiens]
Length = 518
Score = 29.6 bits (65), Expect = 9.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = -3
Query: 479 LCXGHK------LASTPTANFTRRFHPYPRPKILDSDASQLCNF 366
LC GH+ P N RRF+ RP+ +D S CNF
Sbjct: 468 LCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNF 511
>ref|XP_010218.2| apurinic/apyrimidinic endonuclease(APEX nuclease)-like 2 protein
[Homo sapiens]
Length = 310
Score = 29.6 bits (65), Expect = 9.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = -3
Query: 479 LCXGHK------LASTPTANFTRRFHPYPRPKILDSDASQLCNF 366
LC GH+ P N RRF+ RP+ +D S CNF
Sbjct: 260 LCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNF 303
>gb|AAD42313.1| (AF129893) hemagglutinin precursor [influenza B virus
(B/Memphis/10/97)]
gb|AAD42314.1| (AF129894) hemagglutinin precursor [influenza B virus
(B/Memphis/12/97)]
Length = 584
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 175 GVSCSSGENLLVEVAPNTSGPFPYIHSQT 89
GV+ S+ ++L EV P TSG FP +H +T
Sbjct: 89 GVTPSAKASILHEVRPVTSGCFPIMHDRT 117
>gb|AAD29153.1|AF100355_1 (AF100355) hemagglutinin 1 subunit [Influenza B virus]
Length = 346
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 175 GVSCSSGENLLVEVAPNTSGPFPYIHSQT 89
GV+ S+ ++L EV P TSG FP +H +T
Sbjct: 74 GVTPSAKASILHEVRPVTSGCFPIMHDRT 102
>dbj|BAA86737.1| (AB027405) hemagglutinin precursor [Influenza B virus]
Length = 346
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 175 GVSCSSGENLLVEVAPNTSGPFPYIHSQT 89
GV+ S+ ++L EV P TSG FP +H +T
Sbjct: 74 GVTPSAKASILHEVRPVTSGCFPIMHDRT 102
>dbj|BAA89281.1| (AB036448) hemagglutinin [Influenza B virus]
Length = 335
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 175 GVSCSSGENLLVEVAPNTSGPFPYIHSQT 89
GV+ S+ ++L EV P TSG FP +H +T
Sbjct: 71 GVTPSAKASILHEVRPVTSGCFPIMHDRT 99
>gb|AAD29148.1|AF100350_1 (AF100350) hemagglutinin 1 subunit [Influenza B virus]
Length = 346
Score = 29.6 bits (65), Expect = 9.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 175 GVSCSSGENLLVEVAPNTSGPFPYIHSQT 89
GV+ S+ ++L EV P TSG FP +H +T
Sbjct: 74 GVTPSAKASILHEVRPVTSGCFPIMHDRT 102
>gb|AAD12162.1| (AF055922) tylosin resistance protein [Streptomyces fradiae]
Length = 280
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +3
Query: 192 KDIAVRQNCVFCDAALRLEEDEAKCENGHVF 284
K++ C C A LR + +CENGH F
Sbjct: 3 KNVVRYLRCPHCAAPLRSSDRTLRCENGHTF 33
>emb|CAB37345.2| (AJ009971) methyltransferase [Streptomyces fradiae]
Length = 280
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +3
Query: 192 KDIAVRQNCVFCDAALRLEEDEAKCENGHVF 284
K++ C C A LR + +CENGH F
Sbjct: 3 KNVVRYLRCPHCAAPLRSSDRTLRCENGHTF 33
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,429,339
Number of Sequences: 705144
Number of extensions: 4853145
Number of successful extensions: 16385
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 15651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16374
length of database: 222,175,239
effective HSP length: 109
effective length of database: 145,314,543
effective search space used: 7411041693
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)