Score E
Sequences producing significant alignments: (bits) Value
gb|U49840.1|OSU49840 Oryza sativa subsp. indica large ribos... 608 e-171
gb|AC122148.1| Oryza sativa (japonica cultivar-group) chrom... 602 e-169
gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D... 602 e-169
dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete... 602 e-169
emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC O... 590 e-166
gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J1... 587 e-164
emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome 573 e-160
emb|X01365.1|CHZM23S Maize chloroplast DNA for 4.5S and 23S... 573 e-160
emb|X15901.1|CHOSXX Oryza sativa complete chloroplast genome 573 e-160
emb|Z00028.1|CHZMRRNA Zea mays chloroplast rRNA-operon 573 e-160
gb|AF254866.1|AF254866 Amaranthus tricolor 23S ribosomal RN... 537 e-149
emb|AJ400848.1|SOL400848 Spinacia oleracea complete chlorop... 531 e-148
dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DN... 531 e-148
emb|Z00044.1|CHNTXX Nicotiana tabacum chloroplast genome DNA 525 e-146
gb|M75722.1|ALSCP23SA Alnus incana chloroplast 23S ribosoma... 525 e-146
gb|AY029747.1| Populus deltoides 23S ribosomal RNA, 4.5S ri... 519 e-144
gb|J01446.1|TOBCPRG23 Tobacco chloroplast 23S and 4.5S rRNA... 519 e-144
gb|AF355761.1| Rhizophora stylosa 23S ribosomal RNA gene, c... 504 e-140
gb|AF355760.1| Rhizophora mucronata 23S ribosomal RNA gene,... 504 e-140
dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete g... 502 e-139
gb|AF355762.1| Ceriops tagal 23S ribosomal RNA gene, comple... 498 e-138
emb|AJ316582.1|ABE316582 Atropa belladonna complete chlorop... 492 e-136
gb|AF355764.1| Rhizophora mangle 23S ribosomal RNA gene, co... 489 e-135
gb|AF525938.1| Casuarina equisetifolia 23S ribosomal RNA ge... 487 e-134
emb|X06235.1|MIOBRRNP Oenothera berteriana mitDNA with part... 487 e-134
gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome 485 e-134
dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, co... 485 e-134
gb|AC093544.8| Medicago truncatula chloroplast, complete ge... 483 e-133
gb|AF355766.1| Amaranthus hypochondriacus 23S ribosomal RNA... 483 e-133
emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chl... 479 e-132
gb|AF355763.1| Rhizophora apiculata 23S ribosomal RNA gene,... 473 e-130
emb|X55033.1|CHPSRRNAO P.sativum chloroplast DNA of the sin... 473 e-130
gb|M37430.1|PEACPDKAA Pea Chloroplast 4.5S, 5S, 16S and 23S... 473 e-130
gb|AF393612.1| Sphagnum rubellum large subunit ribosomal RN... 462 e-127
gb|AF355765.1| Amaranthus hybridus 23S ribosomal RNA gene, ... 452 e-124
gb|AF393576.1| Anthoceros punctatus small subunit ribosomal... 444 e-122
dbj|AB086179.1| Anthoceros formosae chloroplast DNA, comple... 444 e-122
dbj|AB087478.1| Anthoceros formosae chloroplast 23S rRNA, c... 444 e-122
dbj|AB073981.1| Anthoceros formosae chloroplast gene for 23... 444 e-122
emb|AJ005357.1|ATA005357 Aesculus turbinata microsatellite ... 442 e-121
emb|AJ535065.1|OSA535065 Oryza sativa (japonica cultivar-gr... 440 e-120
dbj|AP003248.4| Oryza sativa (japonica cultivar-group) geno... 440 e-120
gb|AF393587.1| Climacium dendroides large subunit ribosomal... 431 e-118
dbj|AP003280.2| Oryza sativa (japonica cultivar-group) geno... 429 e-117
emb|AJ318074.1|CSA318074 Cucumis sativus chloroplast ccsA g... 398 e-108
dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete ge... 392 e-106
emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genom... 385 e-104
emb|AJ007508.1|GGN7508 Gnetum gnemon chloroplast psaC, ccsA... 373 e-100
gb|AF393606.1| Pellia neesiana large subunit ribosomal RNA ... 369 3e-99
gb|AF393586.1| Chara sp. CL-2002-2 small subunit ribosomal ... 362 6e-97
gb|AF393577.1| Bazzania trilobata large subunit ribosomal R... 360 2e-96
gb|AC112514.1| Oryza sativa chromosome 10 clone OSJNAb0023M... 360 2e-96
gb|AC092750.2| Oryza sativa (japonica cultivar-group) culti... 360 2e-96
gb|AF393584.1| Chara sp. CL-2002-1 large subunit ribosomal ... 356 3e-95
gb|AF393579.1| Chara corallina large subunit ribosomal RNA ... 356 3e-95
dbj|AP003373.3| Oryza sativa (japonica cultivar-group) geno... 356 3e-95
emb|AL606447.2|OSJN00011 Oryza sativa genomic DNA, chromoso... 350 2e-93
gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, comple... 346 2e-92
emb|X62099.1|CHEVIARRN E.virginiana plastid ribosomal RNA o... 346 2e-92
gb|AF393582.1| Chaetosphaeridium globosum SAG 26.98 large s... 344 9e-92
gb|AF494278.1| Chaetosphaeridium globosum chloroplast, comp... 344 9e-92
gb|AF393616.1| Zygnema circumcarinatum large subunit riboso... 339 5e-90
gb|AF393614.1| Staurastrum punctulatum tRNA-Ala (trnA(ugc))... 339 5e-90
gb|AF393590.1| Cosmarium botrytis large subunit ribosomal R... 339 5e-90
gb|L42844.1|CSKCPRGOL Cosmarium botrytis large subunit ribo... 339 5e-90
emb|X59768.1|CA23SRR C.americana 23S rRNA gene 314 2e-82
gb|AF393603.1| Nitella sp. CL-2002 large subunit ribosomal ... 304 1e-79
emb|AJ001025.1|CLPACHLLN Picea abies chloroplast DNA for ch... 300 2e-78
gb|AF393610.1| Spirogyra maxima large subunit ribosomal RNA... 298 7e-78
gb|M36716.1|MZEMTCPAA Maize mitochondrion with chloroplast ... 298 7e-78
gb|AF355767.1| Bruguiera gymnorrhiza 23S ribosomal RNA gene... 289 5e-75
gb|L49152.1|MEWCPRGOL Mesostigma viride large-subunit ribos... 252 5e-64
gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, c... 252 5e-64
dbj|AB055077.1| Triticum aestivum tamdr1 mRNA for multidrug... 250 2e-63
gb|L42852.1|PDFCPRGOL Pseudoscourfieldia marina large subun... 241 2e-60
gb|AY123764.1| Nicotiana tabacum chloroplast 16S ribosomal ... 227 2e-56
gb|AF393594.1| Coleochaete scutata large subunit ribosomal ... 223 3e-55
gb|AF393593.1| Coleochaete orbicularis small subunit riboso... 223 3e-55
gb|AF393591.1| Coleochaete nitellarum large subunit ribosom... 223 3e-55
gb|AF393601.1| Mesotaenium caldariorum large subunit riboso... 214 2e-52
emb|Z18289.1|PPC16SRNA Palmaria palmata Chloroplast for 16S... 204 2e-49
emb|X69917.1|BCMIDDLYB B.corolliflora middly repeated DNA 192 5e-46
dbj|AP005376.1| Thermosynechococcus elongatus BP-1 DNA, com... 192 5e-46
gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complet... 192 5e-46
gb|AF393596.1| Entransia fimbriata large subunit ribosomal ... 158 1e-35
gb|L42862.1|PNFCPRGOL Pycnococcus sp. CCMP 1203 large subun... 150 3e-33
gb|AF393608.1| Pyramimonas parkeae small subunit ribosomal ... 146 4e-32
gb|L42846.1|GLZCPRGOL Gloeotilopsis sterilis large subunit ... 146 4e-32
gb|L43538.1|CRECPRRNLA Chlamydomonas peterfii chloroplast l... 146 4e-32
gb|L42858.1|CRECPRGOLA Chlamydomonas gigantea large subunit... 146 4e-32
gb|L42853.1|PYTCPRGOL Pyramimonas parkeae large subunit rib... 146 4e-32
emb|X68887.1|CHCPRRNL1 Chloroplast Chlamydomonas peterfii r... 146 4e-32
gb|AF393599.1| Klebsormidium subtilissimum large subunit ri... 142 5e-31
gb|AF393598.1| Klebsormidium flaccidum small subunit riboso... 142 5e-31
gb|L42861.1|KLBCPRGOL Klebsormidium flaccidum large subunit... 142 5e-31
tpg|BK000554.1| TPA: Chlamydomonas reinhardtii chloroplast,... 141 2e-30
gb|L49154.1|MNXCPRGOLA Monomastix species chloroplast large... 141 2e-30
gb|L43356.1|CRECPRRNLG Chlamydomonas zebra chloroplast larg... 141 2e-30
gb|L49148.1|CRECPRGOLF Chlamydomonas mexicana chloroplast l... 141 2e-30
gb|L43541.1|PDWCPRRNL Pedinomonas tuberculata chloroplast l... 141 2e-30
>gb|U49840.1|OSU49840 Oryza sativa subsp. indica large ribosomal RNA gene, chloroplast
gene encoding chloroplast rRNA, partial sequence
Length = 1130
Score = 608 bits (316), Expect = e-171
Identities = 323/330 (97%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 446
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 447 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 506
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 566
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 626
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 686
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
||||||||||||||||||||||||||||||
Sbjct: 687 tgcaagactcacccgtcgagcagagacgaa 716
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNAb0075K12, complete sequence
Length = 125936
Score = 602 bits (313), Expect = e-169
Identities = 322/330 (97%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 95535 ctggacagaaagaccctatgaagctttactgttccctgtgattggctttgggcctttcct 95594
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 95595 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 95654
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95655 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 95714
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95715 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 95774
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95775 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 95834
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
||||||||||||||||||||||||||||||
Sbjct: 95835 tgcaagactcacccgtcgagcagagacgaa 95864
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence
Length = 144459
Score = 602 bits (313), Expect = e-169
Identities = 322/330 (97%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 29599 ctggacagaaagaccctatgaagctttactgttccctgtgattggctttgggcctttcct 29658
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 29659 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 29718
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29719 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 29778
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29779 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 29838
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29839 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 29898
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
||||||||||||||||||||||||||||||
Sbjct: 29899 tgcaagactcacccgtcgagcagagacgaa 29928
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome
Length = 134545
Score = 602 bits (313), Expect = e-169
Identities = 322/330 (97%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 117927 ctggacagaaagaccctatgaagctttactgtttcctgggattggctttgggcctttcct 117868
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 117867 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 117808
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117807 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 117748
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117747 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 117688
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117687 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 117628
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
||||||||||||||||||||||||||||||
Sbjct: 117627 tgcaagactcacccgtcgagcagagacgaa 117598
Score = 602 bits (313), Expect = e-169
Identities = 322/330 (97%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 96967 ctggacagaaagaccctatgaagctttactgtttcctgggattggctttgggcctttcct 97026
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 97027 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 97086
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97087 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 97146
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97147 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 97206
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97207 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 97266
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
||||||||||||||||||||||||||||||
Sbjct: 97267 tgcaagactcacccgtcgagcagagacgaa 97296
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 139684
Score = 590 bits (307), Expect = e-166
Identities = 318/327 (97%)
Strand = Plus / Plus
Query: 12 gacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcctgcg 71
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 19192 gacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcctgtg 19251
Query: 72 cagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtgagat 131
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 19252 cagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtgagat 19311
Query: 132 accactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggacagtc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19312 accactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggacagtc 19371
Query: 192 tcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaaagg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19372 tcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaaagg 19431
Query: 252 tttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgactgc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19432 tttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgactgc 19491
Query: 312 aagactcacccgtcgagcagagacgaa 338
||||||||||| |||||||||||||||
Sbjct: 19492 aagactcacccatcgagcagagacgaa 19518
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete
sequence
Length = 116932
Score = 587 bits (305), Expect = e-164
Identities = 323/333 (96%), Gaps = 3/333 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45767 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 45708
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnn---cccgagccatcag 125
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 45707 gcgcagcttaggtggaaggcgaagaaggcccccttccggggggggggcccgagccatcag 45648
Query: 126 tgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaaggg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45647 tgagataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaaggg 45588
Query: 186 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45587 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 45528
Query: 246 caaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagctt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45527 caaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagctt 45468
Query: 306 gactgcaagactcacccgtcgagcagagacgaa 338
|||||||||||||||||||||||||||||||||
Sbjct: 45467 gactgcaagactcacccgtcgagcagagacgaa 45435
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome
Length = 140384
Score = 573 bits (298), Expect = e-160
Identities = 321/331 (96%), Gaps = 2/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 101203 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 101262
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 101263 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcc-gagccatcagtga 101321
Query: 129 gataccactctggaagagctc-ggattctaaccttgtgtcagacccgcgggccaagggac 187
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 101322 gataccactctggaagagctcaggattctaaccttgtgtcagacccgcgggccaagggac 101381
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101382 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 101441
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101442 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 101501
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
|||||||||||||||||||||||||||||||
Sbjct: 101502 ctgcaagactcacccgtcgagcagagacgaa 101532
Score = 573 bits (298), Expect = e-160
Identities = 321/331 (96%), Gaps = 2/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121534 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 121475
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 121474 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcc-gagccatcagtga 121416
Query: 129 gataccactctggaagagctc-ggattctaaccttgtgtcagacccgcgggccaagggac 187
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121415 gataccactctggaagagctcaggattctaaccttgtgtcagacccgcgggccaagggac 121356
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121355 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 121296
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121295 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 121236
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
|||||||||||||||||||||||||||||||
Sbjct: 121235 ctgcaagactcacccgtcgagcagagacgaa 121205
>emb|X01365.1|CHZM23S Maize chloroplast DNA for 4.5S and 23S ribosomal RNA
Length = 3079
Score = 573 bits (298), Expect = e-160
Identities = 321/331 (96%), Gaps = 2/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2144 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 2203
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2204 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcc-gagccatcagtga 2262
Query: 129 gataccactctggaagagctc-ggattctaaccttgtgtcagacccgcgggccaagggac 187
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 gataccactctggaagagctcaggattctaaccttgtgtcagacccgcgggccaagggac 2322
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 2382
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 2442
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
|||||||||||||||||||||||||||||||
Sbjct: 2443 ctgcaagactcacccgtcgagcagagacgaa 2473
>emb|X15901.1|CHOSXX Oryza sativa complete chloroplast genome
Length = 134525
Score = 573 bits (298), Expect = e-160
Identities = 321/331 (96%), Gaps = 3/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97355 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 97414
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 97415 gcgcagcttaggtggaaggcgaagaaggccc--ttccgggggggcccgagccatcagtga 97472
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 97473 gataccactctggaagagctcggattctaaccttgtgtcaagacccgcgggccaagggac 97532
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97533 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 97592
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97593 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 97652
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
|||||||||||||||||||||||||||||||
Sbjct: 97653 ctgcaagactcacccgtcgagcagagacgaa 97683
Score = 573 bits (298), Expect = e-160
Identities = 321/331 (96%), Gaps = 3/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117763 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 117704
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 117703 gcgcagcttaggtggaaggcgaagaaggccc--ttccgggggggcccgagccatcagtga 117646
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 117645 gataccactctggaagagctcggattctaaccttgtgtcaagacccgcgggccaagggac 117586
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117585 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 117526
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117525 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 117466
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
|||||||||||||||||||||||||||||||
Sbjct: 117465 ctgcaagactcacccgtcgagcagagacgaa 117435
>emb|Z00028.1|CHZMRRNA Zea mays chloroplast rRNA-operon
Length = 8862
Score = 573 bits (298), Expect = e-160
Identities = 321/331 (96%), Gaps = 2/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7556 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 7615
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 7616 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcc-gagccatcagtga 7674
Query: 129 gataccactctggaagagctc-ggattctaaccttgtgtcagacccgcgggccaagggac 187
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7675 gataccactctggaagagctcaggattctaaccttgtgtcagacccgcgggccaagggac 7734
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7735 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 7794
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7795 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 7854
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
|||||||||||||||||||||||||||||||
Sbjct: 7855 ctgcaagactcacccgtcgagcagagacgaa 7885
>gb|AF254866.1|AF254866 Amaranthus tricolor 23S ribosomal RNA, complete sequence; chloroplast
gene for chloroplast product
Length = 3322
Score = 537 bits (279), Expect = e-149
Identities = 313/331 (94%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2560 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 2619
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2620 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 2679
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||
Sbjct: 2680 gataccactctggaagagctagaattctaaccttgtgtcaggacctgcgggccaagggac 2739
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 agtctcaggtagacagttcctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 2799
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 2800 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 2859
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 2860 ctgcaagacccacccgtcgagcagggacgaa 2890
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome
Length = 150725
Score = 531 bits (276), Expect = e-148
Identities = 312/331 (94%), Gaps = 1/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 129727 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 129668
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 129667 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 129608
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 129607 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 129548
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129547 attctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 129488
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 129487 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 129428
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 129427 ctgcaagacccacccgtcgagcagggacgaa 129397
Score = 531 bits (276), Expect = e-148
Identities = 312/331 (94%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 103718 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 103777
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 103778 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 103837
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 103838 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 103897
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103898 attctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 103957
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 103958 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 104017
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 104018 ctgcaagacccacccgtcgagcagggacgaa 104048
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence,
strain:Columbia
Length = 154478
Score = 531 bits (276), Expect = e-148
Identities = 312/331 (94%), Gaps = 1/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 131894 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcttttcct 131835
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 131834 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 131775
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 131774 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 131715
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131714 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 131655
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 131654 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 131595
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 131594 ctgcaagacccacccgtcgagcagggacgaa 131564
Score = 531 bits (276), Expect = e-148
Identities = 312/331 (94%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 106755 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcttttcct 106814
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 106815 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 106874
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 106875 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 106934
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106935 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 106994
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 106995 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 107054
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 107055 ctgcaagacccacccgtcgagcagggacgaa 107085
>emb|Z00044.1|CHNTXX Nicotiana tabacum chloroplast genome DNA
Length = 155939
Score = 525 bits (273), Expect = e-146
Identities = 311/331 (93%), Gaps = 1/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 134233 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 134174
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 134173 gcgcagcttaggtggaaggcgaagaaggcctccttccgggggggcccgagccatcagtga 134114
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||| ||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 134113 gataccactctggaagggctagaattctaaccttgtgtcaggacctacgggccaagggac 134054
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134053 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 133994
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 133993 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 133934
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 133933 ctgcaagacccacccgtcgagcagggacgaa 133903
Score = 525 bits (273), Expect = e-146
Identities = 311/331 (93%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 108393 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 108452
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 108453 gcgcagcttaggtggaaggcgaagaaggcctccttccgggggggcccgagccatcagtga 108512
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||| ||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 108513 gataccactctggaagggctagaattctaaccttgtgtcaggacctacgggccaagggac 108572
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108573 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 108632
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 108633 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 108692
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 108693 ctgcaagacccacccgtcgagcagggacgaa 108723
>gb|M75722.1|ALSCP23SA Alnus incana chloroplast 23S ribosomal RNA (23S rRNA) gene
Length = 2811
Score = 525 bits (273), Expect = e-146
Identities = 311/331 (93%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2066 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 2125
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||| ||||||||||||| |||||| |||||||| |||||||
Sbjct: 2126 gcgcagcttaggtggagggcgaagaaggcctccttccgggggggcccgagccgtcagtga 2185
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 2186 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 2245
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 2305
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 2306 aaggtttcctcgggccagacggagattggccctcgagtgcaaaggcagaagggagcttga 2365
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 2366 ctgcaagacccacccgtcgagcagggacgaa 2396
>gb|AY029747.1| Populus deltoides 23S ribosomal RNA, 4.5S ribosomal RNA, and 5S
ribosomal RNA genes, complete sequence; chloroplast genes
for chloroplast products
Length = 5157
Score = 519 bits (270), Expect = e-144
Identities = 310/331 (93%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3838 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 3897
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 3898 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccgtcagtga 3957
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||| || | |||||||||||||||||| ||| |||||||||||||
Sbjct: 3958 gataccactctggaagggcaagaattctaaccttgtgtcaggacctacgggccaagggac 4017
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 4077
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 4078 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 4137
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 4138 ctgcaagacccacccgtcgagcagggacgaa 4168
>gb|J01446.1|TOBCPRG23 Tobacco chloroplast 23S and 4.5S rRNA genes
Length = 3166
Score = 519 bits (270), Expect = e-144
Identities = 308/328 (93%), Gaps = 1/328 (0%)
Strand = Plus / Plus
Query: 12 gacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcctgcg 71
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2162 gacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcctgcg 2221
Query: 72 cagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtgagat 131
||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 2222 cagcttaggtggaaggcgaagaaggcctccttccgggggggcccgagccatcagtgagat 2281
Query: 132 accactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggacagt 190
||||||||||||| ||| | |||||||||||||||||| ||| ||||||||||||||||
Sbjct: 2282 accactctggaagggctagaattctaaccttgtgtcaggacctacgggccaagggacagt 2341
Query: 191 ctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaaag 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2342 ctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaaag 2401
Query: 251 gtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgactg 310
||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 2402 gtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttgactg 2461
Query: 311 caagactcacccgtcgagcagagacgaa 338
|||||| |||||||||||||| ||||||
Sbjct: 2462 caagacccacccgtcgagcagggacgaa 2489
>gb|AF355761.1| Rhizophora stylosa 23S ribosomal RNA gene, complete sequence;
chloroplast gene for chloroplast product
Length = 2894
Score = 504 bits (262), Expect = e-140
Identities = 311/334 (93%), Gaps = 4/334 (1%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2103 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 2162
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2163 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggtccaagccatcagtga 2222
Query: 129 gataccactctggaagagctcggattctaacc---ttgtgtcag-acccgcgggccaagg 184
|||||||||||||||||||| | ||||||||| ||||||||| ||| ||||||||||
Sbjct: 2223 gataccactctggaagagctagaattctaaccctcttgtgtcaggacctacgggccaagg 2282
Query: 185 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2283 gacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgt 2342
Query: 245 gcaaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagct 304
||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct: 2343 gcaaaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagct 2402
Query: 305 tgactgcaagactcacccgtcgagcagagacgaa 338
|||||||||||| |||||||||||||| ||||||
Sbjct: 2403 tgactgcaagacccacccgtcgagcagggacgaa 2436
>gb|AF355760.1| Rhizophora mucronata 23S ribosomal RNA gene, complete sequence;
chloroplast gene for chloroplast product
Length = 2902
Score = 504 bits (262), Expect = e-140
Identities = 309/331 (93%), Gaps = 2/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2115 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 2174
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2175 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggtccaagccatcagtga 2234
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||| | ||||||||||||| ||| |||| |||||||||||||
Sbjct: 2235 gataccactctggaagagctagaattctaaccttgtttcaggacctacgggccaagggac 2294
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2295 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 2354
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 2355 aa-gtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 2413
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 2414 ctgcaagacccacccgtcgagcagggacgaa 2444
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome
Length = 150519
Score = 502 bits (261), Expect = e-139
Identities = 307/331 (92%), Gaps = 1/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 128464 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcttttcct 128405
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct: 128404 gcgcagcttaggtggagggcgaagaaggcctccttccgggggggtccgagccatcagtga 128345
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccg-cgggccaagggac 187
|||||||||||||||||||| | |||||||||||||| |||| || ||| |||||||||
Sbjct: 128344 gataccactctggaagagctagaattctaaccttgtgccagaacctacggaccaagggac 128285
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 128284 agtctcaggtagacagtttctatggggcgtaggcctccccaaaggtaacggaggcgtgca 128225
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 128224 aaggtttcctcgggccagacggagattggccctcgagtgcaaaggcagaagggagcttga 128165
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 128164 ctgcaagacccacccgtcgagcagggacgaa 128134
Score = 502 bits (261), Expect = e-139
Identities = 307/331 (92%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 103992 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcttttcct 104051
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct: 104052 gcgcagcttaggtggagggcgaagaaggcctccttccgggggggtccgagccatcagtga 104111
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccg-cgggccaagggac 187
|||||||||||||||||||| | |||||||||||||| |||| || ||| |||||||||
Sbjct: 104112 gataccactctggaagagctagaattctaaccttgtgccagaacctacggaccaagggac 104171
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 104172 agtctcaggtagacagtttctatggggcgtaggcctccccaaaggtaacggaggcgtgca 104231
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 104232 aaggtttcctcgggccagacggagattggccctcgagtgcaaaggcagaagggagcttga 104291
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 104292 ctgcaagacccacccgtcgagcagggacgaa 104322
>gb|AF355762.1| Ceriops tagal 23S ribosomal RNA gene, complete sequence; chloroplast
gene for chloroplast product
Length = 2873
Score = 498 bits (259), Expect = e-138
Identities = 308/331 (93%), Gaps = 2/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2086 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 2145
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2146 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggtccaagccatcagtga 2205
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||
Sbjct: 2206 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 2265
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 agtctcagttggacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 2325
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 2326 aa-gtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 2384
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 2385 ctgcaagacccacccgtcgagcagggacgaa 2415
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan)
Length = 156687
Score = 492 bits (256), Expect = e-136
Identities = 310/333 (93%), Gaps = 3/333 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 108684 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 108743
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 108744 gcgcagcttaggtggaaggcgaagaaggcctccttccgggggggcccgagccatcagtga 108803
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgg-gccaaggga 186
|||||||||||||||| ||| | ||||||||||||||||| |||| ||| |||||||||
Sbjct: 108804 gataccactctggaagggctagaattctaaccttgtgtcaggacctacggtgccaaggga 108863
Query: 187 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 108864 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgagc 108923
Query: 247 aaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggca-gaagggagctt 305
||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 108924 aaaggtttcctcgggccggacggagattggccctcgagtgcaaaggcaggaagggagctt 108983
Query: 306 gactgcaagactcacccgtcgagcagagacgaa 338
||||||||||| |||||||||||||| ||||||
Sbjct: 108984 gactgcaagacccacccgtcgagcagggacgaa 109016
Score = 492 bits (256), Expect = e-136
Identities = 310/333 (93%), Gaps = 3/333 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 134873 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 134814
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 134813 gcgcagcttaggtggaaggcgaagaaggcctccttccgggggggcccgagccatcagtga 134754
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgg-gccaaggga 186
|||||||||||||||| ||| | ||||||||||||||||| |||| ||| |||||||||
Sbjct: 134753 gataccactctggaagggctagaattctaaccttgtgtcaggacctacggtgccaaggga 134694
Query: 187 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 134693 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgagc 134634
Query: 247 aaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggca-gaagggagctt 305
||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 134633 aaaggtttcctcgggccggacggagattggccctcgagtgcaaaggcaggaagggagctt 134574
Query: 306 gactgcaagactcacccgtcgagcagagacgaa 338
||||||||||| |||||||||||||| ||||||
Sbjct: 134573 gactgcaagacccacccgtcgagcagggacgaa 134541
>gb|AF355764.1| Rhizophora mangle 23S ribosomal RNA gene, complete sequence;
chloroplast gene for chloroplast product
Length = 2883
Score = 489 bits (254), Expect = e-135
Identities = 308/331 (93%), Gaps = 3/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2097 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 2156
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2157 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggtccaagccatcagtga 2216
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||
Sbjct: 2217 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 2276
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2277 agtctcaggtagacagtttgtatggggcgta-gcctcccaaaaggtaacggaggcgtgca 2335
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 2336 aa-gtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 2394
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 2395 ctgcaagacccacccgtcgagcagggacgaa 2425
>gb|AF525938.1| Casuarina equisetifolia 23S ribosomal RNA gene, partial sequence;
4.5S ribosomal RNA gene, complete sequence; and 5S
ribosomal RNA gene, partial sequence; chloroplast genes
for chloroplast product
Length = 1083
Score = 487 bits (253), Expect = e-134
Identities = 306/331 (92%), Gaps = 2/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 989 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 930
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||| |||||||| |||||| |||| || ||||| ||| |||
Sbjct: 929 gcgcagcttaggtggagggcgaagatggcccc-ttccgggggggcctgagccgtcactga 871
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||||||||| ||| |||||||||||||
Sbjct: 870 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 811
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 810 agtctcaggtagacagtttctatggggcgtaggccttccaaaaggtaacggaggcgcgca 751
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 750 aaggtttcctcgggccagacggagattggccctcgagtgcaaaggcagaagggagcttga 691
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 690 ctgcaagacccacccgtcgagcagggacgaa 660
>emb|X06235.1|MIOBRRNP Oenothera berteriana mitDNA with part of plastid rRNA operon
Length = 2900
Score = 487 bits (253), Expect = e-134
Identities = 306/331 (92%), Gaps = 5/331 (1%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 1733
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||| |||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 1734 gcgcaccttaggtggaaggcgaagaaggcctccttccgggggggcccgagccatcagtga 1793
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||
Sbjct: 1794 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 1853
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1854 agtctcaggtagacagtttctatggggcgtaggcctcc----gggtaacggaggcgtgca 1909
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct: 1910 aaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggtgcttga 1969
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 1970 ctgcaagacccacccgtcgagcagggacgaa 2000
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome
Length = 116866
Score = 485 bits (252), Expect = e-134
Identities = 304/331 (91%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct: 88318 ctggacagaaagaccctatgaagctttactgttccctgggattgtctttgggttcttctt 88377
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||| |||||||||||||||||||| || |||||| ||||||
Sbjct: 88378 gcgcagcttaggtggagggcgaagaaggcccccttccgggggggcctgagccaccagtga 88437
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||| ||||| ||| |||||||||||||
Sbjct: 88438 gataccactctggaagagctagaattctaaccttgcgtcaggacctacgggccaagggac 88497
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88498 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 88557
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| || || ||||||||||||||||||||||||||||||
Sbjct: 88558 aaggtttcctcgggccggacggaaatcggccctcgagtgcaaaggcagaagggagcttga 88617
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 88618 ctgcaagacccacccgtcgagcagggacgaa 88648
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence
Length = 119707
Score = 485 bits (252), Expect = e-134
Identities = 304/331 (91%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct: 90406 ctggacagaaagaccctatgaagctttactgttccctgggattgtctttgggttcttctt 90465
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||| |||||||||||||||||||| || |||||| ||||||
Sbjct: 90466 gcgcagcttaggtggagggcgaagaaggcccccttccgggggggcctgagccaccagtga 90525
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaagggac 187
|||||||||||||||||||| | |||||||||||| ||||| ||| |||||||||||||
Sbjct: 90526 gataccactctggaagagctagaattctaaccttgcgtcaggacctacgggccaagggac 90585
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90586 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 90645
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|||||||||||||||| |||||| || || ||||||||||||||||||||||||||||||
Sbjct: 90646 aaggtttcctcgggccggacggaaatcggccctcgagtgcaaaggcagaagggagcttga 90705
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 90706 ctgcaagacccacccgtcgagcagggacgaa 90736
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence
Length = 124033
Score = 483 bits (251), Expect = e-133
Identities = 303/330 (91%), Gaps = 3/330 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct: 21639 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgagcttttcct 21580
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||| ||||||||| |||||| | ||||||||||||||
Sbjct: 21579 gcgcagcttaggtggaaggcaaagaaggcctccttccgggggggctcgagccatcagtga 21520
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
|||||||||||||||||||| | |||||||||||||| ||| | | ||||||||||
Sbjct: 21519 gataccactctggaagagctagaattctaaccttgtgccagtacaga---ccaagggaca 21463
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21462 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 21403
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 21402 aggtttcctcgggccagacggagattggccctcgagtgcaaaggcagaagggagcttgac 21343
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
|||||||| |||||||||||||| ||||||
Sbjct: 21342 tgcaagacccacccgtcgagcagggacgaa 21313
>gb|AF355766.1| Amaranthus hypochondriacus 23S ribosomal RNA gene, complete sequence;
chloroplast gene for chloroplast product
Length = 2899
Score = 483 bits (251), Expect = e-133
Identities = 306/332 (92%), Gaps = 2/332 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2107 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 2166
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2167 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 2226
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||
Sbjct: 2227 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 2286
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc- 246
||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
Sbjct: 2287 agtctcaggtagacagtttctatggggggtaggcctcccaaaaggtaacgatggagtcca 2346
Query: 247 aaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttg 306
||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 2347 aaaggtttcctcgggccggacggagattggccctagagtgcaaaggcagaagggagcttg 2406
Query: 307 actgcaagactcacccgtcgagcagagacgaa 338
|||||||||| ||||| |||||||| ||||||
Sbjct: 2407 actgcaagacccacccttcgagcagggacgaa 2438
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence
Length = 163935
Score = 479 bits (249), Expect = e-132
Identities = 307/332 (92%), Gaps = 3/332 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct: 112514 ctggacagaaagaccctatgaagcttcactgttccctgggattgtctttgggcccttcct 112573
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct: 112574 gcgcagcttaggtggaaggcgaagaaggcctccttccgggggggcctgagccatcagtga 112633
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||| ||| | ||||||||| ||||||| |||| |||||||||||||
Sbjct: 112634 gataccactctggaagggctagaattctaacc-tgtgtcaggacctacgggccaagggac 112692
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 112693 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggtgtgca 112752
Query: 248 aaggtttcctc-gggccagacggacattggtcctcgagtgcaaaggcagaagggagcttg 306
||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 112753 aaggtttcctcggggccggacggagattggccctcgagtgcaaaggcagaagggagcttg 112812
Query: 307 actgcaagactcacccgtcgagcagagacgaa 338
|||||||||| |||||||||||||||||||||
Sbjct: 112813 actgcaagacccacccgtcgagcagagacgaa 112844
Score = 479 bits (249), Expect = e-132
Identities = 307/332 (92%), Gaps = 3/332 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct: 140814 ctggacagaaagaccctatgaagcttcactgttccctgggattgtctttgggcccttcct 140755
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct: 140754 gcgcagcttaggtggaaggcgaagaaggcctccttccgggggggcctgagccatcagtga 140695
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||| ||| | ||||||||| ||||||| |||| |||||||||||||
Sbjct: 140694 gataccactctggaagggctagaattctaacc-tgtgtcaggacctacgggccaagggac 140636
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 140635 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggtgtgca 140576
Query: 248 aaggtttcctc-gggccagacggacattggtcctcgagtgcaaaggcagaagggagcttg 306
||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 140575 aaggtttcctcggggccggacggagattggccctcgagtgcaaaggcagaagggagcttg 140516
Query: 307 actgcaagactcacccgtcgagcagagacgaa 338
|||||||||| |||||||||||||||||||||
Sbjct: 140515 actgcaagacccacccgtcgagcagagacgaa 140484
>gb|AF355763.1| Rhizophora apiculata 23S ribosomal RNA gene, complete sequence;
chloroplast gene for chloroplast product
Length = 2913
Score = 473 bits (246), Expect = e-130
Identities = 307/331 (92%), Gaps = 4/331 (1%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2128 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcct 2187
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2188 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggtccaagccatcagtga 2247
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||
Sbjct: 2248 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 2307
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 2308 agtctca-gtagacagtttctatggggcgta-gcttcccaaaaggtaacggaggcgtgca 2365
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
|| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 2366 aa-gtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagcttga 2424
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 2425 ctgcaagacccacccgtcgagcagggacgaa 2455
>emb|X55033.1|CHPSRRNAO P.sativum chloroplast DNA of the single ribosomal RNA operon
Length = 7920
Score = 473 bits (246), Expect = e-130
Identities = 303/330 (91%), Gaps = 4/330 (1%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 6572 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcttttcct 6631
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 6632 gcgcagcttaggtggaaggcaaagaaggcccccttccgggggggctcgagccatcagtga 6691
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
|||||||||||||||||||| | |||||||||||||| || | | ||||||||||
Sbjct: 6692 gataccactctggaagagctagaattctaaccttgtgccaagacaga---ccaagggaca 6748
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6749 gtctcaggtagacagtttctatggggcgtaggc-tcccaaaaggtaacggaggcgtgcaa 6807
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 6808 aggtttcctcgggccagacggagattggccctcgagtgcaaaggcagaagggagcttgac 6867
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
|||||||| |||||||||||||| ||||||
Sbjct: 6868 tgcaagacccacccgtcgagcagggacgaa 6897
>gb|M37430.1|PEACPDKAA Pea Chloroplast 4.5S, 5S, 16S and 23S mRNA
Length = 7920
Score = 473 bits (246), Expect = e-130
Identities = 303/330 (91%), Gaps = 4/330 (1%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 6572 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcttttcct 6631
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 6632 gcgcagcttaggtggaaggcaaagaaggcccccttccgggggggctcgagccatcagtga 6691
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
|||||||||||||||||||| | |||||||||||||| || | | ||||||||||
Sbjct: 6692 gataccactctggaagagctagaattctaaccttgtgccaagacaga---ccaagggaca 6748
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6749 gtctcaggtagacagtttctatggggcgtaggc-tcccaaaaggtaacggaggcgtgcaa 6807
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 6808 aggtttcctcgggccagacggagattggccctcgagtgcaaaggcagaagggagcttgac 6867
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
|||||||| |||||||||||||| ||||||
Sbjct: 6868 tgcaagacccacccgtcgagcagggacgaa 6897
>gb|AF393612.1| Sphagnum rubellum large subunit ribosomal RNA (rrl) gene, complete
sequence; chloroplast gene for chloroplast product
Length = 3033
Score = 462 bits (240), Expect = e-127
Identities = 300/331 (90%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 2076 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggctcttctt 2135
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 2136 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggctcgagccatcagtga 2195
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||||
Sbjct: 2196 aataccactctagaagagctagaattctaaccttgtgtcaagacttacgggccaagggac 2255
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 2315
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| ||| |||||| || | | ||||||| ||||||| ||||||||||||
Sbjct: 2316 aaggtttcctcaggctggacggaaatcagccttcgagtgtaaaggcaaaagggagcttga 2375
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||||||||||||| ||||||
Sbjct: 2376 ctgcaagacccacccgtcgagcagggacgaa 2406
>gb|AF355765.1| Amaranthus hybridus 23S ribosomal RNA gene, complete sequence;
chloroplast gene for chloroplast product
Length = 2927
Score = 452 bits (235), Expect = e-124
Identities = 307/334 (91%), Gaps = 5/334 (1%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2137 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 2196
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2197 gcgcagcttaggtggaaggcgaagaaggcccccttccgggggggcccgagccatcagtga 2256
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||
Sbjct: 2257 gataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggac 2316
Query: 188 agtc-tcaggtagacagtttctatggggcgtagg-cctcccaaaaggtaacggaggcgtg 245
|||| ||||||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct: 2317 agtcttcaggtagacagtttgta-ggggcgtaggccctcccaaaaggtaacggaggcgtg 2375
Query: 246 caaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaa-gggagct 304
||||||||| ||||||| |||||| ||||| ||| |||||||||||||||| |||||||
Sbjct: 2376 aaaaggtttcatcgggccggacggagattggccctagagtgcaaaggcagaaggggagct 2435
Query: 305 tgactgcaagactcacccgtcgagcagagacgaa 338
|||||||||||| |||||||||||||| || |||
Sbjct: 2436 tgactgcaagacccacccgtcgagcagggaagaa 2469
>gb|AF393576.1| Anthoceros punctatus small subunit ribosomal RNA (rrs) gene, partial
sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc))
genes, complete sequence; large subunit ribosomal RNA
(rrl) and 5S ribosomal RNA (rrf) genes, complete
sequence; and tRNA-Arg (trnR(acg)) gene, partial
sequence; chloroplast genes for chloroplast products
Length = 8235
Score = 444 bits (231), Expect = e-122
Identities = 297/331 (89%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5964 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 6023
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 6024 gcgcagcttaggtggaaggcgaagaaggcctccttctgggggggctcgagccatcagtga 6083
Query: 129 gataccactctggaagagctcggattctaaccttgtgtc-agacccgcgggccaagggac 187
|||||||||| |||||||| | |||||||||||||||| |||| ||||| |||||||
Sbjct: 6084 aataccactctagaagagctagaattctaaccttgtgtcaagacttacgggctaagggac 6143
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 6144 agtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggaggcgtgca 6203
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| ||| |||||| || | | ||||||||||||||||||||||||||||
Sbjct: 6204 aaggtttcctcaggctggacggaaatcagccttcgagtgcaaaggcagaagggagcttga 6263
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| || ||||||||| ||||||
Sbjct: 6264 ctgcaagacctacttgtcgagcagggacgaa 6294
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome
Length = 161162
Score = 444 bits (231), Expect = e-122
Identities = 297/331 (89%), Gaps = 1/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 149171 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 149112
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 149111 gcgcagcttaggtggaaggcgaagaaggcctccttctgggggggctcgagccatcagtga 149052
Query: 129 gataccactctggaagagctcggattctaaccttgtgtc-agacccgcgggccaagggac 187
|||||||||| |||||||| | |||||||||||||||| |||| ||||| |||||||
Sbjct: 149051 aataccactctagaagagctagaattctaaccttgtgtcaagacttacgggctaagggac 148992
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 148991 agtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggaggcgtgca 148932
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| ||| |||||| || | | ||||||||||||||||||||||||||||
Sbjct: 148931 aaggtttcctcaggctggacggaaatcagccttcgagtgcaaaggcagaagggagcttga 148872
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| || ||||||||| ||||||
Sbjct: 148871 ctgcaagacctacttgtcgagcagggacgaa 148841
Score = 444 bits (231), Expect = e-122
Identities = 297/331 (89%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 119495 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 119554
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 119555 gcgcagcttaggtggaaggcgaagaaggcctccttctgggggggctcgagccatcagtga 119614
Query: 129 gataccactctggaagagctcggattctaaccttgtgtc-agacccgcgggccaagggac 187
|||||||||| |||||||| | |||||||||||||||| |||| ||||| |||||||
Sbjct: 119615 aataccactctagaagagctagaattctaaccttgtgtcaagacttacgggctaagggac 119674
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 119675 agtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggaggcgtgca 119734
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| ||| |||||| || | | ||||||||||||||||||||||||||||
Sbjct: 119735 aaggtttcctcaggctggacggaaatcagccttcgagtgcaaaggcagaagggagcttga 119794
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| || ||||||||| ||||||
Sbjct: 119795 ctgcaagacctacttgtcgagcagggacgaa 119825
>dbj|AB087478.1| Anthoceros formosae chloroplast 23S rRNA, complete sequence
Length = 2819
Score = 444 bits (231), Expect = e-122
Identities = 297/331 (89%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2074 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 2133
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 2134 gcgcagcttaggtggaaggcgaagaaggcctccttctgggggggctcgagccatcagtga 2193
Query: 129 gataccactctggaagagctcggattctaaccttgtgtc-agacccgcgggccaagggac 187
|||||||||| |||||||| | |||||||||||||||| |||| ||||| |||||||
Sbjct: 2194 aataccactctagaagagctagaattctaaccttgtgtcaagacttacgggctaagggac 2253
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2254 agtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggaggcgtgca 2313
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| ||| |||||| || | | ||||||||||||||||||||||||||||
Sbjct: 2314 aaggtttcctcaggctggacggaaatcagccttcgagtgcaaaggcagaagggagcttga 2373
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| || ||||||||| ||||||
Sbjct: 2374 ctgcaagacctacttgtcgagcagggacgaa 2404
>dbj|AB073981.1| Anthoceros formosae chloroplast gene for 23S ribosomal RNA, complete
sequence
Length = 3503
Score = 444 bits (231), Expect = e-122
Identities = 297/331 (89%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2074 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcttttcct 2133
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 2134 gcgcagcttaggtggaaggcgaagaaggcctccttctgggggggctcgagccatcagtga 2193
Query: 129 gataccactctggaagagctcggattctaaccttgtgtc-agacccgcgggccaagggac 187
|||||||||| |||||||| | |||||||||||||||| |||| ||||| |||||||
Sbjct: 2194 aataccactctagaagagctagaattctaaccttgtgtcaagacttacgggctaagggac 2253
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2254 agtctcaggtagacagtttctatggggcgtaggcctcctaaaaggtaacggaggcgtgca 2313
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| ||| |||||| || | | ||||||||||||||||||||||||||||
Sbjct: 2314 aaggtttcctcaggctggacggaaatcagccttcgagtgcaaaggcagaagggagcttga 2373
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| || ||||||||| ||||||
Sbjct: 2374 ctgcaagacctacttgtcgagcagggacgaa 2404
>emb|AJ005357.1|ATA005357 Aesculus turbinata microsatellite DNA, locus AT3D6
Length = 744
Score = 442 bits (230), Expect = e-121
Identities = 270/291 (92%), Gaps = 2/291 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 72 ctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcttttcct 131
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 132 gcgcagcttaggtggaaggcgaagaaggcctccttccgggggggcccgagccatcagtga 191
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagaccc--gcgggccaaggga 186
|||||||||||||||||||| | |||||||||||||||||| || ||||||||||||
Sbjct: 192 gataccactctggaagagctagaattctaaccttgtgtcaggacctaacgggccaaggga 251
Query: 187 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 311
Query: 247 aaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaa 297
||||||||| ||||||| |||||| ||||| ||||||||||||||||||||
Sbjct: 312 aaaggtttcttcgggccggacggagattggccctcgagtgcaaaggcagaa 362
>emb|AJ535065.1|OSA535065 Oryza sativa (japonica cultivar-group) mdr7 gene for MDR-like ABC
transporter, exons 1-12
Length = 6668
Score = 440 bits (229), Expect = e-120
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 520 ttggtgtttcgcagtcaagtgcattgtctactaatgcaacaaaggcaagggattctgcca 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5519 ttggtgtttcgcagtcaagtgcattgtctactaatgcaacaaaggcaagggattctgcca 5578
Query: 580 tttccatttttagtattatcgatcggaagtctaggattgattcaagtagcgacgagggag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579 tttccatttttagtattatcgatcggaagtctaggattgattcaagtagcgacgagggag 5638
Query: 640 cgataatggaaaacgtcactggcagcattgatttcaataatgtcagtttcaagtacccat 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5639 cgataatggaaaacgtcactggcagcattgatttcaataatgtcagtttcaagtacccat 5698
Query: 700 cacgccctgatgttcaaatattcagtgactttaccttgcacattccttc 748
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5699 cacgccctgatgttcaaatattcagtgactttaccttgcacattccttc 5747
Score = 356 bits (185), Expect = 3e-95
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 331 gagacgaaggatgctgcggcggcggcgtcgtcgtcgtcggggaagaaggtgccgctgttc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 gagacgaaggatgctgcggcggcggcgtcgtcgtcgtcggggaagaaggtgccgctgttc 102
Query: 391 agcttgttccggtacgccgaccgcctcgacgtgctgctgatggttgtcggcacggtgggc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 agcttgttccggtacgccgaccgcctcgacgtgctgctgatggttgtcggcacggtgggc 162
Query: 451 gcgctcggcaacggcatctcgcagcccctcatgacggtcctcttcggcaacgtcatcaac 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gcgctcggcaacggcatctcgcagcccctcatgacggtcctcttcggcaacgtcatcaac 222
Query: 511 tcctt 515
|||||
Sbjct: 223 tcctt 227
>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0431H09
Length = 166886
Score = 440 bits (229), Expect = e-120
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 520 ttggtgtttcgcagtcaagtgcattgtctactaatgcaacaaaggcaagggattctgcca 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164122 ttggtgtttcgcagtcaagtgcattgtctactaatgcaacaaaggcaagggattctgcca 164063
Query: 580 tttccatttttagtattatcgatcggaagtctaggattgattcaagtagcgacgagggag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164062 tttccatttttagtattatcgatcggaagtctaggattgattcaagtagcgacgagggag 164003
Query: 640 cgataatggaaaacgtcactggcagcattgatttcaataatgtcagtttcaagtacccat 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164002 cgataatggaaaacgtcactggcagcattgatttcaataatgtcagtttcaagtacccat 163943
Query: 700 cacgccctgatgttcaaatattcagtgactttaccttgcacattccttc 748
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163942 cacgccctgatgttcaaatattcagtgactttaccttgcacattccttc 163894
Score = 79.5 bits (41), Expect = 7e-12
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 395 tgttccggtacgccgaccgcctcgacgtgctgctgatggttgtcggcacggtgggcgcgc 454
||||| ||||||||||| || ||||| | |||||||| ||||||||||||| |||
Sbjct: 145410 tgttcaggtacgccgacggcgtcgacaaggcgctgatggcggtcggcacggtggcggcga 145469
Query: 455 tcggcaacggcatctcgcagcccctcatgacggtcctcttc 495
| | |||||||| ||| |||| |||||||| ||| |||||
Sbjct: 145470 tggcgaacggcatgtcggagccgctcatgaccgtcgtcttc 145510
Score = 56.4 bits (29), Expect = 6e-05
Identities = 69/89 (77%)
Strand = Plus / Plus
Query: 648 gaaaacgtcactggcagcattgatttcaataatgtcagtttcaagtacccatcacgccct 707
||||| || | ||||| || || || ||| |||| | |||||||||||||| |||||
Sbjct: 155261 gaaaaggttaatggcacaatagaattgaatcatgtgaacttcaagtacccatctcgccca 155320
Query: 708 gatgttcaaatattcagtgactttacctt 736
||||| ||| | || |||| ||||||||
Sbjct: 155321 gatgtccaagttttatgtgattttacctt 155349
>gb|AF393587.1| Climacium dendroides large subunit ribosomal RNA (rrl) gene, complete
sequence; chloroplast gene for chloroplast product
Length = 3020
Score = 431 bits (224), Expect = e-118
Identities = 294/330 (89%), Gaps = 3/330 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 2074 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggctcttctt 2133
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct: 2134 gcgcagcttaggtggaaggcgaagaaggccctcttccgggagggctcgagccatcagtga 2193
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
|||||||||| |||||||| | ||||||||||||| ||| | |||||||||||||
Sbjct: 2194 aataccactctagaagagctagaattctaaccttgtatcaatac---gggccaagggaca 2250
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 2310
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
|||||||||| ||| |||||| || | | ||||||| ||||||| |||||||||||||
Sbjct: 2311 aggtttcctcaggctggacggaaatcagccttcgagtgtaaaggcaaaagggagcttgac 2370
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
|||||||| ||||||||||||| ||||||
Sbjct: 2371 tgcaagacctacccgtcgagcagggacgaa 2400
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0557A01
Length = 147201
Score = 429 bits (223), Expect = e-117
Identities = 225/226 (99%)
Strand = Plus / Plus
Query: 113 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126105 cccgagccatcagtgagataccactctggaagagctcggattctaaccttgtgtcagacc 126164
Query: 173 cgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaagg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126165 cgcgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaagg 126224
Query: 233 taacggaggcgtgcaaaggtttcctcgggccagacggacattggtcctcgagtgcaaagg 292
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 126225 taacggaggcgtgcaaaggtttcctcgggccagacggacattggtcctcaagtgcaaagg 126284
Query: 293 cagaagggagcttgactgcaagactcacccgtcgagcagagacgaa 338
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126285 cagaagggagcttgactgcaagactcacccgtcgagcagagacgaa 126330
>emb|AJ318074.1|CSA318074 Cucumis sativus chloroplast ccsA gene, ndhD gene (partial), 4.5S rRNA
gene, 23S rRNA gene (partial) and 5S rRNA gene
Length = 6689
Score = 398 bits (207), Expect = e-108
Identities = 287/318 (90%), Gaps = 7/318 (2%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 2110 ctggacagaaagaccctattcagcttcactcttccctgggattggctttgggcctttcct 2169
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnn--cccgagccatcagt 126
||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 2170 gcgcagcttaggtggaaggcgaagaag-cccccttcggggggggggcccgagccatcagt 2228
Query: 127 gagataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaaggg 185
||||||||||||| |||||| | |||||||||||||||||| ||| |||||||||||
Sbjct: 2229 gagataccactcttccagagctagaattctaaccttgtgtcaggacctacgggccaaggg 2288
Query: 186 acagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtg 245
||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 2289 acagtctcaggtaaacagtttct--ggggcgtag-cctcccaaaaggtaacggaggcgtg 2345
Query: 246 caaaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagctt 305
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 2346 caaaggtttcctcgggccagacggagattggccctcgagtgcaaaggcagaagggagctt 2405
Query: 306 gactgcaagactcacccg 323
||||||||||| |||||
Sbjct: 2406 gactgcaagaccgacccg 2423
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome
Length = 138829
Score = 392 bits (204), Expect = e-106
Identities = 288/331 (87%), Gaps = 1/331 (0%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 126373 ctggacagaaagaccctatgaagcttcactgttccctgagattggctttgggctcctcct 126314
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct: 126313 gcgcagcttaggtgggaggcgaagaaggcccctttccgggggggttcgagccatcagtga 126254
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||| || | ||| | ||||||||| || |||| ||| |||||||||||||
Sbjct: 126253 aataccactctagaggggctagaattctaaccctgcgtcaagactgacgggccaagggac 126194
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126193 agtttcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 126134
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| || |||||| || | | ||||||||||||||||||||||||||
Sbjct: 126133 aaggtttcctcaagctggacggaaatcagcttttgagtgcaaaggcagaagggagcttga 126074
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||| ||||||||| ||||||
Sbjct: 126073 ctgcaagacccaccagtcgagcagggacgaa 126043
Score = 392 bits (204), Expect = e-106
Identities = 288/331 (87%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 97074 ctggacagaaagaccctatgaagcttcactgttccctgagattggctttgggctcctcct 97133
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
||||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct: 97134 gcgcagcttaggtgggaggcgaagaaggcccctttccgggggggttcgagccatcagtga 97193
Query: 129 gataccactctggaagagctcggattctaaccttgtgtca-gacccgcgggccaagggac 187
|||||||||| || | ||| | ||||||||| || |||| ||| |||||||||||||
Sbjct: 97194 aataccactctagaggggctagaattctaaccctgcgtcaagactgacgggccaagggac 97253
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97254 agtttcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 97313
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| || |||||| || | | ||||||||||||||||||||||||||
Sbjct: 97314 aaggtttcctcaagctggacggaaatcagcttttgagtgcaaaggcagaagggagcttga 97373
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| |||| ||||||||| ||||||
Sbjct: 97374 ctgcaagacccaccagtcgagcagggacgaa 97404
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA
Length = 121024
Score = 385 bits (200), Expect = e-104
Identities = 290/331 (87%), Gaps = 4/331 (1%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 87981 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggtttttctt 88040
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 88041 gcgcagcttaggtggaaggcaaagaaggcccctt--ctgggcggtgggagc-atcagtga 88097
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccg-cgggccaagggac 187
|||||||||| |||||||| | ||||||||||||||||| | |||||||||||||
Sbjct: 88098 aataccactctagaagagctagaattctaaccttgtgtcaaaatttacgggccaagggac 88157
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 88158 attctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggtgtgca 88217
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| ||| |||||| || | | ||||||||||||||||||||||||||||
Sbjct: 88218 aaggtttcctcaggctggacggaaatcagccttcgagtgcaaaggcagaagggagcttga 88277
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| ||||||||||||| ||||||
Sbjct: 88278 ctgcaagacatacccgtcgagcagggacgaa 88308
Score = 385 bits (200), Expect = e-104
Identities = 290/331 (87%), Gaps = 4/331 (1%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 114139 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggtttttctt 114080
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||| ||||||||||| | | |||| ||||||||
Sbjct: 114079 gcgcagcttaggtggaaggcaaagaaggcccctt--ctgggcggtgggagc-atcagtga 114023
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccg-cgggccaagggac 187
|||||||||| |||||||| | ||||||||||||||||| | |||||||||||||
Sbjct: 114022 aataccactctagaagagctagaattctaaccttgtgtcaaaatttacgggccaagggac 113963
Query: 188 agtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgca 247
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 113962 attctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggtgtgca 113903
Query: 248 aaggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttga 307
||||||||||| ||| |||||| || | | ||||||||||||||||||||||||||||
Sbjct: 113902 aaggtttcctcaggctggacggaaatcagccttcgagtgcaaaggcagaagggagcttga 113843
Query: 308 ctgcaagactcacccgtcgagcagagacgaa 338
||||||||| ||||||||||||| ||||||
Sbjct: 113842 ctgcaagacatacccgtcgagcagggacgaa 113812
>emb|AJ007508.1|GGN7508 Gnetum gnemon chloroplast psaC, ccsA, 4.5S rRNA, 5S rRNA, 16S rRNA
(partial), 23S rRNA, and tRNA (Leu, Asn, Arg, Ala and
Ile) genes
Length = 9493
Score = 373 bits (194), Expect = e-100
Identities = 291/333 (87%), Gaps = 4/333 (1%)
Strand = Plus / Minus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| |
Sbjct: 4488 ctggacagaaagaccctatgaagctttactgtttcctgggattgagtttgggcttttctt 4429
Query: 69 gcgcagcttaggtggaaggcgaagaaggc-ccccttccnnnnnnncccgagccatcagtg 127
||||| |||||||| ||||| ||||| ||| || | || ||||||||||||
Sbjct: 4428 gcgcacgttaggtggggggcgagaaaggctccctttgcgggggggccagagccatcagtg 4369
Query: 128 agataccactctggaagagctcggattctaaccttgtgtcag-acccgcgggccaaggga 186
|||||||||||| |||| || | | |||||||||| ||||| ||| ||||||||||||
Sbjct: 4368 agataccactctagaagtgccagaactctaaccttgcgtcagaacctacgggccaaggga 4309
Query: 187 cagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgc 246
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4308 cagtctcaggtagacagtttctatggggcgtagg-ctcccaaaaggtaacggaggcgtgc 4250
Query: 247 aaaggtttcctcgggccagac-ggacattggtcctcgagtgcaaaggcagaagggagctt 305
||||||||||||||||| || || | | |||||||||||| ||||||||||||||||||
Sbjct: 4249 aaaggtttcctcgggccgtactggccgtcggtcctcgagtgtaaaggcagaagggagctt 4190
Query: 306 gactgcaagactcacccgtcgagcagagacgaa 338
||||||||||| |||||||||||||| ||||||
Sbjct: 4189 gactgcaagacccacccgtcgagcagggacgaa 4157
>gb|AF393606.1| Pellia neesiana large subunit ribosomal RNA (rrl) gene, complete
sequence; chloroplast gene for chloroplast product
Length = 2989
Score = 369 bits (192), Expect = 3e-99
Identities = 285/330 (86%), Gaps = 4/330 (1%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct: 2080 ctggacagaaagaccctatgaagctttactgttccctgggattggcttcgggttcttctt 2139
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||| ||||||| ||| ||| | ||||| |||||||
Sbjct: 2140 gcgcagcttaggtggaaggcaaagaaggtccc--tcccggggggctagagccgtcagtga 2197
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
||||||||||||||||||| | |||||||||| | |||| | || |||||||| |||
Sbjct: 2198 aataccactctggaagagctagaattctaacctcgcgtcattcacg--ggccaaggaaca 2255
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 2256 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggtgcgcaa 2315
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
|||||||||| || ||||| || | | |||||||||||||||||||||||||||||
Sbjct: 2316 aggtttcctcaggttggacgggaatcagccttcgagtgcaaaggcagaagggagcttgac 2375
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
|||||||| ||||||||||||| ||||||
Sbjct: 2376 tgcaagacatacccgtcgagcagggacgaa 2405
>gb|AF393586.1| Chara sp. CL-2002-2 small subunit ribosomal RNA (rrs) gene, partial
sequence; tRNA-Ile (trnI(gau)) and tRNA-Ala (trnA(ugc))
genes, complete sequence; large subunit ribosomal RNA
(rrl) and 5S ribosomal RNA (rrf) genes, complete
sequence; and tRNA-Arg (trnR(acg)) gene, partial
sequence; chloroplast genes for chloroplast products
Length = 7651
Score = 362 bits (188), Expect = 6e-97
Identities = 282/330 (85%), Gaps = 3/330 (0%)
Strand = Plus / Plus
Query: 9 ctggacagaaagaccctatgaagctttactgttccctgggattggctttgggcctttcct 68
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 6083 ctggacagaaagaccctatgaagctttactgttccctgggattgggtttgggcttttcct 6142
Query: 69 gcgcagcttaggtggaaggcgaagaaggcccccttccnnnnnnncccgagccatcagtga 128
|||||||||||||||||||| |||||| | |||| | |||||||||||||
Sbjct: 6143 gcgcagcttaggtggaaggcttagaaggtctttttccggaaagactggagccatcagtga 6202
Query: 129 gataccactctggaagagctcggattctaaccttgtgtcagacccgcgggccaagggaca 188
||||||||||| || |||| | ||||||||||| |||| ||| || |||||| |
Sbjct: 6203 gataccactcttgagaagctagaattctaaccttatgtcgtttccg---gctaagggaaa 6259
Query: 189 gtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaa 248
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6260 gtctcaggtagacagtttctatggggcgtaggcctcccaaagggtaacggaggcgtgcaa 6319
Query: 249 aggtttcctcgggccagacggacattggtcctcgagtgcaaaggcagaagggagcttgac 308
||||| |||| ||| |||||| || | | | ||||| ||||||| |||||||||||||
Sbjct: 6320 aggttccctcaggctggacggaaatcagccattgagtgtaaaggcaaaagggagcttgac 6379
Query: 309 tgcaagactcacccgtcgagcagagacgaa 338
||||||||| || |||||||||| ||||||
Sbjct: 6380 tgcaagactgactcgtcgagcagggacgaa 6409
Database: nt
Posted date: Apr 9, 2003 3:39 PM
Number of letters in database: 4,294,883,762
Number of sequences in database: 1,016,073
Database: /biodata/blast/nt.01
Posted date: Apr 9, 2003 4:14 PM
Number of letters in database: 3,779,514,626
Number of sequences in database: 710,483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.33 0.621 1.12
Matrix: blastn matrix:1 -2
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,254,319
Number of Sequences: 1726556
Number of extensions: 3254319
Number of successful extensions: 29989
Number of sequences better than 1.0e-02: 763
length of query: 748
length of database: 8,074,398,388
effective HSP length: 24
effective length of query: 724
effective length of database: 8,032,961,044
effective search space: 5815863795856
effective search space used: 5815863795856
T: 0
A: 30
X1: 6 (11.5 bits)
X2: 15 (28.8 bits)
S1: 12 (23.8 bits)
S2: 26 (50.7 bits)
