Score E
Sequences producing significant alignments: (bits) Value
emb|CAC27452.1| (AJ297887) DigA protein [Aspergillus nidulans] 176 7e-44
dbj|BAA95999.1| (AB040908) KIAA1475 protein [Homo sapiens] 97 5e-20
gb|AAG34679.1|AF308802_1 (AF308802) vacuolar protein sortin... 97 5e-20
gb|AAF79641.1|AC025416_15 (AC025416) F5O11.22 [Arabidopsis ... 74 4e-13
gb|AAF88074.1|AC025417_2 (AC025417) T12C24.2 [Arabidopsis t... 74 4e-13
ref|NP_013249.1| vacuolar membrane protein; Pep3p [Saccharo... 68 3e-11
gb|AAF45652.1| (AE003421) dor gene product [Drosophila mela... 65 2e-10
pir||S54252 deep orange protein - fruit fly (Drosophila mel... 65 2e-10
sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN >gi|2832850|emb|CAA... 64 5e-10
pir||T34481 hypothetical protein W06B4.3 - Caenorhabditis e... 60 5e-09
gb|AAC46819.2| (U23522) similar to vacuolar membrane protei... 60 5e-09
pir||T41607 probable vacuolar membrane protein - fission ye... 57 3e-08
emb|CAB91628.1| (AJ289080) Vps18 protein [Candida albicans] 45 2e-04
gb|AAK40566.1| (AE006659) DNA-directed RNA polymerase, subu... 35 0.18
emb|CAB95611.1| (AL359782) hypothetical protein, CHR1.386 [... 34 0.32
gb|AAF54693.1| (AE003692) CG6923 gene product [Drosophila m... 33 0.54
dbj|BAB08428.1| (AB017067) gb|AAF32311.1~gene_id:MJC20.5~si... 33 0.70
ref|NP_055463.1| KIAA0675 gene product [Homo sapiens] >gi|7... 33 0.92
ref|NP_066681.1| similar to ardC gene in pSa(IncW plasmid) ... 33 0.92
dbj|BAB22082.1| (AK002414) putative [Mus musculus] 32 1.2
pir||E72520 hypothetical protein APE2138 - Aeropyrum pernix... 32 1.2
emb|CAA11444.1| (AJ223577) intermediate filament protein C1... 32 1.6
sp|Q10322|DMA1_SCHPO DMA1 PROTEIN >gi|7490447|pir||T37862 d... 32 2.0
ref|NP_111000.1| Uncharacterized conserved protein [Thermop... 32 2.0
gb|AAF58107.2| (AE003809) CG8242 gene product [Drosophila m... 31 2.7
ref|NP_106707.1| antirestriction protein [Mesorhizobium lot... 31 2.7
gb|AAK38349.1| (AY030283) PHD zinc finger transcription fac... 31 3.5
gb|AAH01657.1|AAH01657 (BC001657) Unknown (protein for IMAG... 31 3.5
gb|AAD22654.1|AC007138_18 (AC007138) putative CHP-rich zinc... 30 4.5
pir||T00600 hypothetical protein T8K22.6 - Arabidopsis thal... 30 5.9
pir||T00603 hypothetical protein T8K22.9 - Arabidopsis thal... 30 5.9
dbj|BAB22071.1| (AK002399) putative [Mus musculus] 30 7.8
gb|AAF81249.1|AF267753_1 (AF267753) putative potassium chan... 30 7.8
pir||T03835 vacA protein - slime mold (Dictyostelium discoi... 30 7.8
gb|AAB71964.1| (AC002292) Hypothetical protein [Arabidopsis... 30 7.8
dbj|BAB27445.1| (AK011171) putative [Mus musculus] 30 7.8
pir||A33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain ... 30 7.8
sp|P15350|RPA1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT A'... 30 7.8
>emb|CAC27452.1| (AJ297887) DigA protein [Aspergillus nidulans]
Length = 963
Score = 176 bits (445), Expect = 7e-44
Identities = 85/126 (67%), Positives = 102/126 (80%)
Frame = +2
Query: 17 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAG 196
TA I+ +IAALD RYAIVEPGEKC+TC LP+LSRQFFVFPCQH+FHSDCLGR+VLE AG
Sbjct: 839 TARQIRSEIAALDTRYAIVEPGEKCWTCSLPVLSRQFFVFPCQHAFHSDCLGREVLEGAG 898
Query: 197 VGKSSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAIKRIDEPFITHNDY 376
GK IR+LQ Q+ +G ++ +QRE VV ELD L+A +CILC D AIK+ID+PFIT D
Sbjct: 899 -GKKKYIRDLQSQLNEGALTSSQREEVVKELDGLIAEACILCGDHAIKQIDKPFITATDN 957
Query: 377 VNEWIL 394
V+EW L
Sbjct: 958 VDEWCL 963
>dbj|BAA95999.1| (AB040908) KIAA1475 protein [Homo sapiens]
Length = 986
Score = 96.7 bits (239), Expect = 5e-20
Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 17/133 (12%)
Frame = +2
Query: 17 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAG 196
+A I+ D+ L RY VEP +KC TC PLL+R F++F C H FH+DCL + V
Sbjct: 842 SAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLP 901
Query: 197 VGKSSRIRELQMQI------QKG-----------LVSGTQRETVVAELDALVASSCILCS 325
K +R+ ELQ ++ KG +G RE + A+LD LVA+ C+ C
Sbjct: 902 AYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCG 961
Query: 326 DLAIKRIDEPFITHNDYVNEWIL*EEDRSW 415
+L I+ ID PFI Y EE SW
Sbjct: 962 ELMIRSIDRPFIDPQRYE------EEQLSW 985
>gb|AAG34679.1|AF308802_1 (AF308802) vacuolar protein sorting protein 18 [Homo sapiens]
Length = 973
Score = 96.7 bits (239), Expect = 5e-20
Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 17/133 (12%)
Frame = +2
Query: 17 TATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAG 196
+A I+ D+ L RY VEP +KC TC PLL+R F++F C H FH+DCL + V
Sbjct: 829 SAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLP 888
Query: 197 VGKSSRIRELQMQI------QKG-----------LVSGTQRETVVAELDALVASSCILCS 325
K +R+ ELQ ++ KG +G RE + A+LD LVA+ C+ C
Sbjct: 889 AYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCG 948
Query: 326 DLAIKRIDEPFITHNDYVNEWIL*EEDRSW 415
+L I+ ID PFI Y EE SW
Sbjct: 949 ELMIRSIDRPFIDPQRYE------EEQLSW 972
>gb|AAF79641.1|AC025416_15 (AC025416) F5O11.22 [Arabidopsis thaliana]
Length = 1063
Score = 73.9 bits (180), Expect = 4e-13
Identities = 51/128 (39%), Positives = 71/128 (54%), Gaps = 35/128 (27%)
Frame = +2
Query: 20 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQ-----------------FFVFPCQH 148
A NI+ DI+AL RYA+++ E+C C +L F+VFPC H
Sbjct: 888 ADNIRNDISALTQRYAVIDRDEECGVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGH 947
Query: 149 SFHSDCLGRKVLEQAGVGKSSRIRELQMQI----------------QKGLVSGTQRETVV 280
SFH+ CL V A ++ I +LQ Q+ + + S T + +
Sbjct: 948 SFHAQCLITHVTSCAHEEQAEHILDLQKQLTLLGSETRRDINGNRSDEPITSTTTADKLR 1007
Query: 281 AELDALVASSCILCSDLAIKRIDEPFITHND--YVNEWIL*EE 403
+ELD +AS C C +L I I PFI D Y W L E
Sbjct: 1008 SELDDAIASECPFCGELMINEITLPFIKPEDSQYSTSWDLRSE 1050
>gb|AAF88074.1|AC025417_2 (AC025417) T12C24.2 [Arabidopsis thaliana]
Length = 1010
Score = 73.9 bits (180), Expect = 4e-13
Identities = 51/128 (39%), Positives = 71/128 (54%), Gaps = 35/128 (27%)
Frame = +2
Query: 20 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQ-----------------FFVFPCQH 148
A NI+ DI+AL RYA+++ E+C C +L F+VFPC H
Sbjct: 835 ADNIRNDISALTQRYAVIDRDEECGVCKRKILMMSGDFRMAQGYSSAGPLAPFYVFPCGH 894
Query: 149 SFHSDCLGRKVLEQAGVGKSSRIRELQMQI----------------QKGLVSGTQRETVV 280
SFH+ CL V A ++ I +LQ Q+ + + S T + +
Sbjct: 895 SFHAQCLITHVTSCAHEEQAEHILDLQKQLTLLGSETRRDINGNRSDEPITSTTTADKLR 954
Query: 281 AELDALVASSCILCSDLAIKRIDEPFITHND--YVNEWIL*EE 403
+ELD +AS C C +L I I PFI D Y W L E
Sbjct: 955 SELDDAIASECPFCGELMINEITLPFIKPEDSQYSTSWDLRSE 997
>ref|NP_013249.1| vacuolar membrane protein; Pep3p [Saccharomyces cerevisiae]
sp|P27801|PEP3_YEAST VACUOLAR MEMBRANE PROTEIN PEP3
pir||A41943 vacuolar membrane protein PEP3 - yeast (Saccharomyces cerevisiae)
gb|AAA34852.1| (M65144) PEP3 [Saccharomyces cerevisiae]
gb|AAB82382.1| (U53879) Pep3p: Vacuolar membrane protein [Saccharomyces cerevisiae]
emb|CAA97720.1| (Z73320) ORF YLR148w [Saccharomyces cerevisiae]
Length = 918
Score = 67.8 bits (164), Expect = 3e-11
Identities = 36/120 (30%), Positives = 63/120 (52%)
Frame = +2
Query: 29 IKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKS 208
I +I+ + Y I+EPG+ C CG L ++F VFPC H FH +C+ R +L +
Sbjct: 806 INTEISKFNEIYRILEPGKSCDECGKFLQIKKFIVFPCGHCFHWNCIIRVIL-------N 858
Query: 209 SRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAIKRIDEPFITHNDYVNEW 388
S L+ + + L + ++ + +L+ ++ C LCSD+ I +ID+P + +W
Sbjct: 859 SNDYNLRQKTENFLKAKSKHN--LNDLENIIVEKCGLCSDININKIDQPISIDETELAKW 916
>gb|AAF45652.1| (AE003421) dor gene product [Drosophila melanogaster]
Length = 1002
Score = 64.7 bits (156), Expect = 2e-10
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Frame = +2
Query: 8 TRPTATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLE 187
T + ++ L VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 858 TTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVP 917
Query: 188 QAGVGKSSRIRELQMQI----------QKGLVSGTQ-------RETVVAELDALVASSCI 316
+ R+ L+ Q+ Q G +S Q R + E++ ++A+ C+
Sbjct: 918 LLTKEQCRRLGTLKQQLEAEVQTQAQPQSGALSKQQAMELQRKRAALKTEIEDILAADCL 977
Query: 317 LCSDLAIKRIDEPFITHNDYVN-EW 388
C L I ID+PF+ + VN EW
Sbjct: 978 FCG-LLISTIDQPFVDDWEQVNVEW 1001
>pir||S54252 deep orange protein - fruit fly (Drosophila melanogaster)
emb|CAA60382.1| (X86683) deep orange (dor) [Drosophila melanogaster]
Length = 1002
Score = 64.7 bits (156), Expect = 2e-10
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Frame = +2
Query: 8 TRPTATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLE 187
T + ++ L VE + C C + LL + FF+F C H FHSDCL + V+
Sbjct: 858 TTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVP 917
Query: 188 QAGVGKSSRIRELQMQI----------QKGLVSGTQ-------RETVVAELDALVASSCI 316
+ R+ L+ Q+ Q G +S Q R + E++ ++A+ C+
Sbjct: 918 LLTKEQCRRLGTLKQQLEAEVQTQAQPQSGALSKQQAMELQRKRAALKTEIEDILAADCL 977
Query: 317 LCSDLAIKRIDEPFITHNDYVN-EW 388
C L I ID+PF+ + VN EW
Sbjct: 978 FCG-LLISTIDQPFVDDWEQVNVEW 1001
>sp|Q24314|DOR_DROME DEEP ORANGE PROTEIN
emb|CAA16809.1| (AL021726) EG:171E4.1 [Drosophila melanogaster]
Length = 1002
Score = 63.5 bits (153), Expect = 5e-10
Identities = 40/106 (37%), Positives = 61/106 (56%), Gaps = 18/106 (16%)
Frame = +2
Query: 71 VEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKSSRIRELQMQI---- 238
VE + C C + LL + FF+F C H FHSDCL + V+ + R+ L+ Q+
Sbjct: 879 VESQDTCEICEMMLLVKPFFIFICGHKFHSDCLEKHVVPLLTKEQCRRLGTLKQQLEAEV 938
Query: 239 ------QKGLVSGTQ-------RETVVAELDALVASSCILCSDLAIKRIDEPFITHNDYV 379
Q G +S Q R + E++ ++A+ C+ C L I ID+PF+ + V
Sbjct: 939 QTQAQPQSGALSKQQAMELQRKRAALKTEIEDILAADCLFCG-LLISTIDQPFVDDWEQV 997
Query: 380 N-EW 388
N EW
Sbjct: 998 NVEW 1001
>pir||T34481 hypothetical protein W06B4.3 - Caenorhabditis elegans
Length = 543
Score = 60.1 bits (144), Expect = 5e-09
Identities = 37/125 (29%), Positives = 70/125 (55%), Gaps = 19/125 (15%)
Frame = +2
Query: 20 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGV 199
A+ I+ L +R +V+P + C C P+ R F V C+H FH +CL ++
Sbjct: 400 ASEIRDKQEKLKNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECLEIAMISFLSQ 459
Query: 200 GKSSRIREL---------QMQI------QKGLVSGTQRE-TVVAELDALVASSCILCSDL 331
+ +++ L QM+ QKG + ++ + A + +V + C LC ++
Sbjct: 460 EEVEKMKTLIIDEERVLSQMKAEQLAGNQKGFIEKQEKYLKIAAFISNIVGAECPLCGNI 519
Query: 332 AIKRIDEPFITHNDY---VNEWIL 394
AI +ID+ F++ ++ +N W+L
Sbjct: 520 AISQIDKQFLSDEEFAADLNTWLL 543
>gb|AAC46819.2| (U23522) similar to vacuolar membrane protein PEP3 (SP:PEP3_YEAST,
P27801) [Caenorhabditis elegans]
Length = 1010
Score = 60.1 bits (144), Expect = 5e-09
Identities = 37/125 (29%), Positives = 70/125 (55%), Gaps = 19/125 (15%)
Frame = +2
Query: 20 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGV 199
A+ I+ L +R +V+P + C C P+ R F V C+H FH +CL ++
Sbjct: 867 ASEIRDKQEKLKNRTTVVKPSDVCSHCARPISGRAFNVHSCRHFFHRECLEIAMISFLSQ 926
Query: 200 GKSSRIREL---------QMQI------QKGLVSGTQRE-TVVAELDALVASSCILCSDL 331
+ +++ L QM+ QKG + ++ + A + +V + C LC ++
Sbjct: 927 EEVEKMKTLIIDEERVLSQMKAEQLAGNQKGFIEKQEKYLKIAAFISNIVGAECPLCGNI 986
Query: 332 AIKRIDEPFITHNDY---VNEWIL 394
AI +ID+ F++ ++ +N W+L
Sbjct: 987 AISQIDKQFLSDEEFAADLNTWLL 1010
>pir||T41607 probable vacuolar membrane protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA21292.1| (AL031855) putative vacuolar membrane protein [Schizosaccharomyces
pombe]
Length = 900
Score = 57.4 bits (137), Expect = 3e-08
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 20 ATNIKVDIAALDHRYAIVEPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGV 199
A I+ + + +RY ++EP E C+ C PL S F +FPCQH+FH C+ K + A
Sbjct: 814 AHEIQTNAENMRNRYIVLEPNESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEKTYKLA-- 871
Query: 200 GKSSRIRELQM 232
+ + ++E Q+
Sbjct: 872 SEKNILKECQL 882
>emb|CAB91628.1| (AJ289080) Vps18 protein [Candida albicans]
Length = 810
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 65 AIVEPGEKCYTCGLPLLSRQFFVFP-CQHSFHSDCL 169
AI+EPGE C CG L+ F FP C H+FH +C+
Sbjct: 761 AIIEPGEPCRKCGKLLVQENFVYFPNCHHAFHKECM 796
>gb|AAK40566.1| (AE006659) DNA-directed RNA polymerase, subunit A' (rpoA1)
[Sulfolobus solfataricus]
Length = 880
Score = 35.0 bits (79), Expect = 0.18
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 18/108 (16%)
Frame = +2
Query: 35 VDIAALDHRYAIVEPGEKCYTCG------------LPLLSRQFFVFPCQHSFH---SDC- 166
++ + +D R ++EPG+KC TCG + L+ V +H + + C
Sbjct: 40 IEGSVMDPRLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCR 99
Query: 167 -LGRKVLEQAGVGKSSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCILCSDLAIK- 340
GR + + + K SRI I+K S +R T + A+ A C C++ K
Sbjct: 100 RCGRVKISEDEIEKYSRIYN---AIKKRWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKI 156
Query: 341 RIDEPF 358
++++P+
Sbjct: 157 KLEKPY 162
>emb|CAB95611.1| (AL359782) hypothetical protein, CHR1.386 [Trypanosoma brucei]
Length = 731
Score = 34.3 bits (77), Expect = 0.32
Identities = 20/53 (37%), Positives = 29/53 (53%), Gaps = 7/53 (13%)
Frame = +2
Query: 11 RPTATNIKVDIA----ALDHRYAIVEPGEKC-YTCGLPL--LSRQFFVFPCQHSFHSDCL 169
RP A I+VD+ HR + E +C ++CGL + L PC H+F +CL
Sbjct: 578 RPVAQEIRVDVKNSLLTAMHRLIVAEEATECIFSCGLCMQPLKSPLTCVPCGHTFCEECL 637
>gb|AAF54693.1| (AE003692) CG6923 gene product [Drosophila melanogaster]
Length = 1256
Score = 33.5 bits (75), Expect = 0.54
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Frame = +2
Query: 5 PTRPT--ATNIKVDIAALDHRYAIV-------EPGEKCYTC-GLPLLSRQFFVFPCQHSF 154
P+RP AT ++ L H+Y V E EKC C L + + PC H F
Sbjct: 1150 PSRPNRGATLETIERNTLPHKYRRVRRPSETDEDAEKCAICLNLFEIENEVRRLPCMHLF 1209
Query: 155 HSDCL 169
H+DC+
Sbjct: 1210 HTDCV 1214
>dbj|BAB08428.1| (AB017067) gb|AAF32311.1~gene_id:MJC20.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 565
Score = 33.1 bits (74), Expect = 0.70
Identities = 20/63 (31%), Positives = 35/63 (54%)
Frame = -3
Query: 205 LSDARLLQYLSPQAIRVERVLTGKNKELSTQ*GQSTSITLLTRLHDCVAMVECSNINLDV 26
L+ RLLQ L P+ + R L+GK + +ST + T +T + V++ C+++ L
Sbjct: 458 LNHERLLQVLKPEPREMGRNLSGKAETMSTNVERKTVKVNITEI---VSVTPCADLTLPP 514
Query: 25 GSG 17
G+G
Sbjct: 515 GAG 517
>ref|NP_055463.1| KIAA0675 gene product [Homo sapiens]
pir||T00362 hypothetical protein KIAA0675 - human
dbj|BAA31650.1| (AB014575) KIAA0675 protein [Homo sapiens]
Length = 1208
Score = 32.7 bits (73), Expect = 0.92
Identities = 18/51 (35%), Positives = 22/51 (42%)
Frame = +2
Query: 74 EPGEKCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKSSRIREL 226
E E C C L V PC H FH+ C+ R L Q G + R+ L
Sbjct: 1143 EEEEPCVICHENLSPENLSVLPCAHKFHAQCI-RPWLMQQGTCPTCRLHVL 1192
>ref|NP_066681.1| similar to ardC gene in pSa(IncW plasmid) [Rhizobium rhizogenes]
dbj|BAB16219.1| (AP002086) similar to ardC gene in pSa(IncW plasmid) [Rhizobium
rhizogenes]
Length = 309
Score = 32.7 bits (73), Expect = 0.92
Identities = 17/42 (40%), Positives = 22/42 (51%)
Frame = +2
Query: 266 RETVVAELDALVASSCILCSDLAIKRIDEPFITHNDYVNEWI 391
RE ++AEL SC LC+DL I EP H Y+ W+
Sbjct: 234 REELIAEL-----GSCFLCADLGIAPELEPRPDHASYLQSWL 270
>dbj|BAB22082.1| (AK002414) putative [Mus musculus]
Length = 379
Score = 32.3 bits (72), Expect = 1.2
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 62 YAIVEPG-EKCYTCGLPLLSRQFF-VFPCQHSFHSDCL 169
+++ EPG E C C ++Q+ V PC+H FH DC+
Sbjct: 317 HSLPEPGTETCAVCLDYFCNKQWLRVLPCKHEFHRDCV 354
>pir||E72520 hypothetical protein APE2138 - Aeropyrum pernix (strain K1)
dbj|BAA81149.1| (AP000063) 122aa long hypothetical protein [Aeropyrum pernix]
Length = 122
Score = 32.3 bits (72), Expect = 1.2
Identities = 19/57 (33%), Positives = 28/57 (48%)
Frame = +2
Query: 149 SFHSDCLGRKVLEQAGVGKSSRIRELQMQIQKGLVSGTQRETVVAELDALVASSCIL 319
S S C+G+KV E AGV K S E + + K L + E +V + A + +L
Sbjct: 40 SMLSACIGKKVAENAGVDKVSVSIEAYVNVDKLLEGKEEIEHIVVRIRAPASEEAVL 96
>emb|CAA11444.1| (AJ223577) intermediate filament protein C1 [Branchiostoma
floridae]
Length = 839
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 146 HSFHSDCLGRKVLEQAGVGKSSRIRELQMQIQKGLVSGTQRETVVAELDALVA 304
HS S V E+ G SRI LQ +I L +R+T++A+L A +A
Sbjct: 472 HSVQSSVQSSAVFEKQVSGLESRIGSLQGEIDSKLAIIRERDTMIADLRAQIA 524
>sp|Q10322|DMA1_SCHPO DMA1 PROTEIN
pir||T37862 dma1 protein - fission yeast (Schizosaccharomyces pombe)
emb|CAA93693.1| (Z69795) dma1 protein. [Schizosaccharomyces pombe]
emb|CAA57466.1| (X81883) non-essential gene [Schizosaccharomyces pombe]
Length = 267
Score = 31.6 bits (70), Expect = 2.0
Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Frame = +2
Query: 86 KCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 169
+C C +P+L Q FV PC HS+H C+
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCI 219
>ref|NP_111000.1| Uncharacterized conserved protein [Thermoplasma volcanium]
dbj|BAB59622.1| (AP000992) unknown product [Thermoplasma volcanium]
Length = 100
Score = 31.6 bits (70), Expect = 2.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 86 KCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKSSRIRELQMQIQKGL 250
KCY C P+ + + F F + S H DC + G K +R L + + L
Sbjct: 5 KCYVCEKPVKTGEKFTFTKKGSVHYDCFIADKRNKLGEEKLENLRVLSILLDSNL 59
>gb|AAF58107.2| (AE003809) CG8242 gene product [Drosophila melanogaster]
Length = 422
Score = 31.2 bits (69), Expect = 2.7
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = +2
Query: 86 KCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKS 208
KC+ CG P+ + +V H++HS C +Q G+S
Sbjct: 367 KCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQS 407
>ref|NP_106707.1| antirestriction protein [Mesorhizobium loti]
dbj|BAB52493.1| (AP003008) antirestriction protein [Mesorhizobium loti]
Length = 320
Score = 31.2 bits (69), Expect = 2.7
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 266 RETVVAELDALVASSCILCSDLAIKRIDEPFITHNDYVNEW--IL*EEDRSWWKRA 427
RE +VAE+ A +CS L I EP + H DY+ W +L E++R+ ++ A
Sbjct: 247 REELVAEITA-----AFVCSTLGI----EPTVRHADYIGTWLKVLREDNRAIFRAA 293
>gb|AAK38349.1| (AY030283) PHD zinc finger transcription factor [Homo sapiens]
Length = 704
Score = 30.8 bits (68), Expect = 3.5
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 5/56 (8%)
Frame = +2
Query: 2 RPTRPTATNIKVDIAALDHRYAIVEPGEKCYTCG-----LPLLSRQFFVFPCQHSFHSDC 166
R T N+K LDH + P + C+TC PL+ + C FH DC
Sbjct: 245 RKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDY----CPLLFHMDC 300
Query: 167 L 169
L
Sbjct: 301 L 301
>gb|AAH01657.1|AAH01657 (BC001657) Unknown (protein for IMAGE:3356959) [Homo sapiens]
Length = 487
Score = 30.8 bits (68), Expect = 3.5
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 5/56 (8%)
Frame = +2
Query: 2 RPTRPTATNIKVDIAALDHRYAIVEPGEKCYTCG-----LPLLSRQFFVFPCQHSFHSDC 166
R T N+K LDH + P + C+TC PL+ + C FH DC
Sbjct: 160 RKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDY----CPLLFHMDC 215
Query: 167 L 169
L
Sbjct: 216 L 216
>gb|AAD22654.1|AC007138_18 (AC007138) putative CHP-rich zinc finger protein [Arabidopsis
thaliana]
emb|CAB80685.1| (AL161493) putative CHP-rich zinc finger protein [Arabidopsis
thaliana]
Length = 658
Score = 30.4 bits (67), Expect = 4.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 RPTRPTATNIKVDIAALDHRYAIVEPGEK--CYTCGLPLLSRQFFVFPCQHSFHSDCLG 172
RP + + N+K A DH+ ++ + C CGL + F C H DCLG
Sbjct: 233 RPPQQSLLNLK----AHDHQLTLLPKLDSFTCNACGLKGDRSPYVCFQCGFMIHQDCLG 287
>pir||T00600 hypothetical protein T8K22.6 - Arabidopsis thaliana
gb|AAC18923.1| (AC004136) hypothetical protein [Arabidopsis thaliana]
Length = 627
Score = 30.0 bits (66), Expect = 5.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 74 EPGEKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 169
E G++CY+C + + +F C FH +C+
Sbjct: 114 EEGDECYSCSIQTIGTDYYFCATCDKRFHKECV 146
>pir||T00603 hypothetical protein T8K22.9 - Arabidopsis thaliana
gb|AAC18926.1| (AC004136) hypothetical protein [Arabidopsis thaliana]
Length = 627
Score = 30.0 bits (66), Expect = 5.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 74 EPGEKCYTCGLPLLSRQ-FFVFPCQHSFHSDCL 169
E G++CY+C + + +F C FH +C+
Sbjct: 114 EEGDECYSCSIQTIGTDYYFCATCDKRFHKECV 146
>dbj|BAB22071.1| (AK002399) putative [Mus musculus]
Length = 456
Score = 29.6 bits (65), Expect = 7.8
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 7/77 (9%)
Frame = +2
Query: 77 PGEKCYTCGLPLLSRQFFV-FPCQHSFHSDCLGRKV--LEQAGVGKSSRIRELQMQIQKG 247
P +C C ++ F PC H FH CL R + +EQ + + +E Q + K
Sbjct: 130 PHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQE-LTTQEQEQERQHVVTKQ 188
Query: 248 LVSGTQ----RETVVAELDALVAS 307
G Q RE +V +L +L A+
Sbjct: 189 KAVGVQCPVCREPLVYDLASLKAA 212
>gb|AAF81249.1|AF267753_1 (AF267753) putative potassium channel protein Mkt1p
[Mesembryanthemum crystallinum]
Length = 870
Score = 29.6 bits (65), Expect = 7.8
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Frame = -3
Query: 313 TRRRNESVQFC-----HNRLPLRTTDQALLYLHLKF-PDTR*LSDARLLQYLSPQAIR 158
TRR +++Q NRLP+R DQ L +L LK+ D+ L +L L P+AI+
Sbjct: 306 TRRFRDTIQAASSFGLRNRLPVRLQDQMLAHLCLKYRTDSEGLQQQEVLDSL-PKAIK 362
>pir||T03835 vacA protein - slime mold (Dictyostelium discoideum) (fragment)
gb|AAB69389.1| (AF015565) VacA [Dictyostelium discoideum]
Length = 708
Score = 29.6 bits (65), Expect = 7.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 131 VFPCQHSFHSDCLGR 175
V+ C H+FHS+CLG+
Sbjct: 558 VYQCNHTFHSECLGK 572
>gb|AAB71964.1| (AC002292) Hypothetical protein [Arabidopsis thaliana]
Length = 664
Score = 29.6 bits (65), Expect = 7.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 86 KCYTCGLPLLSRQFFVFPCQHSFHSDCLGRKVLEQAGVGKS 208
KC C L + S F F C+ +FH C+ K ++ G+ KS
Sbjct: 507 KCIACKLDIKSYGHFCFICEVAFHIKCI--KDVDGLGIVKS 545
>dbj|BAB27445.1| (AK011171) putative [Mus musculus]
Length = 121
Score = 29.6 bits (65), Expect = 7.8
Identities = 25/77 (32%), Positives = 38/77 (48%), Gaps = 7/77 (9%)
Frame = +2
Query: 77 PGEKCYTCGLPLLSRQFFV-FPCQHSFHSDCLGRKV--LEQAGVGKSSRIRELQMQIQKG 247
P +C C ++ F PC H FH CL R + +EQ + + +E Q + K
Sbjct: 19 PHGQCVICLYGFQEKEAFTKTPCYHYFHCHCLARYIQHMEQE-LTTQEQEQERQHVVTKQ 77
Query: 248 LVSGTQ----RETVVAELDALVAS 307
G Q RE +V +L +L A+
Sbjct: 78 KAVGVQCPVCREPLVYDLASLKAA 101
>pir||A33926 DNA-directed RNA polymerase (EC 2.7.7.6) chain A - Halobacterium
salinarum
Length = 972
Score = 29.6 bits (65), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 35 VDIAALDHRYAIVEPGEKCYTCG 103
+D+ +D R +++PG +C TCG
Sbjct: 44 IDMGLMDPRLGVIDPGLECKTCG 66
>sp|P15350|RPA1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT A'
emb|CAA40426.1| (X57144) RNA polymerase subunit A [Halobacterium salinarum]
Length = 971
Score = 29.6 bits (65), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 35 VDIAALDHRYAIVEPGEKCYTCG 103
+D+ +D R +++PG +C TCG
Sbjct: 44 IDMGLMDPRLGVIDPGLECKTCG 66
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,233,900
Number of Sequences: 705144
Number of extensions: 3516882
Number of successful extensions: 10720
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 10341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10705
length of database: 222,175,239
effective HSP length: 107
effective length of database: 146,724,831
effective search space used: 5868993240
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)