Score E
Sequences producing significant alignments: (bits) Value
emb|CAC27452.1| (AJ297887) DigA protein [Aspergillus nidulans] 105 9e-41
ref|NP_013249.1| vacuolar membrane protein; Pep3p [Saccharo... 51 1e-09
dbj|BAA95999.1| (AB040908) KIAA1475 protein [Homo sapiens] 62 2e-09
gb|AAG34679.1|AF308802_1 (AF308802) vacuolar protein sortin... 62 2e-09
pir||T41607 probable vacuolar membrane protein - fission ye... 57 5e-08
gb|AAF88074.1|AC025417_2 (AC025417) T12C24.2 [Arabidopsis t... 49 1e-05
gb|AAF79641.1|AC025416_15 (AC025416) F5O11.22 [Arabidopsis ... 49 1e-05
gb|AAF45652.1| (AE003421) dor gene product [Drosophila mela... 45 3e-04
pir||S54252 deep orange protein - fruit fly (Drosophila mel... 45 3e-04
emb|CAB91628.1| (AJ289080) Vps18 protein [Candida albicans] 45 3e-04
sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN >gi|2832850|emb|CAA... 44 7e-04
pir||T34481 hypothetical protein W06B4.3 - Caenorhabditis e... 42 0.003
gb|AAC46819.2| (U23522) similar to vacuolar membrane protei... 42 0.003
dbj|BAB08428.1| (AB017067) gb|AAF32311.1~gene_id:MJC20.5~si... 35 0.33
emb|CAB95611.1| (AL359782) hypothetical protein, CHR1.386 [... 34 0.44
dbj|BAB22082.1| (AK002414) putative [Mus musculus] 32 1.7
sp|Q10322|DMA1_SCHPO DMA1 PROTEIN >gi|7490447|pir||T37862 d... 32 2.8
ref|NP_055463.1| KIAA0675 gene product [Homo sapiens] >gi|7... 32 2.8
gb|AAK40566.1| (AE006659) DNA-directed RNA polymerase, subu... 31 3.7
gb|AAF54693.1| (AE003692) CG6923 gene product [Drosophila m... 31 4.8
emb|CAB89426.1| (AL109839) dJ1069P2.3.4 (novel PABPC1 (poly... 30 6.3
emb|CAB89425.1| (AL109839) dJ1069P2.3.3 (novel PABPC1 (poly... 30 6.3
ref|NP_013669.1| component of rDNA transcription factor; Rr... 30 6.3
emb|CAB89424.1| (AL109839) dJ1069P2.3.2 (novel PABPC1 (poly... 30 6.3
emb|CAB89423.1| (AL109839) dJ1069P2.3.1 (novel PABPC1 (poly... 30 6.3
gb|AAF58107.2| (AE003809) CG8242 gene product [Drosophila m... 30 8.2
pir||T37635 hypothetical protein SPAC13F5.10 - fission yeas... 30 8.2
emb|CAB86414.1| (AL163191) hypothetical protein [Schizosacc... 30 8.2
pir||T00600 hypothetical protein T8K22.6 - Arabidopsis thal... 30 8.2
pir||T00603 hypothetical protein T8K22.9 - Arabidopsis thal... 30 8.2
gb|AAH01657.1|AAH01657 (BC001657) Unknown (protein for IMAG... 30 8.2
gb|AAK38349.1| (AY030283) PHD zinc finger transcription fac... 30 8.2
gb|AAC38289.1| (AF020428) ribonuclease inhibitor [Streptomy... 30 8.2
>emb|CAC27452.1| (AJ297887) DigA protein [Aspergillus nidulans]
Length = 963
Score = 105 bits (263), Expect(2) = 9e-41
Identities = 48/60 (80%), Positives = 54/60 (90%)
Frame = +3
Query: 12 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAG 191
TA I+ +IAALD RYAIVEPGEKC+TC LP+LSRQFFVFPCQH+FHSDCLGR+VLE AG
Sbjct: 839 TARQIRSEIAALDTRYAIVEPGEKCWTCSLPVLSRQFFVFPCQHAFHSDCLGREVLEGAG 898
Score = 81.6 bits (200), Expect(2) = 9e-41
Identities = 38/67 (56%), Positives = 50/67 (73%)
Frame = +1
Query: 190 AWGESSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAIKRIDEPFITHND 369
A G+ IR+LQ Q+ +G ++ +QRE VV ELD L+A +CILC D AIK+ID+PFIT D
Sbjct: 897 AGGKKKYIRDLQSQLNEGALTSSQREEVVKELDGLIAEACILCGDHAIKQIDKPFITATD 956
Query: 370 NVNEWIL 390
NV+EW L
Sbjct: 957 NVDEWCL 963
>ref|NP_013249.1| vacuolar membrane protein; Pep3p [Saccharomyces cerevisiae]
sp|P27801|PEP3_YEAST VACUOLAR MEMBRANE PROTEIN PEP3
pir||A41943 vacuolar membrane protein PEP3 - yeast (Saccharomyces cerevisiae)
gb|AAA34852.1| (M65144) PEP3 [Saccharomyces cerevisiae]
gb|AAB82382.1| (U53879) Pep3p: Vacuolar membrane protein [Saccharomyces
cerevisiae]
emb|CAA97720.1| (Z73320) ORF YLR148w [Saccharomyces cerevisiae]
Length = 918
Score = 51.2 bits (121), Expect(2) = 1e-09
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 24 IKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVL 179
I +I+ + Y I+EPG+ C CG L ++F VFPC H FH +C+ R +L
Sbjct: 806 INTEISKFNEIYRILEPGKSCDECGKFLQIKKFIVFPCGHCFHWNCIIRVIL 857
Score = 31.6 bits (70), Expect(2) = 1e-09
Identities = 11/35 (31%), Positives = 20/35 (56%)
Frame = +1
Query: 280 ELDALVASSCILCSDLAIKRIDEPFITHNDNVNEW 384
+L+ ++ C LCSD+ I +ID+P + +W
Sbjct: 882 DLENIIVEKCGLCSDININKIDQPISIDETELAKW 916
>dbj|BAA95999.1| (AB040908) KIAA1475 protein [Homo sapiens]
Length = 986
Score = 62.0 bits (149), Expect = 2e-09
Identities = 35/95 (36%), Positives = 49/95 (50%), Gaps = 6/95 (6%)
Frame = +3
Query: 12 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL------GRK 173
+A I+ D+ L RY VEP +KC TC PLL+R F++F C H FH+DCL G
Sbjct: 842 SAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLP 901
Query: 174 VLEQAGVGRVIAYQGTSNADTEGPGQWYAEGDGCGRTGRSR 296
+QA + + G + +G + G G SR
Sbjct: 902 AYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSR 942
Score = 42.7 bits (99), Expect = 0.001
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 250 SGTQRETVVAELDALVASSCILCSDLAIKRIDEPFI 357
+G RE + A+LD LVA+ C+ C +L I+ ID PFI
Sbjct: 938 AGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI 973
>gb|AAG34679.1|AF308802_1 (AF308802) vacuolar protein sorting protein 18 [Homo sapiens]
Length = 973
Score = 62.0 bits (149), Expect = 2e-09
Identities = 35/95 (36%), Positives = 49/95 (50%), Gaps = 6/95 (6%)
Frame = +3
Query: 12 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL------GRK 173
+A I+ D+ L RY VEP +KC TC PLL+R F++F C H FH+DCL G
Sbjct: 829 SAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLP 888
Query: 174 VLEQAGVGRVIAYQGTSNADTEGPGQWYAEGDGCGRTGRSR 296
+QA + + G + +G + G G SR
Sbjct: 889 AYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSR 929
Score = 42.7 bits (99), Expect = 0.001
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 250 SGTQRETVVAELDALVASSCILCSDLAIKRIDEPFI 357
+G RE + A+LD LVA+ C+ C +L I+ ID PFI
Sbjct: 925 AGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI 960
>pir||T41607 probable vacuolar membrane protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA21292.1| (AL031855) putative vacuolar membrane protein [Schizosaccharomyces
pombe]
Length = 900
Score = 57.4 bits (137), Expect = 5e-08
Identities = 23/64 (35%), Positives = 36/64 (55%)
Frame = +3
Query: 15 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGV 194
A I+ + + +RY ++EP E C+ C PL S F +FPCQH+FH C+ K + A
Sbjct: 814 AHEIQTNAENMRNRYIVLEPNESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEKTYKLASE 873
Query: 195 GRVI 206
++
Sbjct: 874 KNIL 877
>gb|AAF88074.1|AC025417_2 (AC025417) T12C24.2 [Arabidopsis thaliana]
Length = 1010
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 17/50 (34%)
Frame = +3
Query: 15 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQ-----------------FFVFPCQH 143
A NI+ DI+AL RYA+++ E+C C +L F+VFPC H
Sbjct: 835 ADNIRNDISALTQRYAVIDRDEECGVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGH 894
Query: 144 SFHSDCL 164
SFH+ CL
Sbjct: 895 SFHAQCL 901
Score = 33.5 bits (75), Expect = 0.75
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 244 LVSGTQRETVVAELDALVASSCILCSDLAIKRIDEPFITHNDN 372
+ S T + + +ELD +AS C C +L I I PFI D+
Sbjct: 944 ITSTTTADKLRSELDDAIASECPFCGELMINEITLPFIKPEDS 986
>gb|AAF79641.1|AC025416_15 (AC025416) F5O11.22 [Arabidopsis thaliana]
Length = 1063
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 17/50 (34%)
Frame = +3
Query: 15 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQ-----------------FFVFPCQH 143
A NI+ DI+AL RYA+++ E+C C +L F+VFPC H
Sbjct: 888 ADNIRNDISALTQRYAVIDRDEECGVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGH 947
Query: 144 SFHSDCL 164
SFH+ CL
Sbjct: 948 SFHAQCL 954
Score = 33.5 bits (75), Expect = 0.75
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 244 LVSGTQRETVVAELDALVASSCILCSDLAIKRIDEPFITHNDN 372
+ S T + + +ELD +AS C C +L I I PFI D+
Sbjct: 997 ITSTTTADKLRSELDDAIASECPFCGELMINEITLPFIKPEDS 1039
>gb|AAF45652.1| (AE003421) dor gene product [Drosophila melanogaster]
Length = 1002
Score = 44.7 bits (104), Expect = 3e-04
Identities = 20/59 (33%), Positives = 29/59 (48%)
Frame = +3
Query: 3 TRPTATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVL 179
T + ++ L VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 858 TTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVV 916
>pir||S54252 deep orange protein - fruit fly (Drosophila melanogaster)
emb|CAA60382.1| (X86683) deep orange (dor) [Drosophila melanogaster]
Length = 1002
Score = 44.7 bits (104), Expect = 3e-04
Identities = 20/59 (33%), Positives = 29/59 (48%)
Frame = +3
Query: 3 TRPTATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVL 179
T + ++ L VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 858 TTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVV 916
>emb|CAB91628.1| (AJ289080) Vps18 protein [Candida albicans]
Length = 810
Score = 44.7 bits (104), Expect = 3e-04
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 60 AIVEPGEKCYTCGLPLLSRQFFVFP-CQHSFHSDCL 164
AI+EPGE C CG L+ F FP C H+FH +C+
Sbjct: 761 AIIEPGEPCRKCGKLLVQENFVYFPNCHHAFHKECM 796
>sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN
emb|CAA16809.1| (AL021726) EG:171E4.1 [Drosophila melanogaster]
Length = 1002
Score = 43.5 bits (101), Expect = 7e-04
Identities = 18/38 (47%), Positives = 24/38 (62%)
Frame = +3
Query: 66 VEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVL 179
VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 879 VESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVV 916
>pir||T34481 hypothetical protein W06B4.3 - Caenorhabditis elegans
Length = 543
Score = 41.6 bits (96), Expect = 0.003
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 15 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL 164
A+ I+ L +R +V+P + C C P+ R F V C+H FH +CL
Sbjct: 400 ASEIRDKQEKLKNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECL 449
>gb|AAC46819.2| (U23522) similar to vacuolar membrane protein PEP3 (SP:PEP3_YEAST,
P27801) [Caenorhabditis elegans]
Length = 1010
Score = 41.6 bits (96), Expect = 0.003
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 15 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCL 164
A+ I+ L +R +V+P + C C P+ R F V C+H FH +CL
Sbjct: 867 ASEIRDKQEKLKNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECL 916
>dbj|BAB08428.1| (AB017067) gb|AAF32311.1~gene_id:MJC20.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 565
Score = 34.7 bits (78), Expect = 0.33
Identities = 20/61 (32%), Positives = 34/61 (54%)
Frame = -1
Query: 194 HARLLQYLSPQAIRVERVLTGKNKELSTQ*GQSTSITLLTRLHDCVAMVECSNINLDVGS 15
H RLLQ L P+ + R L+GK + +ST + T +T + V++ C+++ L G+
Sbjct: 460 HERLLQVLKPEPREMGRNLSGKAETMSTNVERKTVKVNITEI---VSVTPCADLTLPPGA 516
Query: 14 G 12
G
Sbjct: 517 G 517
>emb|CAB95611.1| (AL359782) hypothetical protein, CHR1.386 [Trypanosoma brucei]
Length = 731
Score = 34.3 bits (77), Expect = 0.44
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 7/53 (13%)
Frame = +3
Query: 6 RPTATNIKVDIA----ALDHRYAIVEPGEKC-YTCGLPL--LSRQFFVFPCQHSFHSDCL 164
RP A I+VD+ HR + E +C ++CGL + L PC H+F +CL
Sbjct: 578 RPVAQEIRVDVKNSLLTAMHRLIVAEEATECIFSCGLCMQPLKSPLTCVPCGHTFCEECL 637
>dbj|BAB22082.1| (AK002414) putative [Mus musculus]
Length = 379
Score = 32.3 bits (72), Expect = 1.7
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 57 YAIVEPG-EKCYTCGLPLLSRQFF-VFPCQHSFHSDCL 164
+++ EPG E C C ++Q+ V PC+H FH DC+
Sbjct: 317 HSLPEPGTETCAVCLDYFCNKQWLRVLPCKHEFHRDCV 354
>sp|Q10322|DMA1_SCHPO DMA1 PROTEIN
pir||T37862 dma1 protein - fission yeast (Schizosaccharomyces pombe)
emb|CAA93693.1| (Z69795) dma1 protein. [Schizosaccharomyces pombe]
emb|CAA57466.1| (X81883) non-essential gene [Schizosaccharomyces pombe]
Length = 267
Score = 31.6 bits (70), Expect = 2.8
Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Frame = +3
Query: 81 KCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 164
+C C +P+L Q FV PC HS+H C+
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCI 219
>ref|NP_055463.1| KIAA0675 gene product [Homo sapiens]
pir||T00362 hypothetical protein KIAA0675 - human
dbj|BAA31650.1| (AB014575) KIAA0675 protein [Homo sapiens]
Length = 1208
Score = 31.6 bits (70), Expect = 2.8
Identities = 13/39 (33%), Positives = 18/39 (45%)
Frame = +3
Query: 69 EPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQ 185
E E C C L V PC H FH+ C+ +++Q
Sbjct: 1143 EEEEPCVICHENLSPENLSVLPCAHKFHAQCIRPWLMQQ 1181
>gb|AAK40566.1| (AE006659) DNA-directed RNA polymerase, subunit A' (rpoA1)
[Sulfolobus solfataricus]
Length = 880
Score = 31.2 bits (69), Expect = 3.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 30 VDIAALDHRYAIVEPGEKCYTCG 98
++ + +D R ++EPG+KC TCG
Sbjct: 40 IEGSVMDPRLGVIEPGQKCPTCG 62
>gb|AAF54693.1| (AE003692) CG6923 gene product [Drosophila melanogaster]
Length = 1256
Score = 30.8 bits (68), Expect = 4.8
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Frame = +3
Query: 15 ATNIKVDIAALDHRYAIV-------EPGEKCYTC-GLPLLSRQFFVFPCQHSFHSDCL 164
AT ++ L H+Y V E EKC C L + + PC H FH+DC+
Sbjct: 1157 ATLETIERNTLPHKYRRVRRPSETDEDAEKCAICLNLFEIENEVRRLPCMHLFHTDCV 1214
>emb|CAB89426.1| (AL109839) dJ1069P2.3.4 (novel PABPC1 (poly(A)-binding protein,
cytoplasmic 1) (PABPL1) like protein (putative isoform
4)) [Homo sapiens]
Length = 328
Score = 30.4 bits (67), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 286 PVLPQP-SPSAYH*PGPSVSAFEVP*YAMTLPTPACSSTFRP 164
P +PQP + +AY+ GP P + P P+C+S RP
Sbjct: 117 PAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRP 158
>emb|CAB89425.1| (AL109839) dJ1069P2.3.3 (novel PABPC1 (poly(A)-binding protein,
cytoplasmic 1) (PABPL1) like protein (putative isoform
3)) [Homo sapiens]
Length = 347
Score = 30.4 bits (67), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 286 PVLPQP-SPSAYH*PGPSVSAFEVP*YAMTLPTPACSSTFRP 164
P +PQP + +AY+ GP P + P P+C+S RP
Sbjct: 117 PAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRP 158
>ref|NP_013669.1| component of rDNA transcription factor; Rrn11p [Saccharomyces
cerevisiae]
sp|Q04712|YME3_YEAST HYPOTHETICAL 59.3 KD PROTEIN IN PRP39-CAT2 INTERGENIC REGION
pir||S50949 hypothetical protein YML043c - yeast (Saccharomyces cerevisiae)
emb|CAA87831.1| (Z47816) unknown [Saccharomyces cerevisiae]
Length = 507
Score = 30.4 bits (67), Expect = 6.3
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Frame = +1
Query: 37 LLHSTIATQSWSLVRSVI--LVDCP-------Y*VDSSLFFPVSTRST---LIAWG-ERY 177
LLH ++ +WSL + L+ P + + + +S S+ + W + Y
Sbjct: 219 LLHLNVSRHNWSLAYKIFATLIRIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIY 278
Query: 178 WSRRAWGESSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAIKRIDEPFI 357
S+ + ++ R + Q G + T + + +L+ +C + + ID+PF
Sbjct: 279 SSKSRFVQNINYRSIVPPFQTGSRTHTAKFAITYLWSSLI--NCQKSMEPSSNIIDKPFD 336
Query: 358 THN-------DNVNEWIL*E---EDRSWWKRACXL*MSCHGLRSADTPQRWF 483
T N D ++EW+L ED W + SCH L ADT R F
Sbjct: 337 TENDLLQELIDKISEWVLTPPFMEDAEVW----FIYASCH-LLKADTLSRQF 383
>emb|CAB89424.1| (AL109839) dJ1069P2.3.2 (novel PABPC1 (poly(A)-binding protein,
cytoplasmic 1) (PABPL1) like protein (putative isoform
2)) [Homo sapiens]
Length = 325
Score = 30.4 bits (67), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 286 PVLPQP-SPSAYH*PGPSVSAFEVP*YAMTLPTPACSSTFRP 164
P +PQP + +AY+ GP P + P P+C+S RP
Sbjct: 117 PAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRP 158
>emb|CAB89423.1| (AL109839) dJ1069P2.3.1 (novel PABPC1 (poly(A)-binding protein,
cytoplasmic 1) (PABPL1) like protein (putative isoform
1)) [Homo sapiens]
Length = 322
Score = 30.4 bits (67), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 286 PVLPQP-SPSAYH*PGPSVSAFEVP*YAMTLPTPACSSTFRP 164
P +PQP + +AY+ GP P + P P+C+S RP
Sbjct: 117 PAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSCASMVRP 158
>gb|AAF58107.2| (AE003809) CG8242 gene product [Drosophila melanogaster]
Length = 422
Score = 30.0 bits (66), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 81 KCYTCGLPLLSRQFFVFPCQHSFHSDC 161
KC+ CG P+ + +V H++HS C
Sbjct: 367 KCFACGFPVEAGDRWVEALNHNYHSQC 393
>pir||T37635 hypothetical protein SPAC13F5.10 - fission yeast
(Schizosaccharomyces pombe)
Length = 393
Score = 30.0 bits (66), Expect = 8.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 169 ERYWSRRAWGESSRIRELQMQIQKGLVSGTQRE 267
+RY SRR W + +RIR M + G VS Q++
Sbjct: 73 QRYRSRRKWSDPTRIRLFTMYLDLGGVSTGQKQ 105
>emb|CAB86414.1| (AL163191) hypothetical protein [Schizosaccharomyces pombe]
Length = 399
Score = 30.0 bits (66), Expect = 8.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 169 ERYWSRRAWGESSRIRELQMQIQKGLVSGTQRE 267
+RY SRR W + +RIR M + G VS Q++
Sbjct: 79 QRYRSRRKWSDPTRIRLFTMYLDLGGVSTGQKQ 111
>pir||T00600 hypothetical protein T8K22.6 - Arabidopsis thaliana
gb|AAC18923.1| (AC004136) hypothetical protein [Arabidopsis thaliana]
Length = 627
Score = 30.0 bits (66), Expect = 8.2
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 69 EPGEKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 164
E G++CY+C + + +F C FH +C+
Sbjct: 114 EEGDECYSCSIQTIGTDYYFCATCDKRFHKECV 146
>pir||T00603 hypothetical protein T8K22.9 - Arabidopsis thaliana
gb|AAC18926.1| (AC004136) hypothetical protein [Arabidopsis thaliana]
Length = 627
Score = 30.0 bits (66), Expect = 8.2
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 69 EPGEKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 164
E G++CY+C + + +F C FH +C+
Sbjct: 114 EEGDECYSCSIQTIGTDYYFCATCDKRFHKECV 146
>gb|AAH01657.1|AAH01657 (BC001657) Unknown (protein for IMAGE:3356959) [Homo sapiens]
Length = 487
Score = 30.0 bits (66), Expect = 8.2
Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 5/51 (9%)
Frame = +3
Query: 12 TATNIKVDIAALDHRYAIVEPGEKCYTCG-----LPLLSRQFFVFPCQHSFHSDCL 164
T N+K LDH + P + C+TC PL+ + C FH DCL
Sbjct: 165 TGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDY----CPLLFHMDCL 216
>gb|AAK38349.1| (AY030283) PHD zinc finger transcription factor [Homo sapiens]
Length = 704
Score = 30.0 bits (66), Expect = 8.2
Identities = 18/51 (35%), Positives = 24/51 (46%), Gaps = 5/51 (9%)
Frame = +3
Query: 12 TATNIKVDIAALDHRYAIVEPGEKCYTCG-----LPLLSRQFFVFPCQHSFHSDCL 164
T N+K LDH + P + C+TC PL+ + C FH DCL
Sbjct: 250 TGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDY----CPLLFHMDCL 301
>gb|AAC38289.1| (AF020428) ribonuclease inhibitor [Streptomyces aureofaciens]
Length = 127
Score = 30.0 bits (66), Expect = 8.2
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +1
Query: 154 LIAWGERYWSRRAWGESSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAI 333
+I W SRR G +R+L++++ + V T RE V AEL A A D +
Sbjct: 56 VIEWRHHELSRRRLGCPETVRQLELRLAR--VHPTNREQVAAELAAARAGKGPTVFDWLV 113
Query: 334 KRIDE 348
I+E
Sbjct: 114 DIIEE 118
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,697,286
Number of Sequences: 705144
Number of extensions: 4162784
Number of successful extensions: 12323
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 11745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12280
length of database: 222,175,239
effective HSP length: 109
effective length of database: 145,314,543
effective search space used: 8137614408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)