Score E
Sequences producing significant alignments: (bits) Value
ref|NP_010997.1| 40S ribosomal protein S24A; Rps24ap [Sacch... 149 1e-35
sp|P14249|RS24_RHIRA 40S RIBOSOMAL PROTEIN S24 >gi|71040|pi... 141 3e-33
sp|O13784|R24A_SCHPO 40S RIBOSOMAL PROTEIN S24A >gi|7489982... 138 3e-32
pir||T43365 ribosomal protein S24 homolog - fission yeast ... 138 3e-32
sp|O59865|R24B_SCHPO 40S RIBOSOMAL PROTEIN S24B >gi|7489983... 137 7e-32
prf||1909359A ribosomal protein S19 [Solanum tuberosum] 125 2e-28
sp|Q9SS17|RS24_ARATH 40S RIBOSOMAL PROTEIN S24 >gi|12322851... 124 6e-28
sp|O42387|RS24_FUGRU 40S RIBOSOMAL PROTEIN S24 >gi|2369810|... 123 1e-27
emb|CAB40968.1| (AJ238272) 40S ribosomal protein S24 [Oryzi... 121 4e-27
dbj|BAB22498.1| (AK002986) putative [Mus musculus] 120 9e-27
pir||JC4671 ribosomal protein S24a - human >gi|311297|emb|C... 119 1e-26
ref|NP_001017.1| ribosomal protein S24 [Homo sapiens] >gi|1... 119 1e-26
dbj|BAB22143.1| (AK002495) putative [Mus musculus] >gi|1284... 119 1e-26
dbj|BAB26046.1| (AK009048) putative [Mus musculus] 119 1e-26
ref|NP_035427.1| ribosomal protein S24 [Mus musculus] >gi|5... 119 1e-26
sp|P02377|RS24_XENLA 40S RIBOSOMAL PROTEIN S24 (S19) >gi|71... 118 3e-26
gb|AAK62437.1|AF386992_1 (AF386992) Unknown protein [Arabid... 117 5e-26
dbj|BAB27225.1| (AK010856) putative [Mus musculus] 117 8e-26
gb|AAF46871.1| (AE003458) CG3751 gene product [Drosophila m... 117 8e-26
gb|AAG23693.1| (AF298769) 40S ribosomal protein S24 [Zea mays] 116 1e-25
emb|CAB64902.1| (AJ245654) 40S ribosomal protein S19 [Cyano... 115 3e-25
gb|AAK16518.1|AF331158_1 (AF331158) ribosomal protein S24 [... 112 2e-24
pir||T32583 hypothetical protein T07A9.11 - Caenorhabditis ... 111 3e-24
gb|AAF64318.1|AF252289_1 (AF252289) 40S ribosomal protein S... 91 8e-18
ref|NP_113450.1| 40S ribosomal protein S24 [Guillardia thet... 74 1e-12
ref|NP_127362.1| SSU ribosomal protein S24E [Pyrococcus aby... 55 3e-07
sp|O26367|RS24_METTH 30S RIBOSOMAL PROTEIN S24E >gi|7440533... 50 2e-05
sp|P19953|RS24_HALMA 30S RIBOSOMAL PROTEIN S24E (HS15) (E1.... 49 3e-05
gb|AAB63880.1| (U97388) 40S ribosomal protein S24 homolog [... 48 4e-05
pir||E72714 probable ribosomal protein S24 APE1132 - Aeropy... 48 6e-05
ref|NP_111002.1| 30S ribosomal protein S24E [Thermoplasma v... 48 6e-05
sp|Q9YCY0|RS24_AERPE 30S RIBOSOMAL PROTEIN S24E 48 6e-05
ref|NP_069943.1| SSU ribosomal protein S24E (rps24E) [Archa... 45 4e-04
gb|AAG20206.1| (AE005097) 30S ribosomal protein S24E; Rps24... 44 6e-04
emb|CAC12220.1| (AL445066) ribosomal protein S24 related pr... 41 0.005
gb|AAK40760.1| (AE006676) SSU ribosomal protein S24E (rps24... 40 0.016
gb|AAA45901.1| (M26282) protein T1 [Human herpesvirus 4] 36 0.23
pir||S77938 EBNA-LP protein - human herpesvirus 4 >gi|33040... 36 0.23
gb|AAA45882.1| (M14976) IB4WY-1 polypeptide [Human herpesvi... 36 0.23
sp|P54032|RS24_METJA 30S RIBOSOMAL PROTEIN S24E >gi|2129265... 36 0.23
gb|AAA66537.1| (M12553) unknown protein [Human herpesvirus 4] 33 1.5
pir||I40542 xpsR protein - Pseudomonas solanacearum >gi|603... 32 3.3
gb|AAB23798.1| nuclear antigen 5, EBNA 5 {alternatively spl... 32 4.3
gb|AAB23799.1| nuclear antigen 5, EBNA 5 {alternatively spl... 32 4.3
pir||T22531 hypothetical protein F53A2.7 - Caenorhabditis e... 31 7.4
ref|NP_084535.1| hypothetical protein MGC7036 [Mus musculus... 30 9.6
gb|AAG51342.1|AC012562_3 (AC012562) thioredoxin-like protei... 30 9.6
>ref|NP_010997.1| 40S ribosomal protein S24A; Rps24ap [Saccharomyces cerevisiae]
ref|NP_012195.1| 40S ribosomal protein S24B; Rps24bp [Saccharomyces cerevisiae]
sp|P26782|RS24_YEAST 40S RIBOSOMAL PROTEIN S24 (RP50)
pir||S48410 ribosomal protein S24.e, cytosolic - yeast (Saccharomyces
cerevisiae)
emb|CAA86154.1| (Z38060) spliced ribosomal protein, len: 135, CAI: 0.76, similar to
RS24_HUMAN P16632 40S RIBOSOMAL PROTEIN S24 (S19)
[Saccharomyces cerevisiae]
gb|AAB64613.1| (U18814) Rps24eap: 40S ribosomal protein S24E (RP50) [Saccharomyces
cerevisiae]
Length = 135
Score = 149 bits (376), Expect = 1e-35
Identities = 72/100 (72%), Positives = 82/100 (82%)
Frame = +3
Query: 51 VTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQF 230
VT+RTRK I NPLL RKQ VVD+LHPNRAN+SK+ELREKL +YKA+KD +SVFG RTQF
Sbjct: 5 VTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQF 64
Query: 231 GGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERAS 350
GGGK+ GF LVY+S KKFEP YRLVR GLA K E+AS
Sbjct: 65 GGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKAS 104
>sp|P14249|RS24_RHIRA 40S RIBOSOMAL PROTEIN S24
pir||R3UD24 ribosomal protein S24 - Rhizomucor racemosus
emb|CAA33608.1| (X15582) ribosomal protein [Mucor racemosus]
Length = 148
Score = 141 bits (356), Expect = 3e-33
Identities = 64/96 (66%), Positives = 82/96 (84%)
Frame = +3
Query: 42 DSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLR 221
D+ VT+RTRKF+ N LL RKQMVVD++HP AN+SK+ELR K+G +YKA K+ +SVFG +
Sbjct: 21 DAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKADKEVVSVFGFK 80
Query: 222 TQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLA 329
T FGGGKTTGFAL+YD+ EA+K FEP++RLVR+GLA
Sbjct: 81 THFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLA 116
>sp|O13784|R24A_SCHPO 40S RIBOSOMAL PROTEIN S24A
pir||T37838 40s ribosomal protein s24a - fission yeast (Schizosaccharomyces
pombe)
emb|CAB16217.1| (Z99162) 40s ribosomal protein s24a. [Schizosaccharomyces pombe]
Length = 134
Score = 138 bits (348), Expect = 3e-32
Identities = 66/100 (66%), Positives = 78/100 (78%)
Frame = +3
Query: 51 VTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQF 230
VT+RTRKF+ N LL RKQMVVDILHP +ANISK +LREKLG +YK + FGLRT +
Sbjct: 5 VTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHY 64
Query: 231 GGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERAS 350
GGG+TTGFAL+YD EAMKKFEP YRLVRVG A ++ +
Sbjct: 65 GGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVA 104
>pir||T43365 ribosomal protein S24 homolog - fission yeast (Schizosaccharomyces
pombe) (fragment)
dbj|BAA28751.1| (AB015168) ribosomal protein S24 homolog [Schizosaccharomyces
pombe]
Length = 138
Score = 138 bits (347), Expect = 3e-32
Identities = 65/108 (60%), Positives = 82/108 (75%)
Frame = +3
Query: 27 KMADNDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQIS 206
K++ VT+RTRKF+ N LL RKQMVVDILHP +AN+SK E+REKL +YK + +
Sbjct: 1 KISKMSEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQ 60
Query: 207 VFGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERAS 350
FGLRT FGGG++TGFAL+YDS E+MKKFEP YRLVRVG A ++ +
Sbjct: 61 AFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVA 108
>sp|O59865|R24B_SCHPO 40S RIBOSOMAL PROTEIN S24B
pir||T39730 40s ribosomal protein s24b - fission yeast (Schizosaccharomyces
pombe)
emb|CAB52805.1| (AL109846) 40s ribosomal protein s24b [Schizosaccharomyces pombe]
Length = 134
Score = 137 bits (344), Expect = 7e-32
Identities = 64/100 (64%), Positives = 79/100 (79%)
Frame = +3
Query: 51 VTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQF 230
VT+RTRKF+ N LL RKQMVVDILHP +AN+SK E+REKL +YK + + FGLRT F
Sbjct: 5 VTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHF 64
Query: 231 GGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERAS 350
GGG++TGFAL+YDS E+MKKFEP YRLVRVG A ++ +
Sbjct: 65 GGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVA 104
>prf||1909359A ribosomal protein S19 [Solanum tuberosum]
Length = 133
Score = 125 bits (315), Expect = 2e-28
Identities = 60/102 (58%), Positives = 78/102 (75%), Gaps = 1/102 (0%)
Frame = +3
Query: 42 DSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQ-KDQISVFGL 218
D VT+RTRKF+ N LL RKQ ++D+LHP RAN+SK EL+EKL +Y+ + + I VF
Sbjct: 3 DKAVTIRTRKFMTNRLLARKQFIIDVLHPGRANVSKAELKEKLARMYEVKDTNAIFVFKF 62
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERA 347
RT FGGGK+TGF L+YDS E KK+EP+YRL+R GL TK E++
Sbjct: 63 RTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS 105
>sp|Q9SS17|RS24_ARATH 40S RIBOSOMAL PROTEIN S24
gb|AAG51413.1|AC009465_13 (AC009465) putative ribosomal protein s19 or s24; 43956-42880
[Arabidopsis thaliana]
Length = 133
Score = 124 bits (310), Expect = 6e-28
Identities = 59/102 (57%), Positives = 79/102 (76%), Gaps = 1/102 (0%)
Frame = +3
Query: 42 DSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQK-DQISVFGL 218
+ VT+RTRKF+ N LL RKQ V+D+LHP RAN+SK EL+EKL +Y+ + + I VF
Sbjct: 3 EKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKF 62
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERA 347
RT FGGGK++GF L+YD+ E+ KKFEP+YRL+R GL TK E++
Sbjct: 63 RTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKS 105
>sp|O42387|RS24_FUGRU 40S RIBOSOMAL PROTEIN S24
emb|CAA04728.1| (AJ001398) ribosomal protein S24 [Takifugu rubripes]
Length = 132
Score = 123 bits (308), Expect = 1e-27
Identities = 62/99 (62%), Positives = 75/99 (75%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMVVD+LHP +A + K E+REKL +YK D + VFG
Sbjct: 2 NDT-VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RTQFGGGKTTGFA+VYDS + KK EP++RL R GL K
Sbjct: 61 RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEK 99
>emb|CAB40968.1| (AJ238272) 40S ribosomal protein S24 [Oryzias latipes]
Length = 132
Score = 121 bits (303), Expect = 4e-27
Identities = 61/99 (61%), Positives = 74/99 (74%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMVVD+LHP +A + K E+REKL +YK D + VFG
Sbjct: 2 NDT-VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RTQFGGGKTTGFA+VYDS + KK EP++RL GL K
Sbjct: 61 RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEK 99
>dbj|BAB22498.1| (AK002986) putative [Mus musculus]
Length = 131
Score = 120 bits (300), Expect = 9e-27
Identities = 59/99 (59%), Positives = 74/99 (74%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMV+D+LHP +A + K E+REKL +YK+ D I VFG
Sbjct: 2 NDT-VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKSTPDVIFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RT FGGGKTTGF ++YDS + KK EP++RL R GL K
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>pir||JC4671 ribosomal protein S24a - human
emb|CAA42829.1| (X60289) ribosomal protein S24 [Mus musculus]
gb|AAB08007.1| (U12202) ribosomal protein S24 [Homo sapiens]
gb|AAH00523.1|AAH00523 (BC000523) Similar to ribosomal protein S24 [Homo sapiens]
dbj|BAB23973.1| (AK005358) putative [Mus musculus]
dbj|BAB28304.1| (AK012537) putative [Mus musculus]
gb|AAH03149.1|AAH03149 (BC003149) ribosomal protein S24 [Homo sapiens]
Length = 130
Score = 119 bits (299), Expect = 1e-26
Identities = 59/99 (59%), Positives = 73/99 (73%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMV+D+LHP +A + K E+REKL +YK D I VFG
Sbjct: 2 NDT-VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RT FGGGKTTGF ++YDS + KK EP++RL R GL K
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>ref|NP_001017.1| ribosomal protein S24 [Homo sapiens]
ref|XP_011914.1| ribosomal protein S24 [Homo sapiens]
ref|NP_112374.1| ribosomal protein S24 [Rattus norvegicus]
sp|P16632|RS24_HUMAN 40S RIBOSOMAL PROTEIN S24 (S19)
pir||R3RT24 ribosomal protein S24, cytosolic [validated] - rat
pir||R3HY24 ribosomal protein S24 - golden hamster
pir||JH0213 ribosomal protein S24, cytosolic - human
emb|CAA36884.1| (X52658) ribosomal protein S19 (AA 1 - 133) [Mesocricetus auratus]
emb|CAA35918.1| (X51538) ribosomal protein S24 (AA 1-133) [Rattus rattus]
emb|CAA36684.1| (X52445) ribosomal protein S24 [Rattus norvegicus]
gb|AAA36588.1| (M31520) ribosomal protein S24 [Homo sapiens]
gb|AAB08006.1| (U12202) ribosomal protein S24 [Homo sapiens]
dbj|BAB25248.1| (AK007776) putative [Mus musculus]
dbj|BAB31355.1| (AK018704) putative [Mus musculus]
Length = 133
Score = 119 bits (299), Expect = 1e-26
Identities = 59/99 (59%), Positives = 73/99 (73%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMV+D+LHP +A + K E+REKL +YK D I VFG
Sbjct: 2 NDT-VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RT FGGGKTTGF ++YDS + KK EP++RL R GL K
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>dbj|BAB22143.1| (AK002495) putative [Mus musculus]
dbj|BAB25640.1| (AK008386) putative [Mus musculus]
Length = 134
Score = 119 bits (299), Expect = 1e-26
Identities = 59/99 (59%), Positives = 73/99 (73%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMV+D+LHP +A + K E+REKL +YK D I VFG
Sbjct: 2 NDT-VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RT FGGGKTTGF ++YDS + KK EP++RL R GL K
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>dbj|BAB26046.1| (AK009048) putative [Mus musculus]
Length = 132
Score = 119 bits (299), Expect = 1e-26
Identities = 59/99 (59%), Positives = 73/99 (73%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMV+D+LHP +A + K E+REKL +YK D I VFG
Sbjct: 2 NDT-VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RT FGGGKTTGF ++YDS + KK EP++RL R GL K
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>ref|NP_035427.1| ribosomal protein S24 [Mus musculus]
pir||S40161 ribosomal protein S24, cytosolic - mouse
emb|CAA50792.1| (X71972) ribosomal protein S24 [Mus musculus]
Length = 131
Score = 119 bits (299), Expect = 1e-26
Identities = 59/99 (59%), Positives = 73/99 (73%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMV+D+LHP +A + K E+REKL +YK D I VFG
Sbjct: 2 NDT-VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RT FGGGKTTGF ++YDS + KK EP++RL R GL K
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>sp|P02377|RS24_XENLA 40S RIBOSOMAL PROTEIN S24 (S19)
pir||R3XL19 ribosomal protein S24 - African clawed frog
emb|CAA24704.1| (V01443) ribsomal protein S19 [Xenopus laevis]
Length = 132
Score = 118 bits (296), Expect = 3e-26
Identities = 58/99 (58%), Positives = 73/99 (73%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RTRKF+ N LL RKQMV+D+LHP +A + K E+REKL +YK D I VFG
Sbjct: 2 NDT-VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RT FGGGKTTGF ++YDS + KK EP++RL + GL K
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEK 99
>gb|AAK62437.1|AF386992_1 (AF386992) Unknown protein [Arabidopsis thaliana]
Length = 133
Score = 117 bits (294), Expect = 5e-26
Identities = 56/102 (54%), Positives = 76/102 (73%), Gaps = 1/102 (0%)
Frame = +3
Query: 42 DSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQ-KDQISVFGL 218
+ VT+RTR F+ N LL RKQ V+D+LHP RAN+SK EL+EKL +Y+ + + I F
Sbjct: 3 EKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKF 62
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERA 347
RT FGGGK++G+ L+YD+ E KKFEP+YRL+R GL TK E++
Sbjct: 63 RTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKS 105
>dbj|BAB27225.1| (AK010856) putative [Mus musculus]
Length = 133
Score = 117 bits (292), Expect = 8e-26
Identities = 58/99 (58%), Positives = 72/99 (72%)
Frame = +3
Query: 39 NDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGL 218
ND+ VT+RT KF+ N LL RKQMV+D+LHP +A + K E+REKL +YK D I VFG
Sbjct: 2 NDT-VTIRTGKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGF 60
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 335
RT FGGGKTTGF ++YDS + KK EP++RL R GL K
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>gb|AAF46871.1| (AE003458) CG3751 gene product [Drosophila melanogaster]
Length = 131
Score = 117 bits (292), Expect = 8e-26
Identities = 53/91 (58%), Positives = 70/91 (76%)
Frame = +3
Query: 54 TLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFG 233
T+RTRKF+ N LL RKQMV D+LHP ++++K E+REKL ++YK D + FG RT FG
Sbjct: 7 TIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYKVTPDVVFAFGFRTNFG 66
Query: 234 GGKTTGFALVYDSPEAMKKFEPQYRLVRVGL 326
GG++TGFAL+YD+ + KKFEP+YRL R GL
Sbjct: 67 GGRSTGFALIYDTLDFAKKFEPKYRLARHGL 97
>gb|AAG23693.1| (AF298769) 40S ribosomal protein S24 [Zea mays]
Length = 137
Score = 116 bits (291), Expect = 1e-25
Identities = 59/106 (55%), Positives = 80/106 (74%), Gaps = 3/106 (2%)
Frame = +3
Query: 30 MADND--SPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQK-DQ 200
MAD+ S VT KF+ N LL RKQ V++++HP RAN+SK EL+E+L +Y+ + +
Sbjct: 1 MADSKATSAVTSALGKFMTNRLLARKQFVLEVIHPGRANVSKAELKERLAKMYEVKDPNT 60
Query: 201 ISVFGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERA 347
I VF RT FGGGK+TGF L+YD+ E+ KKFEP+YRL+R GLATK E++
Sbjct: 61 IFVFKFRTHFGGGKSTGFGLIYDNLESAKKFEPKYRLIRNGLATKVEKS 109
>emb|CAB64902.1| (AJ245654) 40S ribosomal protein S19 [Cyanophora paradoxa]
Length = 133
Score = 115 bits (287), Expect = 3e-25
Identities = 55/95 (57%), Positives = 70/95 (72%), Gaps = 1/95 (1%)
Frame = +3
Query: 42 DSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKD-QISVFGL 218
D T+RTRKF+ N LL RKQ V+D+LHP RAN+SK ELREKL +YK ++ V+G
Sbjct: 3 DKTCTIRTRKFMTNRLLNRKQFVIDVLHPGRANVSKNELREKLAKMYKVDDPARVLVYGF 62
Query: 219 RTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGL 326
RT FGGGK+TGF L+YDS KK E ++RLVR+G+
Sbjct: 63 RTGFGGGKSTGFGLIYDSVAFAKKTESKFRLVRIGM 98
>gb|AAK16518.1|AF331158_1 (AF331158) ribosomal protein S24 [Trichinella spiralis]
Length = 136
Score = 112 bits (280), Expect = 2e-24
Identities = 58/124 (46%), Positives = 78/124 (62%)
Frame = +3
Query: 30 MADNDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISV 209
M DS +T+RTRK + N LL RKQM+VD++HPN+ +SK L E L YK D +
Sbjct: 1 MVLTDSTITVRTRKLMTNRLLCRKQMIVDVIHPNKDGVSKATLCEMLAKSYKTTPDVVFC 60
Query: 210 FGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERASXXXXXXXXXXXXT 389
FG RT +GGG+++GFAL+YD+ + KKFEP++RLVR GL T+ ER
Sbjct: 61 FGFRTCYGGGRSSGFALIYDALDYAKKFEPKHRLVRKGLLTR-ERTGRKQRKERKNRMKK 119
Query: 390 LRGT 401
+RGT
Sbjct: 120 VRGT 123
>pir||T32583 hypothetical protein T07A9.11 - Caenorhabditis elegans
gb|AAK39283.1| (AF036706) Contains similarity to Pfam domain: PF01282
(Ribosomal_S24e), Score=134.5, E-value=6e-37, N=1
[Caenorhabditis elegans]
Length = 327
Score = 111 bits (278), Expect = 3e-24
Identities = 56/117 (47%), Positives = 75/117 (63%)
Frame = +3
Query: 51 VTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQF 230
VT+RTRK + N LL RKQMVV+++HP R + K ++REK+ LYK D + FG ++
Sbjct: 5 VTIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKI 64
Query: 231 GGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATKAERASXXXXXXXXXXXXTLRGT 401
GGGK+ GFALVYD+ + KKFEP+YRL +GLATK E+ +RGT
Sbjct: 65 GGGKSKGFALVYDTIDFAKKFEPKYRL--MGLATKVEKPGRKQRKERKNRQKKVRGT 119
>gb|AAF64318.1|AF252289_1 (AF252289) 40S ribosomal protein S24e [Leishmania amazonensis]
Length = 137
Score = 90.5 bits (223), Expect = 8e-18
Identities = 44/91 (48%), Positives = 64/91 (69%), Gaps = 2/91 (2%)
Frame = +3
Query: 51 VTLRTRKFIRNPLLGRKQMVVDILHPNRAN-ISKEELREKLGSLYKA-QKDQISVFGLRT 224
V++RT +F N LL RKQ +V++ HP+ + + +R+KL LYK Q+S+FG +T
Sbjct: 10 VSIRTSQFKVNKLLNRKQFIVEVNHPHWCGTVPTQLIRKKLAVLYKVPDASQVSLFGFKT 69
Query: 225 QFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVG 323
+FGGGKTTGF L+YD ++K+FEP YR R+G
Sbjct: 70 KFGGGKTTGFGLIYDDLASLKRFEPNYRKTRMG 102
>ref|NP_113450.1| 40S ribosomal protein S24 [Guillardia theta]
emb|CAC27019.1| (AJ010592) 40S ribosomal protein S24 [Guillardia theta]
Length = 129
Score = 73.6 bits (179), Expect = 1e-12
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +3
Query: 30 MADNDSPVTLRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQ-IS 206
M D + + L+T+KF NPLL RKQ ++ I + NISKE LR +L Y+ + I
Sbjct: 1 MLDINDNIVLKTKKFKNNPLLKRKQFLLSIDRKKKFNISKEWLRIELSKYYRIKDPSLIF 60
Query: 207 VFGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGL 326
+FGL+ FGG K + F +Y + EA + EP++RL++ L
Sbjct: 61 IFGLKNNFGGFKCSAFVYIYYNLEAARVNEPKHRLIKNNL 100
>ref|NP_127362.1| SSU ribosomal protein S24E [Pyrococcus abyssi]
pir||B75019 ssu ribosomal protein s24e (rps24e) PAB3419 - Pyrococcus abyssi
(strain Orsay)
emb|CAB50592.1| (AJ248288) SSU ribosomal protein S24E (rps24E) [Pyrococcus abyssi]
Length = 99
Score = 55.5 bits (132), Expect = 3e-07
Identities = 27/87 (31%), Positives = 48/87 (55%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
N L+GRK++ +I HP S+++++ KL ++ + + +R+ FG K+ G+A
Sbjct: 11 NKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAK 70
Query: 261 VYDSPEAMKKFEPQYRLVRVGLATKAE 341
Y + M EP+Y L+R G+ K E
Sbjct: 71 YYYDKDRMLYIEPEYILIRDGIIEKKE 97
>sp|O26367|RS24_METTH 30S RIBOSOMAL PROTEIN S24E
pir||F69133 ribosomal protein S24 - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB84773.1| (AE000812) ribosomal protein S24 [Methanothermobacter
thermautotrophicus]
Length = 100
Score = 49.7 bits (117), Expect = 2e-05
Identities = 26/87 (29%), Positives = 49/87 (55%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NPLL RK++ + L+ + E++ KL ++ A KD + V + FG + TG+A
Sbjct: 11 NPLLNRKEIRFECLYEGESTPKVLEVKNKLVAMLDADKDLLVVDKIDQGFGEPRATGYAK 70
Query: 261 VYDSPEAMKKFEPQYRLVRVGLATKAE 341
+Y+S E + + EP++ + + A++ E
Sbjct: 71 IYESAEKLTEIEPEHVIKKNTEASEEE 97
>sp|P19953|RS24_HALMA 30S RIBOSOMAL PROTEIN S24E (HS15) (E1.2)
pir||R3HS15 ribosomal protein S24.eR [validated] - Haloarcula marismortui
emb|CAA49707.1| (X70117) ribosomal protein HS15 [Haloarcula marismortui]
Length = 102
Score = 48.9 bits (115), Expect = 3e-05
Identities = 26/87 (29%), Positives = 46/87 (51%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NP+L R + +++H + A S+ +R+ L + +++ + L T+FG KT G+A
Sbjct: 11 NPMLHRTDVRFEVVH-DEATPSRLSVRDSLAATLNKDAEEVVIHKLDTKFGMRKTVGYAK 69
Query: 261 VYDSPEAMKKFEPQYRLVRVGLATKAE 341
VYD+PE + E + L R + E
Sbjct: 70 VYDNPEYARDVEQDHMLERNKIVADGE 96
>gb|AAB63880.1| (U97388) 40S ribosomal protein S24 homolog [Schizosaccharomyces
pombe]
Length = 37
Score = 48.1 bits (113), Expect = 4e-05
Identities = 22/37 (59%), Positives = 29/37 (77%)
Frame = +3
Query: 57 LRTRKFIRNPLLGRKQMVVDILHPNRANISKEELREK 167
+RTR+F+ LL RKQMV DIL P +AN++K E+REK
Sbjct: 1 IRTRRFMTKRLLQRKQMVGDILRPGKANLAKNEIREK 37
>pir||E72714 probable ribosomal protein S24 APE1132 - Aeropyrum pernix (strain
K1)
dbj|BAA80117.1| (AP000060) 119aa long hypothetical 30S ribosomal protein S24
[Aeropyrum pernix]
Length = 119
Score = 47.8 bits (112), Expect = 6e-05
Identities = 28/89 (31%), Positives = 46/89 (51%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NPL+ R+++V+ + H + + LR+KL + +I + ++T +G G +
Sbjct: 29 NPLVKRREIVMILHHELKPTPMRIMLRQKLAEVLGVDIKRIYIRYIKTGYGAGLSKVRVH 88
Query: 261 VYDSPEAMKKFEPQYRLVRVGLATKAERA 347
VYDSPE FEP+Y + R G E A
Sbjct: 89 VYDSPERALSFEPKYIIERNGGVNPFEEA 117
>ref|NP_111002.1| 30S ribosomal protein S24E [Thermoplasma volcanium]
dbj|BAB59624.1| (AP000992) ribosomal protein small subunit S24 [Thermoplasma
volcanium]
Length = 99
Score = 47.8 bits (112), Expect = 6e-05
Identities = 26/85 (30%), Positives = 42/85 (48%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NP+L RK++ + N S+EE++E + AQK+ I V + G + G+
Sbjct: 12 NPILKRKELKYTLKFENARTPSREEIKEIIAKHEGAQKELIIVESNKQLTGKHEIVGYTK 71
Query: 261 VYDSPEAMKKFEPQYRLVRVGLATK 335
+Y + +EP Y L+R GL K
Sbjct: 72 IYQDKASAMLYEPDYELIRNGLKQK 96
>sp|Q9YCY0|RS24_AERPE 30S RIBOSOMAL PROTEIN S24E
Length = 102
Score = 47.8 bits (112), Expect = 6e-05
Identities = 28/89 (31%), Positives = 46/89 (51%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NPL+ R+++V+ + H + + LR+KL + +I + ++T +G G +
Sbjct: 12 NPLVKRREIVMILHHELKPTPMRIMLRQKLAEVLGVDIKRIYIRYIKTGYGAGLSKVRVH 71
Query: 261 VYDSPEAMKKFEPQYRLVRVGLATKAERA 347
VYDSPE FEP+Y + R G E A
Sbjct: 72 VYDSPERALSFEPKYIIERNGGVNPFEEA 100
>ref|NP_069943.1| SSU ribosomal protein S24E (rps24E) [Archaeoglobus fulgidus]
sp|O29151|RS24_ARCFU 30S RIBOSOMAL PROTEIN S24E
pir||A69389 SSU ribosomal protein S24E (rps24E) homolog - Archaeoglobus
fulgidus
gb|AAB90128.1| (AE001027) SSU ribosomal protein S24E (rps24E) [Archaeoglobus
fulgidus]
Length = 110
Score = 45.1 bits (105), Expect = 4e-04
Identities = 24/89 (26%), Positives = 51/89 (56%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NPLL R+++ + + S++E+R K+ L A+ +++ V ++T+FG + +
Sbjct: 14 NPLLRRREVYCRLSFEGKTP-SRKEVRGKIAGLMNAEPERVVVDYIKTEFGKTEAKCYVK 72
Query: 261 VYDSPEAMKKFEPQYRLVRVGLATKAERA 347
+YD+ E ++K E ++ + R + +AE A
Sbjct: 73 IYDTVEDLQKIEEEHIIERNKVEEQAEEA 101
>gb|AAG20206.1| (AE005097) 30S ribosomal protein S24E; Rps24e [Halobacterium sp.
NRC-1]
Length = 102
Score = 44.3 bits (103), Expect = 6e-04
Identities = 28/79 (35%), Positives = 41/79 (51%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NPLL R + I+H + A S+ +R+ L + +++ V L T+FG KT G A
Sbjct: 11 NPLLHRTDVQFKIVHDD-ATPSRLSVRDSLAAKLDKDSEEVVVHELDTKFGMRKTRGRAK 69
Query: 261 VYDSPEAMKKFEPQYRLVR 317
VYDSP + E + L R
Sbjct: 70 VYDSPAQAAEVEHDHMLER 88
>emb|CAC12220.1| (AL445066) ribosomal protein S24 related protein [Thermoplasma
acidophilum]
Length = 98
Score = 41.2 bits (95), Expect = 0.005
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NP+L RK++ + + S+EE++E + K+ + V + G + G+
Sbjct: 11 NPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTK 70
Query: 261 VY-DSPEAMKKFEPQYRLVRVGLATK 335
+Y D P AM +EP Y L+R GL K
Sbjct: 71 IYADKPSAML-YEPDYELIRNGLKQK 95
>gb|AAK40760.1| (AE006676) SSU ribosomal protein S24E (rps24E) [Sulfolobus
solfataricus]
Length = 120
Score = 39.7 bits (91), Expect = 0.016
Identities = 19/81 (23%), Positives = 45/81 (55%)
Frame = +3
Query: 75 IRNPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGF 254
++N ++GR+++ + + H S++++ + + +Q++ + V + T +G G +
Sbjct: 21 MQNSVIGRREISLKVYHMGSGTPSRKDIIKAIIQALGSQENLVVVRKISTSYGAGISNVK 80
Query: 255 ALVYDSPEAMKKFEPQYRLVR 317
+Y S E ++K EP+Y L R
Sbjct: 81 LHIYKSREILEKVEPKYLLDR 101
>gb|AAA45901.1| (M26282) protein T1 [Human herpesvirus 4]
Length = 261
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 91 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 150
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 151 PRGDRSEG 158
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 25 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 84
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 85 PRGDRSEG 92
Score = 33.1 bits (74), Expect = 1.5
Identities = 25/61 (40%), Positives = 31/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 157 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 216
Query: 314 ARWPR 328
PR
Sbjct: 217 PLRPR 221
>pir||S77938 EBNA-LP protein - human herpesvirus 4
gb|AAA45890.1| (K03489) leader protein (EBNA-LP) [Human herpesvirus 4]
Length = 308
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 6 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 65
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 66 PRGDRSEG 73
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 138 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 197
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 198 PRGDRSEG 205
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 72 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 131
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 132 PRGDRSEG 139
Score = 33.1 bits (74), Expect = 1.5
Identities = 25/61 (40%), Positives = 31/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 204 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 263
Query: 314 ARWPR 328
PR
Sbjct: 264 PLRPR 268
>gb|AAA45882.1| (M14976) IB4WY-1 polypeptide [Human herpesvirus 4]
Length = 506
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 72 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 131
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 132 PRGDRSEG 139
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 6 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 65
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 66 PRGDRSEG 73
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 204 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 263
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 264 PRGDRSEG 271
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 270 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 329
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 330 PRGDRSEG 337
Score = 35.8 bits (81), Expect = 0.23
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 138 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 197
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 198 PRGDRSEG 205
Score = 33.1 bits (74), Expect = 1.5
Identities = 25/61 (40%), Positives = 31/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 402 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 461
Query: 314 ARWPR 328
PR
Sbjct: 462 PLRPR 466
Score = 32.0 bits (71), Expect = 3.3
Identities = 25/64 (39%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RS +P R Q+ R R L + EEV + P G
Sbjct: 336 EGPGPTRPGPPGIGPEGPLGQLLRRHRSLSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 395
Query: 314 ARWPRHQG 337
R R +G
Sbjct: 396 PRGDRSEG 403
>sp|P54032|RS24_METJA 30S RIBOSOMAL PROTEIN S24E
pir||B64349 ribosomal protein S24 - Methanococcus jannaschii
gb|AAB98384.1| (U67492) SSU ribosomal protein S24E [Methanococcus jannaschii]
Length = 101
Score = 35.8 bits (81), Expect = 0.23
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 81 NPLLGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFAL 260
NPLL RK+ + H K+ ++ KL ++ A KD + V + + G + G+A
Sbjct: 11 NPLLKRKEYRFIVDHDGPTPTFKD-VKLKLAAILNANKDLLIVEKIVEEAGMQRARGYAK 69
Query: 261 VYDSPEAMKKFEPQYRL 311
+YD+ E +K E ++ L
Sbjct: 70 LYDNEEMLKLVEREHIL 86
>gb|AAA66537.1| (M12553) unknown protein [Human herpesvirus 4]
Length = 110
Score = 33.1 bits (74), Expect = 1.5
Identities = 25/61 (40%), Positives = 31/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 146 QGGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIG 313
+G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 6 EGPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSG 65
Query: 314 ARWPR 328
PR
Sbjct: 66 PLRPR 70
>pir||I40542 xpsR protein - Pseudomonas solanacearum
gb|AAC46363.1| (U18136) XpsR [Ralstonia solanacearum]
Length = 307
Score = 32.0 bits (71), Expect = 3.3
Identities = 17/55 (30%), Positives = 24/55 (42%), Gaps = 3/55 (5%)
Frame = -2
Query: 393 GGSFVGSCAACAAVGKHARPWWRGQRAPIGTEARTSSWP---RGSHRRERSRWSCHHR 229
GG+ G+ C K PW AP+G + ++W R HR RW H +
Sbjct: 24 GGNPAGAVWFC---DKDPHPWTESLVAPLGPREQPNAWGKVFRARHRDSMERWQSHQK 78
>gb|AAB23798.1| nuclear antigen 5, EBNA 5 {alternatively spliced} [Epstein-Barr
virus, Daudi, Peptide, 89 aa]
Length = 89
Score = 31.6 bits (70), Expect = 4.3
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 185 GPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGARWPRHQ 334
GPEGP +L RSP+P R Q+ R R L + EEV + P G R R +
Sbjct: 19 GPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGPRGDRSE 72
>gb|AAB23799.1| nuclear antigen 5, EBNA 5 {alternatively spliced} [Epstein-Barr
virus, Daudi, Peptide, 110 aa]
Length = 110
Score = 31.6 bits (70), Expect = 4.3
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 185 GPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGARWPRHQ 334
GPEGP +L RSP+P R Q+ R R L + EEV + P G R R +
Sbjct: 19 GPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGPRGDRSE 72
>pir||T22531 hypothetical protein F53A2.7 - Caenorhabditis elegans
emb|CAB04455.1| (Z81546) contains similarity to Pfam domain: PF00108 (Thiolase),
Score=660.3, E-value=3.2e-195, N=1~cDNA EST yk110b8.3
comes from this gene; cDNA EST yk114h4.3 comes from this
gene~cDNA EST yk110b8.5 comes from this gene; cDNA EST
yk114h4.5 comes from >
Length = 441
Score = 30.8 bits (68), Expect = 7.4
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 4/64 (6%)
Frame = +3
Query: 36 DNDSPVTLRTRKFIRNPLLGRK----QMVVDILHPNRANISKEELREKLGSLYKAQKDQI 203
+N S V R LG+K M+ D L A ++ + EKLG+ YK + +
Sbjct: 119 ENMSMVPFAVRDIRFGTALGKKYEFEDMLWDSLSDPYAKLAMGQTAEKLGAQYKVTRQEA 178
Query: 204 SVFGLRTQ 227
F LR+Q
Sbjct: 179 DEFALRSQ 186
>ref|NP_084535.1| hypothetical protein MGC7036 [Mus musculus]
gb|AAH03324.1|AAH03324 (BC003324) Unknown (protein for MGC:7036) [Mus musculus]
Length = 197
Score = 30.4 bits (67), Expect = 9.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 90 LGRKQMVVDILHPNRANISKEELREKLGSLYKAQKDQISV 209
LG +MVVD+ PNR + +ELRE L K + + V
Sbjct: 105 LGPDKMVVDLTDPNRPRFTLQELREVLQERNKLKSQLLLV 144
>gb|AAG51342.1|AC012562_3 (AC012562) thioredoxin-like protein; 56513-57227 [Arabidopsis
thaliana]
Length = 140
Score = 30.4 bits (67), Expect = 9.6
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = -3
Query: 113 NDHLLTAQQRVADELASSEGDGRVVVRHFA 24
N HL+T ++ D+LA ++ DG++VV +F+
Sbjct: 24 NVHLITTKESWDDKLAEADRDGKIVVANFS 53
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,350,486
Number of Sequences: 705144
Number of extensions: 4052457
Number of successful extensions: 14346
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 13689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14336
length of database: 222,175,239
effective HSP length: 113
effective length of database: 142,493,967
effective search space used: 12396975129
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)