Score E
Sequences producing significant alignments: (bits) Value
emb|CAB70603.1| (AJ271142) histone-fold protein CHRAC subun... 63 1e-09
gb|AAC15237.1| (AF026550) CCAAT-binding transcription facto... 62 3e-09
dbj|BAA25636.1| (AB010432) HAPE [Aspergillus oryzae] 61 6e-09
emb|CAB61070.1| (AL132949) predicted using Genefinder~conta... 60 1e-08
ref|NP_063949.1| DNA polymerase epsilon p12 subunit [Homo s... 60 1e-08
ref|NP_009837.1| C and C' subunits of DNA polymerase II; Dp... 60 1e-08
emb|CAA41403.1| (X58500) DNA polymerase II subunit C [Sacch... 60 1e-08
gb|AAK68863.1| (AF120159) CCAAT-binding protein subunit HAP... 60 1e-08
gb|AAD12363.1| (U96847) HapE [Emericella nidulans] 60 1e-08
dbj|BAB09133.1| (AB025619) transcription factor Hap5a-like ... 58 5e-08
gb|AAF46843.1| (AE003457) CG11301 gene product [Drosophila ... 58 5e-08
ref|NP_080158.1| RIKEN cDNA 2400007P05 gene [Mus musculus] ... 57 6e-08
ref|NP_065617.1| NF-YC-like protein [Mus musculus] >gi|7677... 57 1e-07
gb|AAF46204.1| (AE003438) CG3075 gene product [Drosophila m... 56 2e-07
dbj|BAB08812.1| (AB007649) transcription factor Hap5a-like ... 56 2e-07
pir||T46203 transcription factor Hap5a - Arabidopsis thalia... 56 2e-07
gb|AAF06791.1|AF193440_1 (AF193440) heme activated protein ... 56 2e-07
gb|AAB70410.1| (AC000106) Similar to Schizosaccharomyces CC... 55 2e-07
gb|AAC64892.1| (AC005388) Similar to Schizosaccharomyces CC... 55 2e-07
dbj|BAA81759.1| (AP000364) Similar to sequence of BAC F7G19... 55 3e-07
gb|AAF79844.1|AC026875_24 (AC026875) T6D22.7 [Arabidopsis t... 55 4e-07
ref|NP_059140.1| chromatin accessibility complex 1; histone... 54 7e-07
dbj|BAA99521.1| (AP002484) hypothetical protein [Oryza sativa] 53 1e-06
gb|AAF02832.1|AC009894_3 (AC009894) transcription factor ha... 52 3e-06
dbj|BAA87312.1| (AB028008) Hypothetical nuclear protein [Sc... 52 3e-06
emb|CAA74053.1| (Y13725) Transcription factor [Arabidopsis ... 52 3e-06
sp|Q10315|YD63_SCHPO HYPOTHETICAL 22.2 KD PROTEIN C17G8.03C... 52 3e-06
emb|CAA99055.1| (Z74792) CCAAT transcription binding factor... 52 3e-06
sp|P79007|PHP5_SCHPO TRANSCRIPTIONAL ACTIVATOR PHP5 >gi|749... 52 3e-06
dbj|BAA14051.1| (D89986) HSM-2 [Homo sapiens] 52 3e-06
pir||I59348 CCAAT binding transcription factor CBF subunit ... 51 6e-06
gb|AAG28389.1|AF191744_1 (AF191744) NFY-C variant DS2.8 [Ho... 51 6e-06
dbj|BAA91100.1| (AK000346) unnamed protein product [Homo sa... 51 6e-06
gb|AAC50816.1| (U62296) transcription factor NF-YC subunit ... 51 6e-06
dbj|BAA12818.1| (D85425) transactivator HSM-1 [Homo sapiens] 51 6e-06
ref|NP_055038.2| nuclear transcription factor Y, gamma; CCA... 51 6e-06
dbj|BAA22216.1| (AB006181) nuclear factor YC [Mus musculus] 51 6e-06
ref|NP_036998.1| CCAAT binding factor of CBF-C/NFY-C [Rattu... 51 6e-06
ref|NP_015003.1| Component, along with Hap2p and Hap3p, of ... 50 1e-05
prf||2105237A CCAAT-binding factor [Saccharomyces cerevisiae] 50 1e-05
gb|AAC82337.1| (AF041205) nuclear Y/CCAAT-box binding facto... 50 1e-05
ref|NP_012470.1| Yjl065cp [Saccharomyces cerevisiae] >gi|73... 50 1e-05
ref|NP_032718.1| nuclear transcription factor-Y gamma [Mus ... 49 2e-05
pir||T32269 hypothetical protein F23F1.1 - Caenorhabditis e... 49 3e-05
dbj|BAB09134.1| (AB025619) contains similarity to transcrip... 48 4e-05
dbj|BAB10588.1| (AB017070) gene_id:MNL12.7~unknown protein ... 47 6e-05
gb|AAK68346.1|AF024493_1 (AF024493) Hypothetical protein F2... 47 8e-05
dbj|BAB11281.1| (AB005247) gene_id:MXA21.21~unknown protein... 45 4e-04
dbj|BAB09132.1| (AB025619) contains similarity to transcrip... 39 0.023
emb|CAA74054.1| (Y13726) Transcription factor [Arabidopsis ... 37 0.067
pir||S70618 transcription regulator NC2 alpha chain - human... 36 0.15
ref|NP_009836.1| Ybr277cp [Saccharomyces cerevisiae] >gi|58... 36 0.15
gb|AAH02090.1|AAH02090 (BC002090) Similar to DR1-associated... 36 0.19
ref|NP_015236.1| serum response factor-like protein; Rlm1p ... 35 0.43
ref|NP_041761.1| early protein [Human papillomavirus type 1... 34 0.74
emb|CAB86690.1| (AL163492) hypoothetical protein L787.06 [L... 34 0.74
pir||T18597 hypothetical protein AC3.5 - Caenorhabditis ele... 34 0.74
pir||S53348 nuclear fusion protein BIK1 - yeast (Saccharomy... 33 1.3
ref|XP_010698.2| nuclear transcription factor Y, gamma [Hom... 33 1.3
gb|AAG51032.1|AC069474_31 (AC069474) unknown protein; 69004... 32 2.1
ref|NP_006433.1| DR1-associated protein 1 (negative cofacto... 32 2.8
pir||H83276 probable lipase PA2949 [imported] - Pseudomonas... 32 2.8
ref|NP_012471.1| Yjl064wp [Saccharomyces cerevisiae] >gi|13... 32 2.8
gb|AAG15389.1| (AF302258) NC2alpha [Drosophila melanogaster] 32 3.7
gb|AAK31540.1| (AF040646) Similar to sugar transporter; cod... 31 6.2
pir||T32816 hypothetical protein H17B01.1b - Caenorhabditis... 31 6.2
ref|NP_041368.1| regulatory protein [Human papillomavirus t... 30 8.1
ref|NP_043374.1| transforming protein E6 [Human papillomavi... 30 8.1
>emb|CAB70603.1| (AJ271142) histone-fold protein CHRAC subunit [Drosophila
melanogaster]
gb|AAF48131.1| (AE003488) joey gene product [Drosophila melanogaster]
Length = 140
Score = 62.8 bits (151), Expect = 1e-09
Identities = 32/116 (27%), Positives = 62/116 (52%)
Frame = +2
Query: 50 PPRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLD 229
P + PT + LPLSRV+ I+ + L +N F++T E+FV+HLA ++ + +
Sbjct: 9 PVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTE-EFG 67
Query: 230 RKPRRNIQYKDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSND 397
++P ++Y+ ++ V + NLEFL VP+ + + + ++ D+ +D
Sbjct: 68 QRPGEALKYEHLSQVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGSDDDDDD 123
>gb|AAC15237.1| (AF026550) CCAAT-binding transcription factor subunit AAB-1
[Neurospora crassa]
Length = 271
Score = 61.6 bits (148), Expect = 3e-09
Identities = 39/125 (31%), Positives = 60/125 (47%), Gaps = 2/125 (1%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+QLPL+R+KK++ DPE+ + S A + ++F+ L + A + RR +Q
Sbjct: 86 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDIFITELTMRAWIHA--EENKRRTLQR 143
Query: 257 KDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAA--KATQARLQGDNSNDQTINFPVANGA 430
D+ASA++ D +FL D VP+ H K A A A N+ Q P G
Sbjct: 144 SDIASALSKSDMFDFLIDIVPREEASTHAKRATGQSAAAAAQAAQNAAQQAQGMP---GV 200
Query: 431 KKPHVNG 451
P+ G
Sbjct: 201 AAPNHGG 207
>dbj|BAA25636.1| (AB010432) HAPE [Aspergillus oryzae]
Length = 265
Score = 60.8 bits (146), Expect = 6e-09
Identities = 33/98 (33%), Positives = 56/98 (56%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+QLPL+R+KK++ DPE+ + S A + ++F+ L + A+ D K RR +Q
Sbjct: 85 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDIFITELTMRAWIHAE-DNK-RRTLQR 142
Query: 257 KDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQA 370
D+A+A++ D +FL D VP+ H K +++A A
Sbjct: 143 SDIAAALSKSDMFDFLIDIVPREEATSHAKRSSQAAGA 180
>emb|CAB61070.1| (AL132949) predicted using Genefinder~contains similarity to Pfam
domain: PF00808 (Histone-like transcription factor
(CBF/NF-Y) and archaeal histone), Score=24.6,
E-value=0.00077, N=1~cDNA EST yk326c8.3 comes from this
gene~cDNA EST yk393b2.3 comes fro>
Length = 179
Score = 60.1 bits (144), Expect = 1e-08
Identities = 31/88 (35%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Frame = +2
Query: 74 QNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQ 253
++QLPL RVKK++ +P++ + +N A ++ AAE+F++ L+ +++ A L++ R+ +Q
Sbjct: 33 RSQLPLGRVKKVVRMNPDVEMLNNEALQLMAKAAELFIKELSNAANQNAALEK--RKTVQ 90
Query: 254 YKDVASAVAHHDNLEFLEDTV---PKTVPYK 337
KD+ A+ FLED + PK P K
Sbjct: 91 TKDIDKAIKKTWAFAFLEDALDGWPKLEPKK 121
>ref|NP_063949.1| DNA polymerase epsilon p12 subunit [Homo sapiens]
gb|AAF90132.1|AF261688_1 (AF261688) DNA polymerase epsilon p12 subunit [Homo sapiens]
Length = 117
Score = 60.1 bits (144), Expect = 1e-08
Identities = 31/104 (29%), Positives = 62/104 (58%)
Frame = +2
Query: 5 ASDPSTTMPYNTTAIPPRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMF 184
A + + + P T++P + ++LPL+RVK ++ DP++ L A F++ AAE+F
Sbjct: 19 AGEAAASQPQAPTSVPGAR----LSRLPLARVKALVKADPDVTLAGQEAIFILARAAELF 74
Query: 185 VQHLAEESHKQAKLDRKPRRNIQYKDVASAVAHHDNLEFLEDTV 316
V+ +A++++ A+ + R+ +Q +D+ +A+ D FLE T+
Sbjct: 75 VETIAKDAYCCAQQGK--RKTLQRRDLDNAIEAVDEFAFLEGTL 116
>ref|NP_009837.1| C and C' subunits of DNA polymerase II; Dpb3p [Saccharomyces
cerevisiae]
sp|P27344|DPB3_YEAST DNA POLYMERASE EPSILON SUBUNIT C (DNA POLYMERASE II SUBUNIT C)
pir||S44540 DNA-directed DNA polymerase (EC 2.7.7.7) II chain C - yeast
(Saccharomyces cerevisiae)
emb|CAA53641.1| (X76053) YBR2015-ORF [Saccharomyces cerevisiae]
emb|CAA85242.1| (Z36146) ORF YBR278w [Saccharomyces cerevisiae]
prf||2206494D DPB3 gene [Saccharomyces cerevisiae]
Length = 201
Score = 59.7 bits (143), Expect = 1e-08
Identities = 37/107 (34%), Positives = 56/107 (51%), Gaps = 2/107 (1%)
Frame = +2
Query: 86 PLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQ--YK 259
P+S+VKKI DPE + SN A AAE+FVQ+L EES A+L+ K + +++
Sbjct: 13 PISKVKKIAKCDPEYVITSNVAISATAFAAELFVQNLVEESLVLAQLNSKGKTSLRLSLN 72
Query: 260 DVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSNDQTI 406
+ V DN FLED + + K A K + +Q S+ + +
Sbjct: 73 SIEECVEKRDNFRFLEDAIKQ---LKKNSALDKKRELNMQPGRSDQEVV 118
>emb|CAA41403.1| (X58500) DNA polymerase II subunit C [Saccharomyces cerevisiae]
Length = 201
Score = 59.7 bits (143), Expect = 1e-08
Identities = 37/107 (34%), Positives = 56/107 (51%), Gaps = 2/107 (1%)
Frame = +2
Query: 86 PLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQ--YK 259
P+S+VKKI DPE + SN A AAE+FVQ+L EES A+L+ K + +++
Sbjct: 13 PISKVKKIAKCDPEYVITSNVAISATAFAAELFVQNLVEESLVLAQLNSKGKTSLRLSLN 72
Query: 260 DVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSNDQTI 406
+ V DN FLED + + K A K + +Q S+ + +
Sbjct: 73 SIEECVEKRDNFRFLEDAIKQ---LKKNSALDKKRELNMQPGRSDQEVV 118
>gb|AAK68863.1| (AF120159) CCAAT-binding protein subunit HAP5 [Hypocrea jecorina]
Length = 283
Score = 59.7 bits (143), Expect = 1e-08
Identities = 31/90 (34%), Positives = 49/90 (54%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+QLPL+R+KK++ DPE+ + S A + ++F+ L + A + RR +Q
Sbjct: 86 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDIFITELTMRAWIHA--EENKRRTLQR 143
Query: 257 KDVASAVAHHDNLEFLEDTVPKTVPYKHIK 346
D+ASA+A D +FL D VP+ H K
Sbjct: 144 SDIASALAKSDMFDFLIDIVPREEATAHAK 173
>gb|AAD12363.1| (U96847) HapE [Emericella nidulans]
Length = 265
Score = 59.7 bits (143), Expect = 1e-08
Identities = 32/98 (32%), Positives = 56/98 (56%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+QLPL+R+KK++ DPE+ + S A + ++F+ L + A+ D K RR +Q
Sbjct: 85 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAE-DNK-RRTLQR 142
Query: 257 KDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQA 370
D+A+A++ D +FL D VP+ H K ++++ A
Sbjct: 143 SDIAAALSKSDMFDFLIDIVPREEATSHAKRSSQSAGA 180
>dbj|BAB09133.1| (AB025619) transcription factor Hap5a-like [Arabidopsis thaliana]
Length = 202
Score = 57.8 bits (138), Expect = 5e-08
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
QLPL+R+KKI+ DP++ + S A + A EMF+ L S K + R +Q
Sbjct: 54 QLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRS--WLKAEENKRHTLQKS 111
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+++AVA +FL D VPK
Sbjct: 112 DISNAVASSFTYDFLLDVVPK 132
>gb|AAF46843.1| (AE003457) CG11301 gene product [Drosophila melanogaster]
Length = 155
Score = 57.8 bits (138), Expect = 5e-08
Identities = 30/96 (31%), Positives = 51/96 (52%)
Frame = +2
Query: 20 TTMPYNTTAIPPRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLA 199
T P P QLPL+R++ I+ DP++ + +N A F++ A E+F+ L+
Sbjct: 57 TEKPVTNGNKAPADNEAKMTQLPLARIRNIMKLDPDLHMANNEAVFIVAKAVELFIASLS 116
Query: 200 EESHKQAKLDRKPRRNIQYKDVASAVAHHDNLEFLE 307
ES+ +K + IQ +DV A++ D+L FL+
Sbjct: 117 RESYTYTAQSKK--KTIQKRDVDMAISAVDSLLFLD 150
>ref|NP_080158.1| RIKEN cDNA 2400007P05 gene [Mus musculus]
dbj|BAB26722.1| (AK010135) putative [Mus musculus]
dbj|BAB26833.1| (AK010300) putative [Mus musculus]
dbj|BAB27723.1| (AK011595) putative [Mus musculus]
Length = 118
Score = 57.4 bits (137), Expect = 6e-08
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Frame = +2
Query: 53 PRKEPTGQ--NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKL 226
P P G ++LPL+RVK ++ DP++ L A F++ AAE+FV+ +A++++ A+
Sbjct: 30 PTSAPGGVRLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQ 89
Query: 227 DRKPRRNIQYKDVASAVAHHDNLEFLEDTV 316
+ R+ +Q +D+ +A+ D FLE T+
Sbjct: 90 GK--RKTLQRRDLDNAIEAVDEFAFLEGTL 117
>ref|NP_065617.1| NF-YC-like protein [Mus musculus]
gb|AAF67145.1| (AF230805) NF-YC-like protein [Mus musculus]
dbj|BAB27197.1| (AK010812) putative [Mus musculus]
Length = 129
Score = 56.6 bits (135), Expect = 1e-07
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Frame = +2
Query: 59 KEPTGQNQL---PLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLD 229
KE G +L PLSR++ I+ PE++ + A + A E+FVQ+LA S++
Sbjct: 8 KEKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHG--S 65
Query: 230 RKPRRNIQYKDVASAVAHHDNLEFLEDTVPKTV-PYKHIKAAAKATQARLQGDNSND 397
K ++ + Y D+AS + L+FL D +PK + K++K + + + DN +D
Sbjct: 66 GKAKKALTYSDLASTAEDSETLQFLADILPKKILASKYLKMLKEKREE--EEDNEDD 120
>gb|AAF46204.1| (AE003438) CG3075 gene product [Drosophila melanogaster]
Length = 601
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/80 (35%), Positives = 43/80 (53%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKD 262
LPL+R+KKI+ D + + A + A E F+Q L H + RR +Q D
Sbjct: 154 LPLARIKKIMKLDENAKMIAGEAPLLFAKACEYFIQELT--MHAWVHTEESRRRTLQRSD 211
Query: 263 VASAVAHHDNLEFLEDTVPK 322
+A A+A++D +FL D VP+
Sbjct: 212 IAQAIANYDQFDFLIDIVPR 231
>dbj|BAB08812.1| (AB007649) transcription factor Hap5a-like protein [Arabidopsis
thaliana]
Length = 250
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/82 (35%), Positives = 46/82 (55%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+QLPL+R+KKI+ D ++ + S A + A E+F+ L S A + RR +Q
Sbjct: 77 HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA--EENKRRTLQK 134
Query: 257 KDVASAVAHHDNLEFLEDTVPK 322
D+A+A+ D +FL D VP+
Sbjct: 135 NDIAAAITRTDIFDFLVDIVPR 156
>pir||T46203 transcription factor Hap5a - Arabidopsis thaliana
emb|CAB62348.1| (AL133315) transcription factor Hap5a [Arabidopsis thaliana]
Length = 234
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/82 (35%), Positives = 46/82 (55%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+QLPL+R+KKI+ D ++ + S A + A E+F+ L S A + RR +Q
Sbjct: 64 HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA--EENKRRTLQK 121
Query: 257 KDVASAVAHHDNLEFLEDTVPK 322
D+A+A+ D +FL D VP+
Sbjct: 122 NDIAAAITRTDIFDFLVDIVPR 143
>gb|AAF06791.1|AF193440_1 (AF193440) heme activated protein [Arabidopsis thaliana]
Length = 231
Score = 55.8 bits (133), Expect = 2e-07
Identities = 30/83 (36%), Positives = 45/83 (54%)
Frame = +2
Query: 74 QNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQ 253
++ LPL+R+KKI+ D ++ + S A V A EMF+ L S + RR +Q
Sbjct: 78 KHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHT--EENKRRTLQ 135
Query: 254 YKDVASAVAHHDNLEFLEDTVPK 322
D+A+AV D +FL D VP+
Sbjct: 136 KNDIAAAVTRTDIFDFLVDIVPR 158
>gb|AAB70410.1| (AC000106) Similar to Schizosaccharomyces CCAAT-binding factor
(gb|U88525). EST gb|T04310 comes from this gene.
[Arabidopsis thaliana]
Length = 208
Score = 55.5 bits (132), Expect = 2e-07
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+ LPL+R+KKI+ D ++ + S A V A EMF+ L S + RR +Q
Sbjct: 56 HSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHT--EENKRRTLQK 113
Query: 257 KDVASAVAHHDNLEFLEDTVPK 322
D+A+AV D +FL D VP+
Sbjct: 114 NDIAAAVTRTDIFDFLVDIVPR 135
>gb|AAC64892.1| (AC005388) Similar to Schizosaccharomyces CCAAT-binding factor
F7G19.16 gi|1922964 from Arabidopsis thaliana BAC
gb|AC000106. EST gb|H36963 comes from this gene.
gb|AAG51114.1|AC069144_11 (AC069144) heme activated protein, putative [Arabidopsis thaliana]
Length = 217
Score = 55.5 bits (132), Expect = 2e-07
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+ LPL+R+KKI+ D ++ + S A V A EMF+ L S + RR +Q
Sbjct: 69 HSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHT--EENKRRTLQK 126
Query: 257 KDVASAVAHHDNLEFLEDTVPK 322
D+A+AV D +FL D VP+
Sbjct: 127 NDIAAAVTRTDIFDFLVDIVPR 148
>dbj|BAA81759.1| (AP000364) Similar to sequence of BAC F7G19 from Arabidopsis
thaliana. (AC000106) [Oryza sativa]
Length = 205
Score = 55.1 bits (131), Expect = 3e-07
Identities = 32/95 (33%), Positives = 49/95 (50%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+ LPL+R+KKI+ D ++ + + A V A EMF+ L A + RR +Q
Sbjct: 89 HNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHA--EENKRRTLQK 146
Query: 257 KDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKA 361
D+A+A+A + +FL D VP+ AAA A
Sbjct: 147 SDIAAAIARTEVFDFLVDIVPRDEAKDAEAAAAVA 181
>gb|AAF79844.1|AC026875_24 (AC026875) T6D22.7 [Arabidopsis thaliana]
Length = 206
Score = 54.7 bits (130), Expect = 4e-07
Identities = 25/81 (30%), Positives = 49/81 (59%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+ P++R+++I+ D +A F++ A EMF++ +EE++ + D+K + I YK
Sbjct: 109 KFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKK--KFIHYK 166
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
++S V++ EFL D+VP+
Sbjct: 167 HLSSVVSNDQRYEFLADSVPE 187
>ref|NP_059140.1| chromatin accessibility complex 1; histone-fold protein CHRAC15
[Homo sapiens]
ref|XP_005131.1| chromatin accessibility complex 1 [Homo sapiens]
gb|AAF72416.1| (AF226076) CHRAC15 [Homo sapiens]
dbj|BAB14601.1| (AK023537) unnamed protein product [Homo sapiens]
Length = 131
Score = 53.9 bits (128), Expect = 7e-07
Identities = 30/105 (28%), Positives = 51/105 (48%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKD 262
LPLSR++ I+ PE++ + A + A E+FVQ LA S++ K ++ + Y D
Sbjct: 19 LPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHG--SGKEKKVLTYSD 76
Query: 263 VASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSND 397
+A+ + +FL D +PK + K + +N ND
Sbjct: 77 LANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDND 121
>dbj|BAA99521.1| (AP002484) hypothetical protein [Oryza sativa]
Length = 286
Score = 53.1 bits (126), Expect = 1e-06
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKD 262
LPL RVK+II D +I +N AA +I A E+FV LA +H+ A R+ RR ++
Sbjct: 167 LPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFVGSLAAGAHRAA--SRRGRRAVRAVH 224
Query: 263 V-ASAVAHHDNLEFLEDTVPKTVPYKHIKAAA 355
V A+A H +FL D +P +AAA
Sbjct: 225 VRAAAREHRPTADFLLDCLPAAEEAAPARAAA 256
>gb|AAF02832.1|AC009894_3 (AC009894) transcription factor hap5b [Arabidopsis thaliana]
gb|AAG50900.1|AC069159_1 (AC069159) transcription factor [Arabidopsis thaliana]
Length = 137
Score = 52.0 bits (123), Expect = 3e-06
Identities = 26/80 (32%), Positives = 44/80 (54%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKD 262
LPL+R+KKI+ D ++ + S A + A EMF+ L + + RR +Q D
Sbjct: 15 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRA--WIHTEENKRRTLQKND 72
Query: 263 VASAVAHHDNLEFLEDTVPK 322
+A+A++ D +FL D +P+
Sbjct: 73 IAAAISRTDVFDFLVDIIPR 92
>dbj|BAA87312.1| (AB028008) Hypothetical nuclear protein [Schizosaccharomyces pombe]
Length = 172
Score = 52.0 bits (123), Expect = 3e-06
Identities = 30/113 (26%), Positives = 57/113 (49%)
Frame = +2
Query: 35 NTTAIPPRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHK 214
N + P +++ P++R+KKI+ D ++ + +++ A E+F+Q + +ES K
Sbjct: 8 NDSETKPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCK 67
Query: 215 QAKLDRKPRRNIQYKDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQAR 373
Q +L + R + + + AV + +FL+D V K IKA K + R
Sbjct: 68 QTRLHQAKRVTVSH--LKHAVQSVEQFDFLQDIVEKVPDAPPIKAERKTKRPR 118
>emb|CAA74053.1| (Y13725) Transcription factor [Arabidopsis thaliana]
Length = 131
Score = 52.0 bits (123), Expect = 3e-06
Identities = 26/80 (32%), Positives = 44/80 (54%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKD 262
LPL+R+KKI+ D ++ + S A + A EMF+ L + + RR +Q D
Sbjct: 15 LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRA--WIHTEENKRRTLQKND 72
Query: 263 VASAVAHHDNLEFLEDTVPK 322
+A+A++ D +FL D +P+
Sbjct: 73 IAAAISRTDVFDFLVDIIPR 92
>sp|Q10315|YD63_SCHPO HYPOTHETICAL 22.2 KD PROTEIN C17G8.03C IN CHROMOSOME I
pir||T37855 probable transcription repressor - fission yeast
(Schizosaccharomyces pombe)
emb|CAA93686.1| (Z69795) putative transcriptional repressor [Schizosaccharomyces
pombe]
Length = 199
Score = 52.0 bits (123), Expect = 3e-06
Identities = 30/113 (26%), Positives = 57/113 (49%)
Frame = +2
Query: 35 NTTAIPPRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHK 214
N + P +++ P++R+KKI+ D ++ + +++ A E+F+Q + +ES K
Sbjct: 8 NDSETKPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCK 67
Query: 215 QAKLDRKPRRNIQYKDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQAR 373
Q +L + R + + + AV + +FL+D V K IKA K + R
Sbjct: 68 QTRLHQAKRVTVSH--LKHAVQSVEQFDFLQDIVEKVPDAPPIKAERKTKRPR 118
>emb|CAA99055.1| (Z74792) CCAAT transcription binding factor, gamma subunit [Homo
sapiens]
Length = 335
Score = 52.0 bits (123), Expect = 3e-06
Identities = 29/81 (35%), Positives = 46/81 (55%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKII D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIIKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>sp|P79007|PHP5_SCHPO TRANSCRIPTIONAL ACTIVATOR PHP5
pir||T40338 ccaat-binding factor subunit php5p - fission yeast
(Schizosaccharomyces pombe)
gb|AAB88012.1| (U88525) CCAAT-binding factor subunit Php5p [Schizosaccharomyces
pombe]
emb|CAA18291.1| (AL022244) ccaat-binding factor subunit php5p. [Schizosaccharomyces
pombe]
Length = 415
Score = 51.6 bits (122), Expect = 3e-06
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIA--LCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
LPL+R+KK++ D ++ + S A F+ +E+F+ L + AK + RR +Q
Sbjct: 109 LPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAK--KNQRRTLQR 166
Query: 257 KDVASAVAHHDNLEFLEDTVPK---TVPYKHIKAAAKATQARLQGDNSNDQTI------- 406
D+A+AV+ + +FL D + K +A ATQ G + Q
Sbjct: 167 SDIANAVSKSEMYDFLIDIISKDNNNSRASSSQAHMSATQVAAMGGMNGLQPFPTQAGLP 226
Query: 407 --NFPVANGAKKPHVNGNSMGASAHLNDDQXHPNSQMELE 520
FP+ G++ P N S S + HP+ +++
Sbjct: 227 NQGFPMPTGSQLPFSNQQSSQPSMQYS---SHPSRMQQMQ 263
>dbj|BAA14051.1| (D89986) HSM-2 [Homo sapiens]
Length = 335
Score = 51.6 bits (122), Expect = 3e-06
Identities = 34/140 (24%), Positives = 60/140 (42%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRA--WIHTENNKRRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSNDQTINFPVANGAKKP 439
D+A A+ D +FL D VP+ +K + + R + F +A
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR----DELKPPKRQEEVRQSVTPAEPVQYYFTLAQQPTAV 155
Query: 440 HVNGNSMGASAHLNDDQXHP 499
V+G G + + P
Sbjct: 156 QVHGQQQGQQTTSSTNTIQP 175
>pir||I59348 CCAAT binding transcription factor CBF subunit C - rat
Length = 334
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>gb|AAG28389.1|AF191744_1 (AF191744) NFY-C variant DS2.8 [Homo sapiens]
Length = 458
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>dbj|BAA91100.1| (AK000346) unnamed protein product [Homo sapiens]
Length = 439
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>gb|AAC50816.1| (U62296) transcription factor NF-YC subunit [Homo sapiens]
Length = 335
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>dbj|BAA12818.1| (D85425) transactivator HSM-1 [Homo sapiens]
Length = 335
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>ref|NP_055038.2| nuclear transcription factor Y, gamma; CCAAT-binding transcription
factor subunit C; transactivator HSM-1; histone H1
transcription factor large subunit 2A [Homo sapiens]
gb|AAC51669.1| (U78774) NFY-C [Homo sapiens]
gb|AAH05003.1|AAH05003 (BC005003) nuclear transcription factor Y, gamma [Homo sapiens]
Length = 335
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>dbj|BAA22216.1| (AB006181) nuclear factor YC [Mus musculus]
Length = 335
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>ref|NP_036998.1| CCAAT binding factor of CBF-C/NFY-C [Rattus norvegicus]
gb|AAA91103.1| (U17607) CCAAT binding transcription factor CBF subunit C [Rattus
norvegicus]
Length = 335
Score = 50.8 bits (120), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>ref|NP_015003.1| Component, along with Hap2p and Hap3p, of CCAAT-binding
transcription factor; Hap5p [Saccharomyces cerevisiae]
sp|Q02516|HAP5_YEAST TRANSCRIPTIONAL ACTIVATOR HAP5
pir||S67270 CCAAT-binding factor chain HAP5 - yeast (Saccharomyces cerevisiae)
emb|CAA99687.1| (Z75266) ORF YOR358w [Saccharomyces cerevisiae]
gb|AAC49610.1| (U19932) Hap5p [Saccharomyces cerevisiae]
Length = 242
Score = 50.1 bits (118), Expect = 1e-05
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+ LP +R++K++ D ++ + S A + A E+F+ L + A +R RR +Q
Sbjct: 158 HSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVA--ERNKRRTLQK 215
Query: 257 KDVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 216 ADIAEALQKSDMFDFLIDVVPR 237
>prf||2105237A CCAAT-binding factor [Saccharomyces cerevisiae]
Length = 216
Score = 50.1 bits (118), Expect = 1e-05
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+ LP +R++K++ D ++ + S A + A E+F+ L + A +R RR +Q
Sbjct: 132 HSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVA--ERNKRRTLQK 189
Query: 257 KDVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 190 ADIAEALQKSDMFDFLIDVVPR 211
>gb|AAC82337.1| (AF041205) nuclear Y/CCAAT-box binding factor C subunit NF-YC
[Xenopus laevis]
Length = 330
Score = 50.1 bits (118), Expect = 1e-05
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKD 262
LPL+R+KKI+ D ++ + S A + AA++F+ L + + D K RR +Q D
Sbjct: 41 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTE-DNK-RRTLQRND 98
Query: 263 VASAVAHHDNLEFLEDTVPK 322
+A A+ D +FL D VP+
Sbjct: 99 IAMAITKFDQFDFLIDIVPR 118
>ref|NP_012470.1| Yjl065cp [Saccharomyces cerevisiae]
sp|P40366|YJG5_YEAST HYPOTHETICAL 18.8 KD PROTEIN IN SMC3-MRPL8 INTERGENIC REGION
pir||S50808 hypothetical protein YJL065c - yeast (Saccharomyces cerevisiae)
emb|CAA84059.1| (Z34288) 29.1% identity in 151 aa overlap with DNA polymerase
epsilon subunit c from S. cerevisiae [Saccharomyces
cerevisiae]
emb|CAA89355.1| (Z49340) ORF YJL065c [Saccharomyces cerevisiae]
Length = 167
Score = 49.7 bits (117), Expect = 1e-05
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Frame = +2
Query: 65 PTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEES-HKQAKLDRK-- 235
P +LP+ +V++I DPE S++A A E FVQ L ES H+Q + ++
Sbjct: 14 PLCSPKLPVEKVQRIAKNDPEYMDTSDDAFVATAFATEFFVQVLTHESLHRQQQQQQQQV 73
Query: 236 ----PRRNIQYKDVASAVAHHD--NLEFLEDTVPKTVPYKHIKAAAKATQARLQGD--NS 391
+ Y D+++A+ H +L+FL D +P T K+++ + + R
Sbjct: 74 PPLPDELTLSYDDISAAIVHSSDGHLQFLNDVIPTT---KNLRLLVEENRVRYTTSVMPP 130
Query: 392 NDQTINFPVANGAKKPHV 445
N+ + V + A KP++
Sbjct: 131 NEVYSAYVVNDTAPKPNI 148
>ref|NP_032718.1| nuclear transcription factor-Y gamma [Mus musculus]
gb|AAC52892.1| (U62297) transcription factor NF-YC subunit [Mus musculus]
Length = 335
Score = 48.9 bits (115), Expect = 2e-05
Identities = 25/81 (30%), Positives = 44/81 (53%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+LPL+R+KKI+ D ++ + S A + A++F+ L + + + RR +Q
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKGAQIFITELTLRA--WIRTEDNKRRPLQRN 99
Query: 260 DVASAVAHHDNLEFLEDTVPK 322
D+A A+ D +FL D VP+
Sbjct: 100 DIAMAITKFDQFDFLIDIVPR 120
>pir||T32269 hypothetical protein F23F1.1 - Caenorhabditis elegans
Length = 643
Score = 48.5 bits (114), Expect = 3e-05
Identities = 32/101 (31%), Positives = 54/101 (52%), Gaps = 3/101 (2%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIA--LCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+P++RVKKI+ D ++ + +++A + AAE F++ + + R RR +Q
Sbjct: 110 VPMARVKKIMRIDDDVRNFMIASDAPIFMAQAAEFFIEEMTAMGWQYVSEAR--RRILQK 167
Query: 257 KDVASAVAHHDNLEFLEDTV-PKTVPYKHIKAAAKATQARLQGD 385
D+ASAV D +FL D + PKTVP ++ QG+
Sbjct: 168 ADIASAVQKSDQFDFLIDFLPPKTVPTTSTNGPGHMSEDSFQGE 211
>dbj|BAB09134.1| (AB025619) contains similarity to transcription
factor~gene_id:MBA10.4 [Arabidopsis thaliana]
Length = 186
Score = 48.1 bits (113), Expect = 4e-05
Identities = 27/82 (32%), Positives = 46/82 (55%)
Frame = +2
Query: 77 NQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
++ P+SR+K+I+ DP++++ + A +++ A EMFV L S A+ R I+
Sbjct: 35 HEFPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQ--ESNRLTIRK 92
Query: 257 KDVASAVAHHDNLEFLEDTVPK 322
DV + V+ +FL D VPK
Sbjct: 93 SDVDAVVSQTVIFDFLRDDVPK 114
>dbj|BAB10588.1| (AB017070) gene_id:MNL12.7~unknown protein [Arabidopsis thaliana]
Length = 130
Score = 47.4 bits (111), Expect = 6e-05
Identities = 29/92 (31%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYK 259
+ P+ RVKKI+ D +I ++ A VIT + E+F+ LAE+S ++ N+ +
Sbjct: 11 EFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEKKRKTVNLDHL 70
Query: 260 DVASAVAHHDNLEFLEDTVP-KTVPYKHIKAAA 355
+A H +FL D++P P KH K+ +
Sbjct: 71 RIA-VKRHQPTSDFLLDSLPLPAQPVKHTKSVS 102
>gb|AAK68346.1|AF024493_1 (AF024493) Hypothetical protein F23F1.1 [Caenorhabditis elegans]
Length = 232
Score = 47.0 bits (110), Expect = 8e-05
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = +2
Query: 83 LPLSRVKKIIAQDPEIA--LCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQY 256
+P++RVKKI+ D ++ + +++A + AAE F++ + + R RR +Q
Sbjct: 110 VPMARVKKIMRIDDDVRNFMIASDAPIFMAQAAEFFIEEMTAMGWQYVSEAR--RRILQK 167
Query: 257 KDVASAVAHHDNLEFLEDTV-PKTVPYKHIKAAAKATQARLQGDN 388
D+ASAV D +FL D + PKTVP ++ Q N
Sbjct: 168 ADIASAVQKSDQFDFLIDFLPPKTVPTTSTNGPGHMSEDSFQDPN 212
>dbj|BAB11281.1| (AB005247) gene_id:MXA21.21~unknown protein [Arabidopsis thaliana]
Length = 226
Score = 44.7 bits (104), Expect = 4e-04
Identities = 29/83 (34%), Positives = 43/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 71 GQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEES--HKQAKLDRKPRR 244
GQ LPLSRV+KI+ DPE+ S + + + A E F+ + + H Q+ R
Sbjct: 64 GQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQS----CTRE 119
Query: 245 NIQYKDVASAVAHHDNLEFLEDTVP 319
I+ D+ AV + +FL D VP
Sbjct: 120 TIRRCDIFQAVKNSGTYDFLIDRVP 144
>dbj|BAB09132.1| (AB025619) contains similarity to transcription factor
Hap5a~gene_id:MBA10.2 [Arabidopsis thaliana]
Length = 212
Score = 38.9 bits (89), Expect = 0.023
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +2
Query: 86 PLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESH----KQAKLDRKPRRNIQ 253
PL+R+KKI+ +PE+ + + A +I+ A EM + L S + + K +
Sbjct: 65 PLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRSDTLT 124
Query: 254 YKDVASAVAHHDNLEFLEDTVPK 322
D+++A FL D VP+
Sbjct: 125 RSDISAATTRSFKFTFLGDVVPR 147
>emb|CAA74054.1| (Y13726) Transcription factor [Arabidopsis thaliana]
Length = 155
Score = 37.4 bits (85), Expect = 0.067
Identities = 20/66 (30%), Positives = 35/66 (52%)
Frame = +2
Query: 125 EIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKDVASAVAHHDNLEFL 304
++ + S A + A E+F+ L S A+ ++ RR +Q D+A+A+ D +FL
Sbjct: 1 DVRMISAEAPILFAKACELFILELTIRSWLHAEENK--RRTLQKNDIAAAITRTDIFDFL 58
Query: 305 EDTVPK 322
D VP+
Sbjct: 59 VDIVPR 64
>pir||S70618 transcription regulator NC2 alpha chain - human
emb|CAA65358.1| (X96506) alpha subunit; forms heterodimer with NC2 alpha/Dr1 [Homo
sapiens]
Length = 205
Score = 36.2 bits (82), Expect = 0.15
Identities = 31/156 (19%), Positives = 62/156 (38%)
Frame = +2
Query: 53 PRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDR 232
P K+ + P +R+KKI+ D EI + +I+ A E+F++ L +++ + +
Sbjct: 2 PSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQ--S 59
Query: 233 KPRRNIQYKDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSNDQTINF 412
+ + + + + +FL+D V A+ +QGD ++
Sbjct: 60 RNAKTMTTSHLKQCIELEQQFDFLKDLV--------------ASVPDMQGDGEDNHMDGD 105
Query: 413 PVANGAKKPHVNGNSMGASAHLNDDQXHPNSQMELE 520
A +KP G G + D+ + E E
Sbjct: 106 KGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQE 141
>ref|NP_009836.1| Ybr277cp [Saccharomyces cerevisiae]
sp|P38350|YB9U_YEAST VERY HYPOTHETICAL 14.7 KD PROTEIN IN RIF1-DPB3 INTERGENIC REGION
pir||S44539 probable membrane protein YBR277c - yeast (Saccharomyces
cerevisiae)
emb|CAA53640.1| (X76053) YBR2014-ORF [Saccharomyces cerevisiae]
emb|CAA85241.1| (Z36146) ORF YBR277c [Saccharomyces cerevisiae]
prf||2206494C ORF YBR2014 [Saccharomyces cerevisiae]
Length = 133
Score = 36.2 bits (82), Expect = 0.15
Identities = 31/75 (41%), Positives = 39/75 (51%), Gaps = 4/75 (5%)
Frame = -1
Query: 309 SSRNSRLS*CATAEATSLYWMFRRGL----RSSLACLCDSSARCWTNISAARVITKAALL 142
SSRN +LS +T +S+ + R L S A DSS R TN SAA + A L
Sbjct: 20 SSRNLKLSLFSTH--SSIEFRLNRRLVFPFEFSCAKTSDSSTRFCTNNSAANAVADIATL 77
Query: 141 EQRAISGSCAIIFLTLESG 85
+ SGS IF TL+ G
Sbjct: 78 DVITYSGSHLAIFFTLDIG 96
>gb|AAH02090.1|AAH02090 (BC002090) Similar to DR1-associated protein 1 (negative cofactor 2
alpha) [Mus musculus]
dbj|BAB26737.1| (AK010152) putative [Mus musculus]
Length = 205
Score = 35.8 bits (81), Expect = 0.19
Identities = 30/156 (19%), Positives = 62/156 (39%)
Frame = +2
Query: 53 PRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDR 232
P K+ + P +R+KKI+ D EI + +I+ A E+F++ L +++ + +
Sbjct: 2 PSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQ--S 59
Query: 233 KPRRNIQYKDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSNDQTINF 412
+ + + + + +FL+D V A+ +QGD ++
Sbjct: 60 RNAKTMTTSHLKQCIELEQQFDFLKDLV--------------ASVPDMQGDGEDNHVDGD 105
Query: 413 PVANGAKKPHVNGNSMGASAHLNDDQXHPNSQMELE 520
+KP +G G + D+ + E E
Sbjct: 106 KGPRRGRKPGSSGRKNGGTGSKGKDKKLSGTDSEQE 141
>ref|NP_015236.1| serum response factor-like protein; Rlm1p [Saccharomyces
cerevisiae]
sp|Q12224|RLM1_YEAST TRANSCRIPTION FACTOR RLM1
pir||S61977 transcription factor RLM1 - yeast (Saccharomyces cerevisiae)
dbj|BAA09658.1| (D63340) Rlm1 [Saccharomyces cerevisiae]
gb|AAB68210.1| (U43281) Rlm1p,Lpg19p [Saccharomyces cerevisiae]
Length = 676
Score = 34.7 bits (78), Expect = 0.43
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +2
Query: 302 LEDTVPKTVPYKHIKAAAKATQARLQGDNSNDQTINFPVANGAKKPHVNGNSMGASAHLN 481
LED++ +TV + +A + R+ +N + + + A NGNSMG+S +
Sbjct: 304 LEDSIQQTVKARRKLSARPVLRVRIPNNNFSSNSAIPSEPSSASSTSANGNSMGSSQIMK 363
Query: 482 DDQXHPNSQMELEVRQASG 538
+++ +S++ ASG
Sbjct: 364 ENKTSRSSKISPLSASASG 382
>ref|NP_041761.1| early protein [Human papillomavirus type 15]
sp|P36784|VE2_HPV15 REGULATORY PROTEIN E2
pir||S36476 E2 protein - human papillomavirus type 15
emb|CAA52509.1| (X74468) early protein [Human papillomavirus type 15]
Length = 382
Score = 33.9 bits (76), Expect = 0.74
Identities = 31/104 (29%), Positives = 49/104 (46%), Gaps = 9/104 (8%)
Frame = +1
Query: 187 PASGRRITQASQARPQAPSKHPIQGCCLCCRTS**PRV-SRRHRAKDGS-------LQAH 342
PA+G T A P++P+ + + R PR +RR+ K+ S Q
Sbjct: 129 PAAGEGATSIDSA-PESPANRQLSSTSVSSRKRTPPRTEARRYNRKESSPTTTTTRRQKR 187
Query: 343 QGRRQGDTSTSSR**QQ-RPDYQLSCGERR*EASRQRQLNGCFRASQRRPRXP 498
QG+RQ DT+ SR + R + +RR SR+ ++ + R R P
Sbjct: 188 QGQRQEDTARRSRSTSRGRQEISRGGNQRRRRRSRETSISPAWGRGGRSRRGP 240
>emb|CAB86690.1| (AL163492) hypoothetical protein L787.06 [Leishmania major]
Length = 2656
Score = 33.9 bits (76), Expect = 0.74
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 46 YSSSQGAYRTKPTSALKSQEDYCTRSRDRPLLQQCSFRDNSRCRDVCPASGRRITQASQA 225
+ S+ ++++ S L++ E C R+ + + +C F R R P+ ++ +AS+A
Sbjct: 2272 WQSAHHQHQSRKLSPLQAHEMNCERNSRKSVSPRCGFGAQRRQRHTSPSPYEQVPKASRA 2331
Query: 226 R--PQAPSKHP 252
R P+ HP
Sbjct: 2332 RDGPRKTPSHP 2342
>pir||T18597 hypothetical protein AC3.5 - Caenorhabditis elegans
emb|CAA94872.1| (Z71177) contains similarity to Pfam domain: PF01433 (Peptidase
family M1), Score=-13.2, E-value=1e-10, N=1~cDNA EST
EMBL:M89328 comes from this gene~cDNA EST yk11f4.3 comes
from this gene~cDNA EST yk2h5.3 comes from this
gene~cDNA EST yk2h5.5 comes fr>
Length = 1071
Score = 33.9 bits (76), Expect = 0.74
Identities = 39/174 (22%), Positives = 64/174 (36%)
Frame = +2
Query: 5 ASDPSTTMPYNTTAIPPRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMF 184
A +P T P PP +P Q Q P + KK IA P A+C A + A
Sbjct: 41 AKEPLQTQPQEA---PPAPKPKVQKQKPPVKPKKRIACSPGSAICLFLLAVAAIIFAAFL 97
Query: 185 VQHLAEESHKQAKLDRKPRRNIQYKDVASAVAHHDNLEFLEDTVPKTVPYKHIKAAAKAT 364
+L +++++ + K+ + H ++ ED IK K
Sbjct: 98 GHYLTKQNYEMMQFKSANESMTTCKNFTRSHKKHQDIVNEEDADENA----SIKQPTKEE 153
Query: 365 QARLQGDNSNDQTINFPVANGAKKPHVNGNSMGASAHLNDDQXHPNSQMELEVR 526
A N Q + + V + P V GN AH+ + P +++ L +
Sbjct: 154 LAL----PKNVQPVWYDV---SLSPKVGGNGTMGLAHVKLNIEEPTNKIVLNAK 200
>pir||S53348 nuclear fusion protein BIK1 - yeast (Saccharomyces cerevisiae)
(strain carlsbergensis) (fragment)
gb|AAA21152.1| (U13062) BIK1 homolog [Saccharomyces bayanus]
Length = 347
Score = 33.1 bits (74), Expect = 1.3
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Frame = +2
Query: 383 DNSNDQT-INFPVANGAKKPHVNGNSMGAS-AHLNDDQXHPNSQMELEVRQA 532
DN +D+ I+ V++ K PH NGN AS +H+ND H ++++ +E+R+A
Sbjct: 59 DNGDDRMEIDSIVSSERKTPHNNGNDWKASNSHVND---HNSNEVTIELREA 107
>ref|XP_010698.2| nuclear transcription factor Y, gamma [Homo sapiens]
Length = 335
Score = 33.1 bits (74), Expect = 1.3
Identities = 14/39 (35%), Positives = 25/39 (63%)
Frame = +2
Query: 80 QLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHL 196
+LPL+R+KKI+ D ++ + S A + AA++F+ L
Sbjct: 42 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITEL 80
>gb|AAG51032.1|AC069474_31 (AC069474) unknown protein; 69004-67516 [Arabidopsis thaliana]
Length = 297
Score = 32.3 bits (72), Expect = 2.1
Identities = 24/116 (20%), Positives = 52/116 (44%)
Frame = +2
Query: 92 SRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKDVAS 271
+R+KKI+ D ++ + +++ + E+F+Q L + ++ + L+R + + +
Sbjct: 16 ARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTY-EITLER-GAKTVSSLHLKH 73
Query: 272 AVAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSNDQTINFPVANGAKKP 439
V ++ +FL + V K Y H QG D T++ + +KP
Sbjct: 74 CVERYNVFDFLREVVSKVPDYGH-----------SQGQGHGDVTMDDRSISKRRKP 118
>ref|NP_006433.1| DR1-associated protein 1 (negative cofactor 2 alpha) [Homo sapiens]
gb|AAB02192.1| (U41843) Dr1-associated corepressor [Homo sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 2.8
Identities = 28/142 (19%), Positives = 56/142 (38%)
Frame = +2
Query: 95 RVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDRKPRRNIQYKDVASA 274
R+KKI+ D EI + +I+ A E+F++ L +++ + + + + + +
Sbjct: 4 RIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQ--SRNAKTMTTSHLKQC 61
Query: 275 VAHHDNLEFLEDTVPKTVPYKHIKAAAKATQARLQGDNSNDQTINFPVANGAKKPHVNGN 454
+ +FL+D V A+ +QGD ++ A +KP G
Sbjct: 62 IELEQQFDFLKDLV--------------ASVPDMQGDGEDNHMDGDKGARRGRKPGSGGR 107
Query: 455 SMGASAHLNDDQXHPNSQMELE 520
G + D+ + E E
Sbjct: 108 KNGGMGTKSKDKKLSGTDSEQE 129
>pir||H83276 probable lipase PA2949 [imported] - Pseudomonas aeruginosa (strain
PAO1)
gb|AAF89744.1| (AF170828) esterase [Pseudomonas aeruginosa]
gb|AAG06337.1|AE004721_5 (AE004721) probable lipase [Pseudomonas aeruginosa]
Length = 315
Score = 32.0 bits (71), Expect = 2.8
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +2
Query: 350 AAKATQARLQGDNSNDQTINFPVANGAKKPHVNGNSMGASAHLNDDQXHPNSQMELEVRQ 529
++K QA ++ NF A G ++ H+ GNSMG HP + L +
Sbjct: 102 SSKPQQASYDVGTQAERVANFAAAIGVRRLHLAGNSMGGHIAALYAARHPEQVLSLALID 161
Query: 530 ASGV 541
+GV
Sbjct: 162 NAGV 165
>ref|NP_012471.1| Yjl064wp [Saccharomyces cerevisiae]
sp|P47038|YJG4_YEAST HYPOTHETICAL 13.9 KD PROTEIN IN SMC3-MRPL8 INTERGENIC REGION
pir||S50807 probable membrane protein YJL064w - yeast (Saccharomyces
cerevisiae)
emb|CAA84058.1| (Z34288) HRC131 [Saccharomyces cerevisiae]
emb|CAA89356.1| (Z49340) ORF YJL064w [Saccharomyces cerevisiae]
Length = 131
Score = 32.0 bits (71), Expect = 2.8
Identities = 23/61 (37%), Positives = 27/61 (43%), Gaps = 1/61 (1%)
Frame = -1
Query: 216 CLC-DSSARCWTNISAARVITKAALLEQRAISGSCAIIFLTLESGSWFCPVGSLRGGIAV 40
CLC DS WT S A + A E SGS I T +G+ +G RG AV
Sbjct: 64 CLCRDSCVSTWTKNSVANAVATNASSEVSIYSGSFLAILCTFSTGN----LGEHRGADAV 119
Query: 39 VL 34
L
Sbjct: 120 SL 121
>gb|AAG15389.1| (AF302258) NC2alpha [Drosophila melanogaster]
Length = 341
Score = 31.6 bits (70), Expect = 3.7
Identities = 18/88 (20%), Positives = 39/88 (43%)
Frame = +2
Query: 53 PRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFVQHLAEESHKQAKLDR 232
P K+ + P R+KKI+ D EI + +I+ E+FV+ L ++ + +
Sbjct: 2 PSKKKKYNARFPAGRIKKIMQSDEEIGKVAQAVPVIISRTLELFVESLLTKTLRIT--NA 59
Query: 233 KPRRNIQYKDVASAVAHHDNLEFLEDTV 316
+ + + + + +FL++ V
Sbjct: 60 RNAKTLSPSHMRQCIVSEKRFDFLKELV 87
>gb|AAK31540.1| (AF040646) Similar to sugar transporter; coded for by C. elegans
cDNA yk70c7.5; coded for by C. elegans cDNA yk119e1.5;
coded for by C. elegans cDNA yk173a2.5 [Caenorhabditis
elegans]
Length = 510
Score = 30.8 bits (68), Expect = 6.2
Identities = 21/63 (33%), Positives = 31/63 (48%)
Frame = +2
Query: 8 SDPSTTMPYNTTAIPPRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFV 187
SD S T + ++ P T P + +KII D ++ C +AFVITLA+ F
Sbjct: 7 SDTSATASLSDSSKSPSSYST-----PGTTTQKIIFPDGKLTKCLAFSAFVITLASFQFG 61
Query: 188 QHL 196
H+
Sbjct: 62 YHI 64
>pir||T32816 hypothetical protein H17B01.1b - Caenorhabditis elegans (fragment)
Length = 222
Score = 30.8 bits (68), Expect = 6.2
Identities = 21/63 (33%), Positives = 31/63 (48%)
Frame = +2
Query: 8 SDPSTTMPYNTTAIPPRKEPTGQNQLPLSRVKKIIAQDPEIALCSNNAAFVITLAAEMFV 187
SD S T + ++ P T P + +KII D ++ C +AFVITLA+ F
Sbjct: 7 SDTSATASLSDSSKSPSSYST-----PGTTTQKIIFPDGKLTKCLAFSAFVITLASFQFG 61
Query: 188 QHL 196
H+
Sbjct: 62 YHI 64
>ref|NP_041368.1| regulatory protein [Human papillomavirus type 5]
sp|P06921|VE2_HPV05 REGULATORY PROTEIN E2
gb|AAA46986.1| (M17463) regulatory protein [Human papillomavirus type 5]
Length = 514
Score = 30.4 bits (67), Expect = 8.1
Identities = 35/110 (31%), Positives = 47/110 (41%), Gaps = 7/110 (6%)
Frame = +1
Query: 49 SSSQGAYRTKPTSALKSQEDYC---TRSRDRPLLQQCSFRDNSRCRDVCPASGRRITQAS 219
S S+ R++ S KSQ TRSR L + + SR R P + RR S
Sbjct: 268 SRSRHRSRSRSRSRSKSQTHTTRSTTRSRSTSLTKTRALTSRSRSRGRSPTTCRRGGGRS 327
Query: 220 QAR----PQAPSKHPIQGCCLCCRTS**PRVSRRHRAKDGSLQAHQGRRQGDTSTSS 378
R P S Q S R +R R G + +GRR+G +S+SS
Sbjct: 328 PRRRSRSPSTSSSCTTQRSQRARAESSTTRGARGSRGSRGGSRGGRGRRRGRSSSSS 384
>ref|NP_043374.1| transforming protein E6 [Human papillomavirus type 28]
sp|P50802|VE6_HPV28 E6 PROTEIN
gb|AAA79422.1| (U31783) transforming protein E6 [Human papillomavirus type 28]
Length = 146
Score = 30.4 bits (67), Expect = 8.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 335 CREPSLARCLRETRGYHDVRQQRQHPCIGCFDGACGLAWLACVILLP 195
C +P ++E + H ++R H G + G+C WL C + +P
Sbjct: 103 CHKP----LVKEEKDRHRNERRRLHCIAGYWRGSCQYCWLRCTVRIP 145
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,200,573
Number of Sequences: 705144
Number of extensions: 4621803
Number of successful extensions: 17214
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 16323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17142
length of database: 222,175,239
effective HSP length: 111
effective length of database: 143,904,255
effective search space used: 10505010615
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)