Score E
Sequences producing significant alignments: (bits) Value
pir||T00575 probable DNA-binding protein T27E13.1 - Arabido... 32 1.4
gb|AAA44864.1| (L20571) envelope protein gp120/gp41 [Human ... 32 1.9
ref|NP_107747.1| hypothetical protein [Mesorhizobium loti] ... 30 5.4
pir||T29718 hypothetical protein K11G9.1 - Caenorhabditis e... 30 5.4
pir||T18458 26S proteasome regulatory complex chain p31 [si... 30 7.1
gb|AAF50565.1| (AE003559) CG8564 gene product [Drosophila m... 30 7.1
gb|AAB00755.1| (J03654) pol polyprotein [Human immunodefici... 30 7.1
gb|AAF82029.1|AF208027_2 (AF208027) pol protein [Human immu... 30 7.1
gb|AAF46738.1| (AE003454) Jhe gene product [Drosophila mela... 30 7.1
sp|P05962|POL_HV2NZ POL POLYPROTEIN [CONTAINS: PROTEASE (RE... 30 7.1
sp|P43075|TRNL_CANAL TRNA LIGASE >gi|7548492|gb|AAA34373.2|... 30 7.1
gb|AAK05593.1|AE006380_1 (AE006380) sugar ABC transporter s... 30 9.2
gb|AAA23210.1| (L35496) neurotoxin type F [Clostridium botu... 30 9.2
ref|NP_073755.1| Rep [Treponema denticola] >gi|12313703|gb|... 30 9.2
gb|AAG01403.1| (AF251281) recombinant botulinum toxin F HC ... 30 9.2
sp|Q09879|UBPB_SCHPO PUTATIVE UBIQUITIN CARBOXYL-TERMINAL H... 30 9.2
gb|AAC61504.1| (AF056118) envelope glycoprotein [Human immu... 30 9.2
ref|NP_078353.1| hypothetical ferrichrome ABC transporter [... 30 9.2
emb|CAC22694.1| (AL389894) hypothetical protein L779.02 [Le... 30 9.2
>pir||T00575 probable DNA-binding protein T27E13.1 - Arabidopsis thaliana
gb|AAC16930.1| (AC002338) putative WRKY-type DNA-binding protein [Arabidopsis
thaliana]
Length = 393
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 183 VQGNQPPRSVYNASFDGVGSSRSDERVTVWRTSSALVRPGRENRQGSVAINRT 25
V+GN PRS Y +F G G + ER + GR N A+ R+
Sbjct: 341 VKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTALRRS 393
>gb|AAA44864.1| (L20571) envelope protein gp120/gp41 [Human immunodeficiency virus
type 1]
Length = 876
Score = 32.0 bits (71), Expect = 1.9
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Frame = -3
Query: 255 RLWSLLQPYLLARPVPGNISHHSTVQG-----NQPPRSVYNASFDGVGSSRSDERVTVWR 91
R W + + A P+PGN++ HS + G +QP S + VG D +WR
Sbjct: 432 RSWMKGESRIYAPPIPGNLTCHSNITGMILQLDQPWNSTGENTLRPVGGDMKD----IWR 487
Query: 90 T 88
T
Sbjct: 488 T 488
>ref|NP_107747.1| hypothetical protein [Mesorhizobium loti]
dbj|BAB53533.1| (AP003011) hypothetical protein [Mesorhizobium loti]
Length = 254
Score = 30.4 bits (67), Expect = 5.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 422 YEFAVQTEVPQTDNFIFGETQAISLSGLKKKFLEWQHGRTVIGVAYSARNDYI 264
Y F +P TD + S L+ + L WQ G V+G + A + YI
Sbjct: 48 YNFKSTEGIPMTDIAFTSSKPSFSPLRLQDRSLAWQVGAVVLGTLFLALSSYI 100
>pir||T29718 hypothetical protein K11G9.1 - Caenorhabditis elegans
gb|AAB04976.1| (U64853) strong similarity to type-B carboxyesterases
[Caenorhabditis elegans]
Length = 565
Score = 30.4 bits (67), Expect = 5.4
Identities = 22/60 (36%), Positives = 36/60 (59%), Gaps = 4/60 (6%)
Frame = +3
Query: 264 DIVVTSRVCDANHSSTVLPLKEFLLEAT*RYRLCL----SEDEIVCLGNFGLNRELICLD 431
+I + CD + SST LP+K+ +L T YRL + + + VC GNFGL + + L
Sbjct: 130 EISSSREFCDYSISST-LPMKDVIL-VTMNYRLGILGFFTTGDEVCPGNFGLWDQTLALQ 187
Query: 432 EIRR 443
+++
Sbjct: 188 WVQK 191
>pir||T18458 26S proteasome regulatory complex chain p31 [similarity] - malaria
parasite (Plasmodium falciparum)
emb|CAA15600.1| (AL008970) 26S Proteasome regulatory subunit S14 [Plasmodium
falciparum]
Length = 304
Score = 30.0 bits (66), Expect = 7.1
Identities = 20/84 (23%), Positives = 40/84 (46%), Gaps = 6/84 (7%)
Frame = +3
Query: 171 DCLGLLSDEICCLAQVEPVNMVEE-----DSKVSQDDIVVTSRVCDANHSSTVL-PLKEF 332
+C+ L D ICC + ++E D+ ++ ++ + S CD N +L LK
Sbjct: 7 ECIKLYKDLICCYNNISEKELIEGTNDDLDNLLNLNEDISISTACDINKCKEILGKLKLL 66
Query: 333 LLEAT*RYRLCLSEDEIVCLGNFGLNRELI 422
++ + S + ++C+G + LI
Sbjct: 67 IIHLS-------SVNPLICIGQKDIRELLI 89
>gb|AAF50565.1| (AE003559) CG8564 gene product [Drosophila melanogaster]
Length = 504
Score = 30.0 bits (66), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +2
Query: 14 PVPLVLLMATEPWRFSRPGRTRAEDVRHTVTRSSDRELPTPSK 142
PV ++ + E W R R+ D+RH + R + LP PS+
Sbjct: 340 PVEMISQIGHESWYGIREMCKRSFDLRHQIVREKEPPLPWPSR 382
>gb|AAB00755.1| (J03654) pol polyprotein [Human immunodeficiency virus type 2]
Length = 961
Score = 30.0 bits (66), Expect = 7.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 216 VEPVNMVEEDSKVSQ--DDIVVTSRVCDANHSSTVLPLKEFL 335
+EP ED + Q DDI++ S D H VL LKE L
Sbjct: 277 LEPFRKANEDVIIIQYMDDILIASDRTDLEHDKVVLQLKELL 318
>gb|AAF82029.1|AF208027_2 (AF208027) pol protein [Human immunodeficiency virus type 2]
Length = 1018
Score = 30.0 bits (66), Expect = 7.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 216 VEPVNMVEEDSKVSQ--DDIVVTSRVCDANHSSTVLPLKEFL 335
++P ED + Q DDI+V S D H VL LKE L
Sbjct: 334 LDPFRKANEDXIIIQYMDDILVASDRTDLEHDQVVLQLKELL 375
>gb|AAF46738.1| (AE003454) Jhe gene product [Drosophila melanogaster]
gb|AAF72161.1|AF233526_1 (AF233526) related juvenile hormone esterase [Drosophila
melanogaster]
Length = 562
Score = 30.0 bits (66), Expect = 7.1
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 153 KHFAEVDCLGLL-SDEICCLAQVEPVNMVEEDSKVSQDDIVVTSRVCD 293
K F D G+ +D+IC L Q M +++++++DD++VT R+C+
Sbjct: 449 KIFQNEDLRGVAHADDICYLFQ-----MAGDETEMNRDDLMVTERLCE 491
>sp|P05962|POL_HV2NZ POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN) ; REVERSE
TRANSCRIPTASE ; RIBONUCLEASE H ]
Length = 1035
Score = 30.0 bits (66), Expect = 7.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 216 VEPVNMVEEDSKVSQ--DDIVVTSRVCDANHSSTVLPLKEFL 335
+EP ED + Q DDI++ S D H VL LKE L
Sbjct: 351 LEPFRKANEDVIIIQYMDDILIASDRTDLEHDKVVLQLKELL 392
>sp|P43075|TRNL_CANAL TRNA LIGASE
gb|AAA34373.2| (L13380) transfer RNA ligase [Candida albicans]
Length = 832
Score = 30.0 bits (66), Expect = 7.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Frame = -1
Query: 332 KFLEWQHGRTVIGVAYSAR------NDYIILRDFGVFFN 234
KFLEW +G+ + + AR ND I +R + FFN
Sbjct: 45 KFLEWDYGKPSVQLPIQARGLFTLNNDTIAVRGYDKFFN 83
>gb|AAK05593.1|AE006380_1 (AE006380) sugar ABC transporter substrate binding protein
[Lactococcus lactis subsp. lactis]
Length = 483
Score = 29.6 bits (65), Expect = 9.2
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 228 LLARPVPGNISHHSTVQGNQPPRSVYNASFDGVGSSRSDERV 103
L PV GNI + N+ YN S DGV S S E+V
Sbjct: 142 LYGYPVNGNIYAQQVITFNKQYLDKYNLSIDGVDSFASAEKV 183
>gb|AAA23210.1| (L35496) neurotoxin type F [Clostridium botulinum]
emb|CAA57358.1| (X81714) BoNT/F [Clostridium botulinum]
Length = 1278
Score = 29.6 bits (65), Expect = 9.2
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 4/58 (6%)
Frame = -1
Query: 332 KFLEWQHGRTVIGVAYSARNDYIILRDFG----VFFNHIYWLDLCQATYLITQQSKAINL 165
K + + G+T I YS D IL+DF ++ Y L+L + ITQ S +N+
Sbjct: 1066 KVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNI 1125
Query: 164 RE 159
+
Sbjct: 1126 NQ 1127
>ref|NP_073755.1| Rep [Treponema denticola]
gb|AAG50423.1|AF112856_1 (AF112856) Rep [Treponema denticola]
Length = 481
Score = 29.6 bits (65), Expect = 9.2
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = -1
Query: 389 TDNFIFGETQAISLSGLKKKFLEWQHGRTVIG------VAYSARNDYIILRDFGVFFNHI 228
TD F + ++L KKK+ +W H R +G A D+ + G+ ++H
Sbjct: 255 TDTFYHSK---LTLEEAKKKYPDWYHQRIELGREKKEWTCKRALYDWWKRQVTGIVYHHR 311
Query: 227 YWLDLCQATYLI 192
Y+ +C Y +
Sbjct: 312 YFFIMCLTVYAV 323
>gb|AAG01403.1| (AF251281) recombinant botulinum toxin F HC fragment [synthetic
construct]
Length = 432
Score = 29.6 bits (65), Expect = 9.2
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 4/58 (6%)
Frame = -1
Query: 332 KFLEWQHGRTVIGVAYSARNDYIILRDFG----VFFNHIYWLDLCQATYLITQQSKAINL 165
K + + G+T I YS D IL+DF ++ Y L+L + ITQ S +N+
Sbjct: 220 KVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNI 279
Query: 164 RE 159
+
Sbjct: 280 NQ 281
>sp|Q09879|UBPB_SCHPO PUTATIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE C188.08C (UBIQUITIN
THIOLESTERASE) (UBIQUITIN-SPECIFIC PROCESSING PROTEASE)
(DEUBIQUITINATING ENZYME)
pir||T41188 probable ubiquitin carboxyl-terminal hydrolase - fission yeast
(Schizosaccharomyces pombe)
emb|CAB41228.1| (AL049662) putative ubiquitin carboxyl-terminal hydrolase
[Schizosaccharomyces pombe]
Length = 1108
Score = 29.6 bits (65), Expect = 9.2
Identities = 18/43 (41%), Positives = 23/43 (52%)
Frame = -1
Query: 452 LPNPSDLIKTYEFAVQTEVPQTDNFIFGETQAISLSGLKKKFL 324
+PN S+ I YE +E N IF ET +SLS L +K L
Sbjct: 869 VPNDSN-ITLYEILYSSEEEMPSNVIFYETMDVSLSDLDRKRL 910
>gb|AAC61504.1| (AF056118) envelope glycoprotein [Human immunodeficiency virus type
1]
Length = 180
Score = 29.6 bits (65), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -3
Query: 252 LWSLLQPYLLARPVPGNISHHSTVQG 175
LW +++P L A P+ GNI+ S ++G
Sbjct: 150 LWQMVRPALYAPPIAGNITCSSNIRG 175
>ref|NP_078353.1| hypothetical ferrichrome ABC transporter [Ureaplasma urealyticum]
pir||F82880 hypothetical ferrichrome ABC transporter UU515 [imported] -
Ureaplasma urealyticum
gb|AAF30928.1|AE002150_2 (AE002150) hypothetical ferrichrome ABC transporter [Ureaplasma
urealyticum]
Length = 351
Score = 29.6 bits (65), Expect = 9.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 278 RNDYIILRDFGVFFNHIYWL-DLCQATYLITQQSKAINLREVFTMRALMGLAV 123
R DYI+ + G+ N IYWL +C T I S +I L + + ++G+ +
Sbjct: 240 RKDYILAKSLGIKVNLIYWLVAICVVTITI---SSSILLGIIALLGVIVGIII 289
>emb|CAC22694.1| (AL389894) hypothetical protein L779.02 [Leishmania major]
Length = 4124
Score = 29.6 bits (65), Expect = 9.2
Identities = 25/95 (26%), Positives = 38/95 (39%)
Frame = +3
Query: 138 QSSHCKHFAEVDCLGLLSDEICCLAQVEPVNMVEEDSKVSQDDIVVTSRVCDANHSSTVL 317
Q ++ F LGLL+ E C + VN +D +D +A + V+
Sbjct: 1560 QCANANLFYAQRALGLLTPESCQHTRAAGVNSSADDDAACEDS--------EAVRAGMVV 1611
Query: 318 PLKEFLLEAT*RYRLCLSEDEIVCLGNFGLNRELI 422
PL F + R +LCLS G + EL+
Sbjct: 1612 PLGFFTQHSLRRMQLCLSVPLPFATNTTGGSSELV 1646
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,030,528
Number of Sequences: 705144
Number of extensions: 4355154
Number of successful extensions: 395137003131
Number of sequences better than 10.0: 268721878
Number of HSP's better than 10.0 without gapping: 11587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11895
length of database: 222,175,239
effective HSP length: 109
effective length of database: 145,314,543
effective search space used: 6975098064
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)